mRNA_M-pyrifera_M_contig105125.1105.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105125.1105.1
Unique NamemRNA_M-pyrifera_M_contig105125.1105.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105125.1105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105125contigM-pyrifera_M_contig105125:133..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.3989215-CDS-M-pyrifera_M_contig105125:132..5371622815559.3989215-CDS-M-pyrifera_M_contig105125:132..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105125 133..537 +
1692277463.6958299-CDS-M-pyrifera_M_contig105125:132..5371692277463.6958299-CDS-M-pyrifera_M_contig105125:132..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105125 133..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105125.1105.1prot_M-pyrifera_M_contig105125.1105.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105125 133..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105125.1105.1

>prot_M-pyrifera_M_contig105125.1105.1 ID=prot_M-pyrifera_M_contig105125.1105.1|Name=mRNA_M-pyrifera_M_contig105125.1105.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
LPDRAWFQDLIKRANDGDAQAQQELRETLDKHPHLARKAGDLGRHAMEQL
IRTITGNDVVLRKSIEAEAQALLDDLVGLNPSKHRHMLATHVVCCWLQVR
QVELVTPPLNDVNSDRFRRWQRKAGNRYGQAVKLL
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mRNA from alignment at M-pyrifera_M_contig105125:133..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105125.1105.1 ID=mRNA_M-pyrifera_M_contig105125.1105.1|Name=mRNA_M-pyrifera_M_contig105125.1105.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig105125:133..537+ (Macrocystis pyrifera P11B4 male)
CTACCCGATCGAGCATGGTTCCAAGACCTGATCAAACGAGCCAATGACGG
TGACGCGCAGGCCCAACAAGAGCTTCGTGAGACCCTGGACAAGCATCCAC
ATCTGGCGCGTAAGGCGGGTGATCTTGGTCGGCACGCCATGGAGCAGTTG
ATCCGGACGATTACTGGAAATGATGTCGTGCTGCGAAAATCGATCGAGGC
AGAAGCTCAGGCGTTGCTAGATGACTTGGTGGGCTTAAACCCATCGAAGC
ACCGTCACATGCTGGCCACGCATGTTGTTTGTTGCTGGTTGCAGGTGCGG
CAAGTTGAATTGGTAACGCCGCCGCTCAACGATGTGAACTCGGACCGGTT
TCGGCGCTGGCAGCGGAAGGCGGGTAATCGTTACGGGCAGGCGGTGAAGT
TGTTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105125:133..537+

>mRNA_M-pyrifera_M_contig105125.1105.1 ID=mRNA_M-pyrifera_M_contig105125.1105.1|Name=mRNA_M-pyrifera_M_contig105125.1105.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig105125:133..537+ (Macrocystis pyrifera P11B4 male)
CTACCCGATCGAGCATGGTTCCAAGACCTGATCAAACGAGCCAATGACGG
TGACGCGCAGGCCCAACAAGAGCTTCGTGAGACCCTGGACAAGCATCCAC
ATCTGGCGCGTAAGGCGGGTGATCTTGGTCGGCACGCCATGGAGCAGTTG
ATCCGGACGATTACTGGAAATGATGTCGTGCTGCGAAAATCGATCGAGGC
AGAAGCTCAGGCGTTGCTAGATGACTTGGTGGGCTTAAACCCATCGAAGC
ACCGTCACATGCTGGCCACGCATGTTGTTTGTTGCTGGTTGCAGGTGCGG
CAAGTTGAATTGGTAACGCCGCCGCTCAACGATGTGAACTCGGACCGGTT
TCGGCGCTGGCAGCGGAAGGCGGGTAATCGTTACGGGCAGGCGGTGAAGT
TGTTACTACCCGATCGAGCATGGTTCCAAGACCTGATCAAACGAGCCAAT
GACGGTGACGCGCAGGCCCAACAAGAGCTTCGTGAGACCCTGGACAAGCA
TCCACATCTGGCGCGTAAGGCGGGTGATCTTGGTCGGCACGCCATGGAGC
AGTTGATCCGGACGATTACTGGAAATGATGTCGTGCTGCGAAAATCGATC
GAGGCAGAAGCTCAGGCGTTGCTAGATGACTTGGTGGGCTTAAACCCATC
GAAGCACCGTCACATGCTGGCCACGCATGTTGTTTGTTGCTGGTTGCAGG
TGCGGCAAGTTGAATTGGTAACGCCGCCGCTCAACGATGTGAACTCGGAC
CGGTTTCGGCGCTGGCAGCGGAAGGCGGGTAATCGTTACGGGCAGGCGGT
GAAGTTGTTA
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