mRNA_M-pyrifera_M_contig105587.1203.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105587.1203.1
Unique NamemRNA_M-pyrifera_M_contig105587.1203.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: A0A7C8AJX2_9BACT (EpsI family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8AJX2_9BACT)

HSP 1 Score: 150 bits (379), Expect = 5.450e-43
Identity = 71/153 (46.41%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 DATIPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVGQGLIVQKGETQEAVLYWFKTGDQSTANYAMNTYFWSRETLMMRNPTSQLIRLSTRIGDGGEDRAFRALSDFASGLVPLLLQ 459
            D  + E +++ L+T+T+L+R Y   +G P+QLTIV AG +RRSLHFP+VC  GQGWE   +  +PVG  F  Q L+V KG  ++AVLYWFKTG++ T +Y +N++ W+R  L     TS L+RLS  IG+  E   F  L DFA+   P+L++
Sbjct:   53 DQEVEEEVQRMLQTSTVLVRNYAGPDGWPLQLTIVYAGTTRRSLHFPQVCLVGQGWEIREQTTMPVGFSFRAQRLVVVKGAQRQAVLYWFKTGERLTGDYFVNSWHWARNQLFSGAATSALVRLSAPIGNRDESAVFSLLEDFAAKFTPILME 205          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: A0A7Y5C9P7_9BACT (EpsI family protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C9P7_9BACT)

HSP 1 Score: 150 bits (379), Expect = 4.160e-40
Identity = 71/153 (46.41%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 DATIPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVGQGLIVQKGETQEAVLYWFKTGDQSTANYAMNTYFWSRETLMMRNPTSQLIRLSTRIGDGGEDRAFRALSDFASGLVPLLLQ 459
            D  I E+ R+ LET+ I++R+Y +  GR VQL+IV AG +RRSLHFPEVC  G GWE   +  +P+G+ F  + L++ K +  EAVLYWFKTGD  T ++  N   W+R  +    PTS +I+L+T IG  GE  AF  L DFA+   P++L+
Sbjct:  362 DYEIDETTRRILETSAIMIRDYAAPGGRFVQLSIVHAGSTRRSLHFPEVCLVGDGWEIVKQRQVPIGILFSAKQLVLVKADRSEAVLYWFKTGDHVTGDFFRNALEWTRNQITFGEPTSAMIKLATPIGPAGERAAFDTLEDFATKFAPVMLE 514          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: A0A1G1MCR5_9BACT (EpsI family protein n=1 Tax=Omnitrophica WOR_2 bacterium RBG_13_41_10 TaxID=1801849 RepID=A0A1G1MCR5_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 1.650e-16
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   34 LETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVGQGLIVQKGETQEAVLYWFKTGDQSTANYAMNTYFWSRETLMMRNPTSQLIRLSTRIGDGGEDRAFRALSDFASGLVPLL 453
            LET  + +R+Y +  G  V L ++ +  +R+  H PEVC  G G     K+LI V        LIV+KG++++ V+YWFK G   T  Y         + +  +     +IR+ST I D G++ A   +  F S + PLL
Sbjct:   62 LETRNLFIRDYKNKKGDSVYLYVIYSEDNRKVSHPPEVCLMGSGVNILDKSLIDVTDDINANKLIVEKGDSRQLVVYWFKAGKLYTDKYIKQQLKVVVDRMFGKRTAGAMIRVSTDIKDHGQESALNLIRTFCSQIEPLL 201          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: A0A1G1PTK5_9BACT (EpsI family protein n=2 Tax=unclassified Candidatus Omnitrophica TaxID=1047005 RepID=A0A1G1PTK5_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 1.850e-15
Identity = 55/161 (34.16%), Postives = 76/161 (47.20%), Query Frame = 1
Query:    1 DATIPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVGQG-------LIVQKGETQEAVLYWFKTGDQSTANYAMNT--YFWSRETLMMRNPTS-QLIRLSTRIGDGGEDRAFRALSDFASGLVPLL 453
            D  I + + Q LET  +LMREY+++ G  V L IV +G SR + H PE+C+ G G E   K +  V     G+        L+++    QE   YWF  G + T NY +    + W+    + RNP    LIR+S R   G    A      F   L PLL
Sbjct:   51 DIPITKRVYQILETEDVLMREYINARGEKVDLVIVYSGASRAAFHPPEICYLGDGRELLIKNIETVETGVKGEDSTLRTNRLLMKDKFGQEIAWYWFTVGSKITENYYLQQCYFIWNE---LSRNPAGGSLIRVSARTTSGDPSHADATGKGFIRLLAPLL 208          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: Q39U43_GEOMG (Exopolysaccharide synthesis periplasmic protein I n=3 Tax=Geobacter TaxID=28231 RepID=Q39U43_GEOMG)

HSP 1 Score: 58.2 bits (139), Expect = 2.240e-7
Identity = 37/157 (23.57%), Postives = 70/157 (44.59%), Query Frame = 1
Query:    7 TIPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVG--------QGLIVQKGETQEAVLYWFKTGDQSTANYAMNTYFWSRETLMMRNPTSQLIRLSTRIG---DGGEDRAFRALSDFASGLV 444
            T+ + ++  LET  IL R+Y S  G  V L++V    ++   H PE C  G G +   + ++P+ V   G          L++   E    + Y++ +GD+ T  Y+   +   ++ +  + P+   ++L   +    D   D A R ++  A  L 
Sbjct:   48 TVEDRVKDILETEYILSRDYSSPQGEHVYLSLVYYPDNKIGFHNPESCNTGVGMKVLDERIVPITVTLAGGKQEQIDLNRLVLGYAEPVRVIYYFYLSGDRMTGKYSTFRWEMLQQQMQFKRPSGAQVQLHVPVRGSVDATRDVATRYMNSLAPALT 204          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: UPI001AC3B376 (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001AC3B376)

HSP 1 Score: 53.5 bits (127), Expect = 1.100e-5
Identity = 34/156 (21.79%), Postives = 70/156 (44.87%), Query Frame = 1
Query:   10 IPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVCFAGQGWETASKALIPVGVYFVG--------QGLIVQKGETQEAVLYWFKTGDQSTANYAMNTYFWSRETLMMRNPTSQLIRLSTRIGDGGEDRAFRALSDFASGLVPLL 453
            + + +++ L+T  IL R+Y S  G  V L++V    ++   H PE C  G G +   + ++P+ V   G          L++   E    + Y++ +GD+ T  Y+   +   ++ +  + P+   ++L      G  D     ++ + + L P L
Sbjct:   49 VEDRVKEILDTEYILSRDYASPQGEHVYLSLVYYPDNKIGFHNPESCNTGVGMKVLEERIVPITVTPAGGKQEQIDLNMLVLGSTEPVRVIYYFYLSGDRMTGKYSNFRWEMLQQQMQFKRPSGAQVQLHVP-ARGNVDSTRDVVTRYMNSLAPAL 203          
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Match: D8F3F7_9DELT (EpsI family protein n=1 Tax=delta proteobacterium NaphS2 TaxID=88274 RepID=D8F3F7_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 1.740e-5
Identity = 45/151 (29.80%), Postives = 72/151 (47.68%), Query Frame = 1
Query:   34 LETNTILMREYVSSNGRPVQLTIVQAGKSRR--SLHFPEVCFAGQGW--ETASKALIPV----GVYFVGQGLIVQKGETQEAVLYWF-KTGDQSTANYAMNTY-FWSRETLMMRNPTSQLIRLSTRIGDG-GEDRAFRALSDFASGLVPLL 453
            L+ +  ++  Y   +GR V L +      R+  S+H P  C  G GW    A +  + V    G + V Q  ++QKGE Q+ V YWF + G   T  Y +  Y FW  + +  +     L+RL T +  G G ++A   L +F   ++P+L
Sbjct:  365 LDLSDYVIVNYRDPSGREVNLYVAYYESQRKGESIHTPGTCLPGSGWLFRKAGRRNVNVKGKPGGFPVNQA-VMQKGEHQQVVYYWFPQRGRILTNAYELKFYAFW--DAMTRQRTDGALVRLITPVYAGEGPEKAEARLQEFMGEVLPVL 512          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105587.1203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7C8AJX2_9BACT5.450e-4346.41EpsI family protein n=1 Tax=Candidatus Hydrogenede... [more]
A0A7Y5C9P7_9BACT4.160e-4046.41EpsI family protein n=1 Tax=Candidatus Hydrogenede... [more]
A0A1G1MCR5_9BACT1.650e-1632.86EpsI family protein n=1 Tax=Omnitrophica WOR_2 bac... [more]
A0A1G1PTK5_9BACT1.850e-1534.16EpsI family protein n=2 Tax=unclassified Candidatu... [more]
Q39U43_GEOMG2.240e-723.57Exopolysaccharide synthesis periplasmic protein I ... [more]
UPI001AC3B3761.100e-521.79Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
D8F3F7_9DELT1.740e-529.80EpsI family protein n=1 Tax=delta proteobacterium ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105587contigM-pyrifera_M_contig105587:149..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue5.8e-08
Seed eggNOG ortholog1286106.MPL1_00190
Hectar predicted targeting categoryother localisation
EggNOG free text desc.eight transmembrane protein EpsH
EggNOG OGs1MXZG@1224,1RQYZ@1236,COG1269@1,COG1269@2
COG Functional cat.C
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size471
Cds size471
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.865192-CDS-M-pyrifera_M_contig105587:148..6191622815564.865192-CDS-M-pyrifera_M_contig105587:148..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105587 149..619 -
1692277466.0221784-CDS-M-pyrifera_M_contig105587:148..6191692277466.0221784-CDS-M-pyrifera_M_contig105587:148..619Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105587 149..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105587.1203.1prot_M-pyrifera_M_contig105587.1203.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105587 149..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105587.1203.1

>prot_M-pyrifera_M_contig105587.1203.1 ID=prot_M-pyrifera_M_contig105587.1203.1|Name=mRNA_M-pyrifera_M_contig105587.1203.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
DATIPESLRQELETNTILMREYVSSNGRPVQLTIVQAGKSRRSLHFPEVC
FAGQGWETASKALIPVGVYFVGQGLIVQKGETQEAVLYWFKTGDQSTANY
AMNTYFWSRETLMMRNPTSQLIRLSTRIGDGGEDRAFRALSDFASGLVPL
LLQTEQ*
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mRNA from alignment at M-pyrifera_M_contig105587:149..619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105587.1203.1 ID=mRNA_M-pyrifera_M_contig105587.1203.1|Name=mRNA_M-pyrifera_M_contig105587.1203.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=471bp|location=Sequence derived from alignment at M-pyrifera_M_contig105587:149..619- (Macrocystis pyrifera P11B4 male)
GACGCGACTATTCCGGAATCACTTCGCCAAGAGCTGGAGACGAACACGAT CCTGATGCGGGAATACGTCTCATCGAACGGTCGACCGGTACAATTGACTA TCGTTCAAGCGGGCAAGTCGCGCCGCAGCCTGCACTTTCCCGAAGTGTGC TTTGCCGGGCAAGGTTGGGAAACGGCGAGCAAGGCGCTCATTCCGGTGGG CGTGTACTTCGTGGGTCAAGGTCTGATTGTGCAAAAAGGCGAAACGCAAG AAGCGGTGTTGTATTGGTTTAAGACCGGCGATCAATCAACGGCCAATTAC GCAATGAACACCTATTTTTGGTCCCGTGAAACGTTGATGATGCGCAATCC CACTTCGCAACTCATTCGTCTAAGCACACGAATTGGCGACGGCGGCGAAG ACCGTGCGTTCCGTGCGCTCAGCGATTTTGCATCCGGTCTCGTGCCGCTA TTACTTCAAACTGAACAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105587:149..619-

>mRNA_M-pyrifera_M_contig105587.1203.1 ID=mRNA_M-pyrifera_M_contig105587.1203.1|Name=mRNA_M-pyrifera_M_contig105587.1203.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig105587:149..619- (Macrocystis pyrifera P11B4 male)
GACGCGACTATTCCGGAATCACTTCGCCAAGAGCTGGAGACGAACACGAT
CCTGATGCGGGAATACGTCTCATCGAACGGTCGACCGGTACAATTGACTA
TCGTTCAAGCGGGCAAGTCGCGCCGCAGCCTGCACTTTCCCGAAGTGTGC
TTTGCCGGGCAAGGTTGGGAAACGGCGAGCAAGGCGCTCATTCCGGTGGG
CGTGTACTTCGTGGGTCAAGGTCTGATTGTGCAAAAAGGCGAAACGCAAG
AAGCGGTGTTGTATTGGTTTAAGACCGGCGATCAATCAACGGCCAATTAC
GCAATGAACACCTATTTTTGGTCCCGTGAAACGTTGATGATGCGCAATCC
CACTTCGCAACTCATTCGTCTAAGCACACGAATTGGCGACGGCGGCGAAG
ACCGTGCGTTCCGTGCGCTCAGCGATTTTGCATCCGGTCTCGTGCCGCTA
TTACTTCAAACTGAACAATAGGACGCGACTATTCCGGAATCACTTCGCCA
AGAGCTGGAGACGAACACGATCCTGATGCGGGAATACGTCTCATCGAACG
GTCGACCGGTACAATTGACTATCGTTCAAGCGGGCAAGTCGCGCCGCAGC
CTGCACTTTCCCGAAGTGTGCTTTGCCGGGCAAGGTTGGGAAACGGCGAG
CAAGGCGCTCATTCCGGTGGGCGTGTACTTCGTGGGTCAAGGTCTGATTG
TGCAAAAAGGCGAAACGCAAGAAGCGGTGTTGTATTGGTTTAAGACCGGC
GATCAATCAACGGCCAATTACGCAATGAACACCTATTTTTGGTCCCGTGA
AACGTTGATGATGCGCAATCCCACTTCGCAACTCATTCGTCTAAGCACAC
GAATTGGCGACGGCGGCGAAGACCGTGCGTTCCGTGCGCTCAGCGATTTT
GCATCCGGTCTCGTGCCGCTATTACTTCAAACTGAACAATAG
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