mRNA_M-pyrifera_M_contig105631.1206.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105631.1206.1
Unique NamemRNA_M-pyrifera_M_contig105631.1206.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: A0A7M7LPG3_STRPU (Nucleotid_trans domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7LPG3_STRPU)

HSP 1 Score: 57.8 bits (138), Expect = 4.180e-8
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   22 LRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLW 195
            L+   +    FP G D+F+ ++ E +  I   E ++ HNNWIKGHD+K++RF+   +W
Sbjct:  309 LKLKYLDQRQFPNGNDYFNVEWREKHANI---EPIVVHNNWIKGHDIKIERFKNASMW 363          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI0014557604 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014557604)

HSP 1 Score: 55.8 bits (133), Expect = 1.760e-7
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   16 AGLRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVE 204
            AGL+  ++    FP G+ FFD ++ +D       + ++ HNNWI GHD K++RFR   +W V+
Sbjct:  222 AGLKLRVLDSNKFPNGKLFFDDEWRKDK-----KDFVVVHNNWIVGHDPKVERFRNCSMWLVD 279          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI001454F6E2 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001454F6E2)

HSP 1 Score: 55.8 bits (133), Expect = 2.040e-7
Identity = 24/63 (38.10%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   16 AGLRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVE 204
            AGL+  ++    FP G+ FFD ++ +D       + ++ HNNWI GHD K++RFR   +W V+
Sbjct:  348 AGLKLRVLDSNKFPNGKLFFDDEWRKDK-----KDFVVVHNNWIVGHDPKVERFRNCSMWLVD 405          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI00145504A4 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145504A4)

HSP 1 Score: 55.5 bits (132), Expect = 2.720e-7
Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   19 GLRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGV 201
            GL+  I+  ++FP G  FFD    +   Q  + + ++ HNN+IKGHDVK++RF+  ++W V
Sbjct:  293 GLKLKILSSDNFPNGALFFD----DKKQQTKNKDVVVVHNNFIKGHDVKIERFKRVNMWLV 349          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: A0A7M7MZB5_STRPU (Nucleotid_trans domain-containing protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7MZB5_STRPU)

HSP 1 Score: 55.1 bits (131), Expect = 3.950e-7
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   22 LRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVEE 207
            ++ A++    FP+G+ +FD D+ E       +E ++ HNNWIKGHD K++RFR   LW +++
Sbjct:  945 IKRAVMDSRLFPSGRLYFDPDWREANKD---TEQVMVHNNWIKGHDRKVERFRNEGLWYLDD 1003          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI00142567B8 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3-like isoform X2 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142567B8)

HSP 1 Score: 52.8 bits (125), Expect = 2.380e-6
Identity = 23/63 (36.51%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   16 AGLRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVE 204
            A L+  ++    FP GQ +F++      +  Y  +A+I HNNW+ GHD+K +RF++  LW V+
Sbjct:  254 ARLKRKVLGSHEFPNGQMYFNNT-----MSNYQHKAVIVHNNWVVGHDIKKKRFQDASLWLVD 311          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI001BB1F4D3 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1F4D3)

HSP 1 Score: 52.8 bits (125), Expect = 2.410e-6
Identity = 22/58 (37.93%), Postives = 32/58 (55.17%), Query Frame = 1
Query:   22 LRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLW 195
            L    +    FP G D+F+  +      +   E ++ HNNWIKGHDVK++RF+   LW
Sbjct:  268 LNVKYLDQRQFPNGNDYFNAKWRMKNADV---EPIVVHNNWIKGHDVKIKRFKNVSLW 322          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: UPI0018D5CC83 (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5CC83)

HSP 1 Score: 49.7 bits (117), Expect = 3.040e-5
Identity = 21/61 (34.43%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   22 LRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVE 204
            L+  ++  + FP G+ FF+  +  +      S+ ++ HNNWI GHD K++RFR  ++W V+
Sbjct:  307 LQVRVLNWDRFPNGKLFFNETWRRE-----RSDFVVVHNNWIVGHDTKVERFRNLNMWLVD 362          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: A0A7S3AMX4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AMX4_9EUKA)

HSP 1 Score: 46.6 bits (109), Expect = 7.440e-5
Identity = 21/63 (33.33%), Postives = 34/63 (53.97%), Query Frame = 1
Query:   10 QDAGLRYAIVPPESFPTGQDFFDHDYVED-YVQIYHSEALIAHNNWIKGHDVKLQRFREYHLW 195
            ++  L   ++P E FP G     + Y  D +        ++ HNNWIKGH+ K++RFR + +W
Sbjct:   34 RETNLPLRVLPCEKFPNG-----YRYASDAWRAAQRRPPVLVHNNWIKGHEAKMKRFRAWGMW 91          
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Match: A0A8B7XWT3_ACAPL (UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 1-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XWT3_ACAPL)

HSP 1 Score: 48.5 bits (114), Expect = 7.790e-5
Identity = 22/62 (35.48%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   22 LRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIKGHDVKLQRFREYHLWGVEE 207
            L+  ++  + FP G+ FF+  +  D   I     ++ HNNWI GHD K++RFR   +W V++
Sbjct:  303 LKLQVLNSDRFPNGKLFFNETWRRDKRGI-----VVVHNNWIIGHDPKVERFRNNSMWLVDK 359          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105631.1206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7M7LPG3_STRPU4.180e-837.93Nucleotid_trans domain-containing protein n=2 Tax=... [more]
UPI00145576041.760e-738.10UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
UPI001454F6E22.040e-738.10UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
UPI00145504A42.720e-739.34UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
A0A7M7MZB5_STRPU3.950e-738.71Nucleotid_trans domain-containing protein n=2 Tax=... [more]
UPI00142567B82.380e-636.51UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
UPI001BB1F4D32.410e-637.93UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
UPI0018D5CC833.040e-534.43UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
A0A7S3AMX4_9EUKA7.440e-533.33Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A8B7XWT3_ACAPL7.790e-535.48UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransfera... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105631contigM-pyrifera_M_contig105631:271..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5.6e-08
Seed eggNOG ortholog2880.D8LU02
KEGG koko:K11714,ko:K20784
KEGG Pathwayko00514,map00514
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005975,GO:0005976,GO:0006464,GO:0006486,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008378,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009664,GO:0009832,GO:0009856,GO:0009987,GO:0010306,GO:0010383,GO:0010393,GO:0010396,GO:0012505,GO:0016043,GO:0016051,GO:0016740,GO:0016757,GO:0016758,GO:0016763,GO:0017144,GO:0019538,GO:0022414,GO:0032501,GO:0032502,GO:0033692,GO:0034637,GO:0034645,GO:0035250,GO:0035252,GO:0036211,GO:0042285,GO:0042546,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044036,GO:0044038,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0045229,GO:0045488,GO:0045489,GO:0048856,GO:0048868,GO:0051704,GO:0052325,GO:0052546,GO:0070085,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.rhamnogalacturonan II biosynthetic process
EggNOG OGs28KPY@1,2QT5X@2759
COG Functional cat.M
CAZyGT77
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.979038-CDS-M-pyrifera_M_contig105631:270..4771622815564.979038-CDS-M-pyrifera_M_contig105631:270..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105631 271..477 -
1692277466.0846384-CDS-M-pyrifera_M_contig105631:270..4771692277466.0846384-CDS-M-pyrifera_M_contig105631:270..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105631 271..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105631.1206.1prot_M-pyrifera_M_contig105631.1206.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105631 271..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105631.1206.1

>prot_M-pyrifera_M_contig105631.1206.1 ID=prot_M-pyrifera_M_contig105631.1206.1|Name=mRNA_M-pyrifera_M_contig105631.1206.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
MQQQDAGLRYAIVPPESFPTGQDFFDHDYVEDYVQIYHSEALIAHNNWIK
GHDVKLQRFREYHLWGVEE
back to top

mRNA from alignment at M-pyrifera_M_contig105631:271..477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105631.1206.1 ID=mRNA_M-pyrifera_M_contig105631.1206.1|Name=mRNA_M-pyrifera_M_contig105631.1206.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig105631:271..477- (Macrocystis pyrifera P11B4 male)
ATGCAGCAGCAAGACGCCGGGCTGCGCTACGCGATAGTCCCGCCGGAATC GTTTCCTACCGGGCAGGATTTTTTCGACCACGACTACGTCGAAGACTACG TGCAGATCTACCACAGCGAGGCGCTGATCGCTCATAACAACTGGATCAAG GGGCACGACGTCAAGCTCCAGCGCTTCCGCGAGTACCATCTGTGGGGCGT GGAAGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig105631:271..477-

>mRNA_M-pyrifera_M_contig105631.1206.1 ID=mRNA_M-pyrifera_M_contig105631.1206.1|Name=mRNA_M-pyrifera_M_contig105631.1206.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig105631:271..477- (Macrocystis pyrifera P11B4 male)
ATGCAGCAGCAAGACGCCGGGCTGCGCTACGCGATAGTCCCGCCGGAATC
GTTTCCTACCGGGCAGGATTTTTTCGACCACGACTACGTCGAAGACTACG
TGCAGATCTACCACAGCGAGGCGCTGATCGCTCATAACAACTGGATCAAG
GGGCACGACGTCAAGCTCCAGCGCTTCCGCGAGTACCATCTGTGGGGCGT
GGAAGAGATGCAGCAGCAAGACGCCGGGCTGCGCTACGCGATAGTCCCGC
CGGAATCGTTTCCTACCGGGCAGGATTTTTTCGACCACGACTACGTCGAA
GACTACGTGCAGATCTACCACAGCGAGGCGCTGATCGCTCATAACAACTG
GATCAAGGGGCACGACGTCAAGCTCCAGCGCTTCCGCGAGTACCATCTGT
GGGGCGTGGAAGAG
back to top