mRNA_M-pyrifera_M_contig105575.1199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105575.1199.1
Unique NamemRNA_M-pyrifera_M_contig105575.1199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105575.1199.1 vs. uniprot
Match: A0A5A8CE55_CAFRO (Uncharacterized protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CE55_CAFRO)

HSP 1 Score: 73.9 bits (180), Expect = 5.390e-12
Identity = 72/191 (37.70%), Postives = 101/191 (52.88%), Query Frame = 1 
Query:    1 RLEEVEGRSAEEAEKKRREMEATRRV-LDAQVAAKRRMREAEMKFSSSLDREELEALEEAKRXXXXXXXXXXXXXXXXXEEAMAFNAKEALVRGKVAAEERKRDEEMLAATLAREKAEEEAEKRAVEERKRELLEFKKGLAEQMGMEAEAGDRFDAFFKEYEDAQWKKREAVWRAEEERRRLLQEEVLKTR 570
            R +E E ++AE   + R+  EA  RV LDAQVA K+ +    +  +++ D + LE                 XXXXXX       NA+   V  + AAEE  RD   +A+ + RE+ + EAE+             +  L  QM +EAEAGD+FD FF  Y++ +W KREAVW A+ E +RLL EEV +TR
Sbjct:  178 RSQEEEAKAAERL-RTRKAAEARLRVELDAQVAVKQELHRRAVGHAAAADEDALERWRREAEEAEAAAAERKXXXXXXLARTREANARAEEVLRRQAAEEADRDRSRIASIVEREQRQAEAERAXXXXXXXXXXXHRGALERQMAVEAEAGDKFDQFFAAYQEKEWAKREAVWAAQAEAKRLLDEEVARTR 367
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105575.1199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8CE55_CAFRO5.390e-1237.70Uncharacterized protein n=4 Tax=Sar TaxID=2698737 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105575contigM-pyrifera_M_contig105575:1..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size585
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.7258778-CDS-M-pyrifera_M_contig105575:0..5851622815564.7258778-CDS-M-pyrifera_M_contig105575:0..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105575 1..585 -
1692277465.9590435-CDS-M-pyrifera_M_contig105575:0..5851692277465.9590435-CDS-M-pyrifera_M_contig105575:0..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105575 1..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105575.1199.1prot_M-pyrifera_M_contig105575.1199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105575 1..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105575.1199.1

>prot_M-pyrifera_M_contig105575.1199.1 ID=prot_M-pyrifera_M_contig105575.1199.1|Name=mRNA_M-pyrifera_M_contig105575.1199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp
RLEEVEGRSAEEAEKKRREMEATRRVLDAQVAAKRRMREAEMKFSSSLDR
EELEALEEAKRKEAAEEREARERARREREEAMAFNAKEALVRGKVAAEER
KRDEEMLAATLAREKAEEEAEKRAVEERKRELLEFKKGLAEQMGMEAEAG
DRFDAFFKEYEDAQWKKREAVWRAEEERRRLLQEEVLKTRARQMR
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mRNA from alignment at M-pyrifera_M_contig105575:1..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105575.1199.1 ID=mRNA_M-pyrifera_M_contig105575.1199.1|Name=mRNA_M-pyrifera_M_contig105575.1199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig105575:1..585- (Macrocystis pyrifera P11B4 male)
CGGCTGGAGGAAGTGGAGGGGAGGAGCGCAGAGGAGGCCGAGAAGAAACG
GCGGGAAATGGAGGCCACACGGAGAGTGTTGGATGCCCAGGTGGCAGCCA
AGCGGCGAATGCGAGAAGCGGAGATGAAATTCTCGAGCAGTTTGGATCGC
GAGGAACTGGAAGCTTTGGAAGAAGCCAAACGAAAGGAGGCGGCGGAGGA
GAGAGAGGCAAGGGAGAGGGCGAGGCGGGAGAGAGAAGAAGCCATGGCTT
TCAATGCCAAGGAAGCCTTGGTGCGAGGAAAAGTTGCCGCAGAGGAACGG
AAACGAGACGAAGAAATGCTTGCAGCGACGCTTGCGAGGGAAAAAGCCGA
GGAGGAGGCGGAGAAGAGGGCGGTGGAGGAGCGCAAGAGGGAGCTGCTCG
AGTTCAAAAAGGGCTTGGCCGAGCAAATGGGCATGGAAGCCGAGGCTGGG
GACAGGTTCGACGCCTTTTTCAAAGAGTACGAGGATGCGCAATGGAAGAA
ACGAGAGGCAGTGTGGCGCGCGGAGGAGGAGAGGAGGCGGTTGCTGCAAG
AAGAGGTGCTCAAGACGAGGGCGCGCCAAATGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105575:1..585-

>mRNA_M-pyrifera_M_contig105575.1199.1 ID=mRNA_M-pyrifera_M_contig105575.1199.1|Name=mRNA_M-pyrifera_M_contig105575.1199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig105575:1..585- (Macrocystis pyrifera P11B4 male)
CGGCTGGAGGAAGTGGAGGGGAGGAGCGCAGAGGAGGCCGAGAAGAAACG
GCGGGAAATGGAGGCCACACGGAGAGTGTTGGATGCCCAGGTGGCAGCCA
AGCGGCGAATGCGAGAAGCGGAGATGAAATTCTCGAGCAGTTTGGATCGC
GAGGAACTGGAAGCTTTGGAAGAAGCCAAACGAAAGGAGGCGGCGGAGGA
GAGAGAGGCAAGGGAGAGGGCGAGGCGGGAGAGAGAAGAAGCCATGGCTT
TCAATGCCAAGGAAGCCTTGGTGCGAGGAAAAGTTGCCGCAGAGGAACGG
AAACGAGACGAAGAAATGCTTGCAGCGACGCTTGCGAGGGAAAAAGCCGA
GGAGGAGGCGGAGAAGAGGGCGGTGGAGGAGCGCAAGAGGGAGCTGCTCG
AGTTCAAAAAGGGCTTGGCCGAGCAAATGGGCATGGAAGCCGAGGCTGGG
GACAGGTTCGACGCCTTTTTCAAAGAGTACGAGGATGCGCAATGGAAGAA
ACGAGAGGCAGTGTGGCGCGCGGAGGAGGAGAGGAGGCGGTTGCTGCAAG
AAGAGGTGCTCAAGACGAGGGCGCGCCAAATGAGGCGGCTGGAGGAAGTG
GAGGGGAGGAGCGCAGAGGAGGCCGAGAAGAAACGGCGGGAAATGGAGGC
CACACGGAGAGTGTTGGATGCCCAGGTGGCAGCCAAGCGGCGAATGCGAG
AAGCGGAGATGAAATTCTCGAGCAGTTTGGATCGCGAGGAACTGGAAGCT
TTGGAAGAAGCCAAACGAAAGGAGGCGGCGGAGGAGAGAGAGGCAAGGGA
GAGGGCGAGGCGGGAGAGAGAAGAAGCCATGGCTTTCAATGCCAAGGAAG
CCTTGGTGCGAGGAAAAGTTGCCGCAGAGGAACGGAAACGAGACGAAGAA
ATGCTTGCAGCGACGCTTGCGAGGGAAAAAGCCGAGGAGGAGGCGGAGAA
GAGGGCGGTGGAGGAGCGCAAGAGGGAGCTGCTCGAGTTCAAAAAGGGCT
TGGCCGAGCAAATGGGCATGGAAGCCGAGGCTGGGGACAGGTTCGACGCC
TTTTTCAAAGAGTACGAGGATGCGCAATGGAAGAAACGAGAGGCAGTGTG
GCGCGCGGAGGAGGAGAGGAGGCGGTTGCTGCAAGAAGAGGTGCTCAAGA
CGAGGGCGCGCCAAATGAGG
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