mRNA_M-pyrifera_M_contig105464.1170.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105464.1170.1
Unique NamemRNA_M-pyrifera_M_contig105464.1170.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E6ZDL6_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6ZDL6_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 1.980e-55
Identity = 90/151 (59.60%), Postives = 110/151 (72.85%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIASV 453
            I+VL EHGI L LIQ+VI+ L +LEGAR FLD LR  +Q+V+LSDTFEQFA  FM+ LG PHLLCHRL +E+DRI  F PRV D K +AV +YQG  YHVTA+GDSHND+GML  ADA+     P GLPE+YP L     Y +  +WI ++
Sbjct:   40 ISVLSEHGIGLGLIQEVISELDLLEGARDFLDRLRKQHQVVVLSDTFEQFAGHFMDLLGYPHLLCHRLELEDDRITQFVPRVEDAKLKAVASYQGQGYHVTAIGDSHNDIGMLSQADASCLFRAPVGLPEKYPNLHCLEAYHDLSDWIKNI 190          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E7T5D2_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=4 Tax=Actinobacteria TaxID=201174 RepID=A0A2E7T5D2_9ACTN)

HSP 1 Score: 181 bits (458), Expect = 3.210e-55
Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIASVG 456
            I+VL +H I LSLIQ+VI+ L +L GARSFLD+LR   Q+V+LSDTFEQFA  FM+ LG PHLLCHRL ++ DRI +F PR  D K +AV  YQ L YHVTA+GDSHND+GML  ADA+S    P+GLPE+YP+L     Y E  +WI +V 
Sbjct:   40 ISVLAQHDIGLSLIQEVISELDLLVGARSFLDQLRVSYQVVVLSDTFEQFAGHFMDLLGYPHLLCHRLQLDGDRITSFIPRTEDAKLKAVLGYQALGYHVTAIGDSHNDIGMLCQADASSLFRAPEGLPEKYPDLHCLDAYHELSDWIENVA 191          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A520WNX8_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=4 Tax=Acidimicrobiales TaxID=84993 RepID=A0A520WNX8_9ACTN)

HSP 1 Score: 178 bits (452), Expect = 4.030e-54
Identity = 88/150 (58.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIAS 450
            I++L  +GI L+LI++VI+ L  LEGA+ FLD+LR D Q+V+LSDTFEQFA+  M++LG PHLLCH L +E DR+V F  R+ D KR+AVE+YQGL YHVTA+GDSHNDL ML  ADA        GLPE+YP LP    YDE   WIA+
Sbjct:   54 ISILSANGIGLALIREVISTLKPLEGAKEFLDQLRRDYQVVILSDTFEQFADHLMKELGYPHLLCHDLTLEMDRVVEFVARINDAKRKAVESYQGLGYHVTAVGDSHNDLAMLQQADAGCLFRAATGLPEKYPMLPCLEAYDELRNWIAT 203          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E7A439_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E7A439_9ACTN)

HSP 1 Score: 177 bits (449), Expect = 1.150e-53
Identity = 90/148 (60.81%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWI 444
            I+VL E+GI LSLI++VIA L  LEGAR FLD LR   Q+V+LSDTFEQFA+  M++LG PHLLCH L +E DR+V F  R+ D K+RAVE+YQGL YHVTA+GDS+NDLGML  ADA        GLPE+YP L     YDE   WI
Sbjct:   54 ISVLSENGIGLSLIREVIATLQPLEGARDFLDRLRQRYQVVILSDTFEQFADHLMKELGHPHLLCHELTLEADRVVEFVARIEDAKKRAVESYQGLGYHVTAIGDSYNDLGMLQQADAGCLFRAATGLPEKYPMLGCLEAYDELRNWI 201          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A7C7XFH8_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7XFH8_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 4.270e-53
Identity = 89/148 (60.14%), Postives = 108/148 (72.97%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWI 444
            IA+L+E+ IPLSLI+ VI+ L VLEG+R+FLD LR + Q+VLLSDTFEQFA+ FM QLG PHLLCHRL VE  +I  F PRV D KRRAV  YQ L YH+TA+GDSHND+ ML  A+A        GLP++YP+L     YDE  +WI
Sbjct:   40 IAILNEYKIPLSLIRDVISELDVLEGSRAFLDGLRRNYQVVLLSDTFEQFADHFMTQLGYPHLLCHRLIVEAGQITRFVPRVEDAKRRAVLGYQELGYHITAVGDSHNDVNMLQQAEAGCLFRAAPGLPDKYPDLVSLEAYDELTKWI 187          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E1GI98_9EURY (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=4 Tax=cellular organisms TaxID=131567 RepID=A0A2E1GI98_9EURY)

HSP 1 Score: 174 bits (442), Expect = 8.330e-53
Identity = 90/151 (59.60%), Postives = 104/151 (68.87%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIASV 453
            I++L E+ I L+ IQKVI+ L VL  A+ FLD LR+  Q+ LLSDTFE+FA P MEQLGRPHLLCHRL +E DRIV F PR  D KR+AV+AYQ L YHVTA GDSHND+ ML  ADAAS    P  L   Y E P    Y E  EWI S+
Sbjct:   40 ISILTENEIGLTRIQKVISDLDVLRRAKDFLDLLRSRYQVTLLSDTFEEFAGPLMEQLGRPHLLCHRLVLEGDRIVGFEPRTKDAKRKAVQAYQSLGYHVTAFGDSHNDVAMLHQADAASLFRAPSELVATYEEFPRFDTYAELTEWIDSI 190          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E1WMC7_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WMC7_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 2.250e-52
Identity = 87/148 (58.78%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWI 444
            I++L EH IPLSLI++VI+ L V EGAR FLD LR   Q+VLLSDTFE FA  FM +LG+PHLLCH+L+V+ D+I  F PRV D K++AV +YQ L YHVTA+GDSHND+ ML  ADA      P GLP +YP+L     YDE  +WI
Sbjct:   54 ISILSEHQIPLSLIREVISELDVFEGAREFLDRLRQRYQVVLLSDTFEXFAXHFMVRLGQPHLLCHQLSVDGDQIXRFVPRVXDAKKQAVLSYQQLGYHVTAVGDSHNDISMLQQADAGCLFRSPTGLPXKYPDLIPIEAYDELSQWI 201          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E4AME9_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E4AME9_9ACTN)

HSP 1 Score: 172 bits (437), Expect = 4.930e-52
Identity = 87/152 (57.24%), Postives = 109/152 (71.71%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIASVG 456
            I+VL +H I L+LIQ+VI+ L +L GARSFLD+LR   Q+V+LSDTFEQFA  FM+ LG PHLLCHRL ++ DRI +F PR  D K +AV  YQ L YHVTA+GDSHND+GML  AD +     P+GLPE+YP+L     Y E  +WI +V 
Sbjct:   40 ISVLAQHDIGLNLIQEVISELDLLVGARSFLDQLRDRYQVVVLSDTFEQFAGHFMDLLGYPHLLCHRLQLDGDRITSFIPRTEDAKLKAVLGYQALGYHVTAIGDSHNDIGMLGQADVSCLFRAPEGLPEKYPDLHRLDAYHELSDWIENVA 191          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E9XAQ2_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A2E9XAQ2_9ACTN)

HSP 1 Score: 166 bits (421), Expect = 2.140e-49
Identity = 84/151 (55.63%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIASV 453
            +A+LD+H I LSLI+ VI+ L +L GARSFLDELR   Q+V+LSDTFE+FA  F + LG PHLLCH+L VE+D I  F  R+ DPK RAVEAYQ LNYHV+A GDSHND+ ML AAD+       DGL + + +L     Y++ L WI  +
Sbjct:   54 LALLDKHEIKLSLIKNVISDLELLPGARSFLDELRQRYQVVILSDTFEEFASHFSKLLGYPHLLCHKLRVEDDHITGFRLRLNDPKARAVEAYQSLNYHVSAAGDSHNDVTMLKAADSGCLFRAADGLIDHHHDLSSMATYEDLLTWITDL 204          
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Match: A0A2E8GH47_9ACTN (Bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH n=2 Tax=root TaxID=1 RepID=A0A2E8GH47_9ACTN)

HSP 1 Score: 167 bits (423), Expect = 2.810e-49
Identity = 85/148 (57.43%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQFAEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHVTAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWI 444
            I++L EH + LS+I+ VI+ L VLEGAR FLD+LR   Q+VLLSDTFEQFA+ FM QLG PHLLCHRL V++DR+  F PRV D  ++AV  YQ L +HVTA GDSHND+ M   A A      P GL E+YP L     YDE  EWI
Sbjct:   89 ISILTEHQVSLSVIRGVISELPVLEGAREFLDDLRQKYQVVLLSDTFEQFADHFMVQLGHPHLLCHRLDVDDDRVKRFVPRVVDAXKQAVTGYQKLGFHVTAXGDSHNDITMXQQAXAGCLFRSPSGLAEKYPGLVPLEAYDELTEWI 236          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105464.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6ZDL6_9ACTN1.980e-5559.60Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E7T5D2_9ACTN3.210e-5559.21Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A520WNX8_9ACTN4.030e-5458.67Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E7A439_9ACTN1.150e-5360.81Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A7C7XFH8_9ACTN4.270e-5360.14Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E1GI98_9EURY8.330e-5359.60Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E1WMC7_9ACTN2.250e-5258.78Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E4AME9_9ACTN4.930e-5257.24Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E9XAQ2_9ACTN2.140e-4955.63Bifunctional phosphoserine phosphatase/homoserine ... [more]
A0A2E8GH47_9ACTN2.810e-4957.43Bifunctional phosphoserine phosphatase/homoserine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105464contigM-pyrifera_M_contig105464:177..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.1
Seed ortholog evalue6.4e-36
Seed eggNOG ortholog983917.RGE_32950
Preferred namethrH
KEGG rclassRC00002,RC00017
KEGG koko:K02203
KEGG ReactionR00582,R01771
KEGG Pathwayko00260,ko00680,ko01100,ko01110,ko01120,ko01130,ko01230,map00260,map00680,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.haloacid dehalogenase-like hydrolase
EggNOG OGs1KN0J@119065,1MZPG@1224,2VHDT@28216,COG0560@1,COG0560@2
EC2.7.1.39,3.1.3.3
COG Functional cat.E
Best tax levelunclassified Burkholderiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.7762632-CDS-M-pyrifera_M_contig105464:176..6351622815562.7762632-CDS-M-pyrifera_M_contig105464:176..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105464 177..635 -
1692277465.2888818-CDS-M-pyrifera_M_contig105464:176..6351692277465.2888818-CDS-M-pyrifera_M_contig105464:176..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105464 177..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105464.1170.1prot_M-pyrifera_M_contig105464.1170.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105464 177..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105464.1170.1

>prot_M-pyrifera_M_contig105464.1170.1 ID=prot_M-pyrifera_M_contig105464.1170.1|Name=mRNA_M-pyrifera_M_contig105464.1170.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=153bp
IAVLDEHGIPLSLIQKVIAGLGVLEGARSFLDELRADNQLVLLSDTFEQF
AEPFMEQLGRPHLLCHRLAVENDRIVAFSPRVADPKRRAVEAYQGLNYHV
TAMGDSHNDLGMLLAADAASFIHPPDGLPEQYPELPVATNYDEALEWIAS
VG*
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mRNA from alignment at M-pyrifera_M_contig105464:177..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105464.1170.1 ID=mRNA_M-pyrifera_M_contig105464.1170.1|Name=mRNA_M-pyrifera_M_contig105464.1170.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=459bp|location=Sequence derived from alignment at M-pyrifera_M_contig105464:177..635- (Macrocystis pyrifera P11B4 male)
ATCGCCGTCCTCGACGAGCACGGCATCCCGCTCTCGCTCATCCAGAAGGT GATCGCCGGTCTGGGTGTGCTCGAGGGCGCGCGCTCGTTCCTCGACGAAC TGCGGGCCGACAACCAGCTCGTGCTGCTCTCCGACACCTTCGAGCAGTTC GCCGAGCCTTTCATGGAGCAACTCGGCCGCCCCCACCTGTTGTGCCACCG TCTCGCGGTCGAGAACGACCGCATCGTCGCCTTCTCGCCCCGGGTGGCCG ACCCCAAGCGTCGTGCCGTCGAGGCCTACCAGGGCCTCAACTATCACGTC ACCGCGATGGGTGACTCCCACAACGACCTCGGAATGCTGCTGGCCGCCGA CGCTGCGAGCTTCATCCACCCGCCCGACGGTTTGCCCGAGCAGTACCCCG AGCTCCCCGTCGCGACGAACTATGACGAGGCGCTCGAGTGGATCGCCTCG GTCGGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105464:177..635-

>mRNA_M-pyrifera_M_contig105464.1170.1 ID=mRNA_M-pyrifera_M_contig105464.1170.1|Name=mRNA_M-pyrifera_M_contig105464.1170.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=918bp|location=Sequence derived from alignment at M-pyrifera_M_contig105464:177..635- (Macrocystis pyrifera P11B4 male)
ATCGCCGTCCTCGACGAGCACGGCATCCCGCTCTCGCTCATCCAGAAGGT
GATCGCCGGTCTGGGTGTGCTCGAGGGCGCGCGCTCGTTCCTCGACGAAC
TGCGGGCCGACAACCAGCTCGTGCTGCTCTCCGACACCTTCGAGCAGTTC
GCCGAGCCTTTCATGGAGCAACTCGGCCGCCCCCACCTGTTGTGCCACCG
TCTCGCGGTCGAGAACGACCGCATCGTCGCCTTCTCGCCCCGGGTGGCCG
ACCCCAAGCGTCGTGCCGTCGAGGCCTACCAGGGCCTCAACTATCACGTC
ACCGCGATGGGTGACTCCCACAACGACCTCGGAATGCTGCTGGCCGCCGA
CGCTGCGAGCTTCATCCACCCGCCCGACGGTTTGCCCGAGCAGTACCCCG
AGCTCCCCGTCGCGACGAACTATGACGAGGCGCTCGAGTGGATCGCCTCG
GTCGGCTGAATCGCCGTCCTCGACGAGCACGGCATCCCGCTCTCGCTCAT
CCAGAAGGTGATCGCCGGTCTGGGTGTGCTCGAGGGCGCGCGCTCGTTCC
TCGACGAACTGCGGGCCGACAACCAGCTCGTGCTGCTCTCCGACACCTTC
GAGCAGTTCGCCGAGCCTTTCATGGAGCAACTCGGCCGCCCCCACCTGTT
GTGCCACCGTCTCGCGGTCGAGAACGACCGCATCGTCGCCTTCTCGCCCC
GGGTGGCCGACCCCAAGCGTCGTGCCGTCGAGGCCTACCAGGGCCTCAAC
TATCACGTCACCGCGATGGGTGACTCCCACAACGACCTCGGAATGCTGCT
GGCCGCCGACGCTGCGAGCTTCATCCACCCGCCCGACGGTTTGCCCGAGC
AGTACCCCGAGCTCCCCGTCGCGACGAACTATGACGAGGCGCTCGAGTGG
ATCGCCTCGGTCGGCTGA
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