mRNA_M-pyrifera_M_contig105118.1103.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105118.1103.1
Unique NamemRNA_M-pyrifera_M_contig105118.1103.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A813BNK6_9DINO (AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BNK6_9DINO)

HSP 1 Score: 162 bits (409), Expect = 6.290e-48
Identity = 87/154 (56.49%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            HL SLR   RD G I TLL+EA+NER+HLL  LEL        R L+L AQGV  N YF+SYL  PR CHRFVGYLEEEAV+TY+  +  I   E  L +W+  PA +L+K+YW LPEDAT+ DV  A+RADEA+HR+VNH  +E+  + PNPF
Sbjct:   29 HLHSLRTMERDYGWIHTLLEEAENERMHLLTFLELKKPGPAF-RGLVLLAQGVFFNLYFISYLLSPRTCHRFVGYLEEEAVKTYSKCINDI---ETRLPQWREMPATKLSKKYWHLPEDATMEDVIKAVRADEAIHREVNHTLSELKPNEPNPF 178          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A816RUF3_9BILA (Hypothetical protein n=8 Tax=Rotaria TaxID=231623 RepID=A0A816RUF3_9BILA)

HSP 1 Score: 164 bits (414), Expect = 7.880e-47
Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H+KSLR   RD G I TLL EA+NER+HLL  LEL     WL R  +L  QG   NA+FL+YL  PR CHRFVG+LEEEAV TYT  +E IDA    L  W   PA ++AK YW LPE++T+RDV  A+RADEA HR+VNH  A++  +APNPF
Sbjct:  167 HMKSLRTMRRDYGWIHTLLSEAENERMHLLTFLELRQP-GWLFRGFVLLGQGAFFNAFFLTYLISPRVCHRFVGFLEEEAVITYTRCIEDIDA--GRLLAWSNLPAPQIAKTYWRLPENSTMRDVLLAVRADEANHREVNHTLADVGPNAPNPF 317          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A814RW83_9BILA (Hypothetical protein n=3 Tax=Adineta steineri TaxID=433720 RepID=A0A814RW83_9BILA)

HSP 1 Score: 158 bits (400), Expect = 1.600e-46
Identity = 85/154 (55.19%), Postives = 102/154 (66.23%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H+KSLR   RD G I TLL EA+NER+HLL  LEL     W+ R  +L  QGV  NA+F++YL  P  CHRFVG+LEEEAV TYT  L+ +DA    L  W   PA  +AK YW L +DA ++DV  A+RADEA HRQVNH  A+   DAPNPF
Sbjct:    8 HMKSLRTMQRDHGWIHTLLSEAENERMHLLTFLELR-NPGWIFRAFVLLGQGVFFNAFFVTYLISPTICHRFVGFLEEEAVITYTRCLQELDA--GRLPIWSKTPAPSIAKSYWKLKDDAMMKDVLLAVRADEATHRQVNHKLADAGSDAPNPF 158          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A6B2LG20_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG20_9EUKA)

HSP 1 Score: 160 bits (404), Expect = 1.740e-46
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            HLKSLR   RD G I TLL+EA+NER+HLL +LEL   +  L R  +L  QG+ VN +F++Y+  PR CHRFVGYLEEEAVRTY+ L+  I  E+  +  WK++PA E+AK+YW L EDAT+RDV   IRADEA HR VNH ++ +P    NPF
Sbjct:   79 HLKSLRSMQRDHGWIHTLLEEAENERMHLLVALELKRPNP-LFRLSVLLVQGIFVNLFFITYMVSPRYCHRFVGYLEEEAVRTYSKLIGHI--EDGPMSAWKSRPAPEIAKKYWDLREDATMRDVIYVIRADEAHHRLVNHQFSTMPPHQDNPF 229          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A814W800_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A814W800_9BILA)

HSP 1 Score: 162 bits (411), Expect = 1.860e-46
Identity = 88/154 (57.14%), Postives = 106/154 (68.83%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H+KSLR   RD G I TLL EA+NER+HLL  LEL   D W+ R L+L  QGV  NA+FL+YL  PR CHRFVG+LEEEAV TYT  +E +D     L  W    A ++AK YW L E+AT++DV  AIRADEA HR+VNH  A++  DAPNPF
Sbjct:  166 HMKSLRTMRRDYGWIHTLLSEAENERMHLLTFLELRQPD-WIFRSLVLLGQGVFFNAFFLTYLLSPRICHRFVGFLEEEAVITYTRCIEDLDT--GKLPAWLILSAPKIAKNYWKLSENATMKDVLLAIRADEATHREVNHKLADVGPDAPNPF 316          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A7RXL2_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RXL2_NEMVE)

HSP 1 Score: 157 bits (397), Expect = 3.570e-46
Identity = 89/154 (57.79%), Postives = 103/154 (66.88%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H  SLRR  RD G I TLL+EA+NER+HL+ +LEL      L R +IL AQGV VN +F++YL  PR CHRFVGYLEEEAV+TYT  LE ID     L  W T  A ++A  YW L EDA +RDV  AIRADEA HR VNH  + I  D PNPF
Sbjct:   18 HFNSLRRLTRDHGWIHTLLEEAENERMHLMTALELK-RPGILFRGVILAAQGVFVNMFFIAYLTSPRFCHRFVGYLEEEAVKTYTYCLECID--NGKLPTWNTLKAPKIASNYWKLKEDAVMRDVILAIRADEAHHRVVNHTLSSIHLDDPNPF 168          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: UPI000A2A8F42 (alternative oxidase, mitochondrial isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8F42)

HSP 1 Score: 162 bits (409), Expect = 4.410e-46
Identity = 90/154 (58.44%), Postives = 107/154 (69.48%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            HLKSLR+  RD G I TLL+EA+NER+HL+ +LEL    + L R +I+GAQGV VN +F++YL  PR CHRFVGYLEEEAV+TYT  +E ID     L  WK   A  +A  YW L EDAT+RDV  AIRADEA HR VNH  + I  D PNPF
Sbjct:  176 HLKSLRKLSRDHGWIHTLLEEAENERMHLMTALELKQPGT-LFRGVIIGAQGVFVNMFFIAYLLSPRFCHRFVGYLEEEAVKTYTYCIECID--NGKLPVWKNLKAPPIAVNYWKLKEDATMRDVILAIRADEAHHRVVNHTLSSIHLDDPNPF 326          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: UPI001F046237 (alternative oxidase, mitochondrial-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F046237)

HSP 1 Score: 161 bits (408), Expect = 8.310e-46
Identity = 86/154 (55.84%), Postives = 110/154 (71.43%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H  SLRR  RD G I TLL+EA+NER+HL+ +LEL   + +  R ++L  QGV VN +F+SYL  PR CHRFVGYLEEEAVRTYT  +E +D+   D+  W TKPA  +AK+YW L +++T+RDV  AIRADEA HR+VNH +A +  D  NPF
Sbjct:  188 HFHSLRRMRRDHGWIHTLLEEAENERMHLMTALELKKPNIFF-RGMVLMMQGVFVNMFFISYLLSPRFCHRFVGYLEEEAVRTYTHCIEMMDSGALDV--WNTKPAPLIAKKYWRLKDNSTMRDVILAIRADEAHHRKVNHTFASMHLDEQNPF 338          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A814DHN0_9BILA (Hypothetical protein n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A814DHN0_9BILA)

HSP 1 Score: 161 bits (407), Expect = 8.570e-46
Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H+KSLR   RD G I TLL EA+NER+HLL  LEL       + F++LG QGV  NA+FL+YL  P+ CHRFVG+LEEEAV TYT  +E +DA    L  W+  PA ++AK YW L  DA +RDV   IRADEA HRQVNH  A++  +APNPF
Sbjct:  157 HMKSLRTMKRDHGWIHTLLSEAENERMHLLTFLELRQPGYVFRGFVLLG-QGVFFNAFFLTYLLSPQICHRFVGFLEEEAVITYTRCIENLDA--GKLPAWRNLPAPQIAKNYWKLSNDAMIRDVLLVIRADEATHRQVNHKLADVGPNAPNPF 307          
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Match: A0A816HCB9_9BILA (Hypothetical protein n=6 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A816HCB9_9BILA)

HSP 1 Score: 163 bits (412), Expect = 1.330e-45
Identity = 85/154 (55.19%), Postives = 105/154 (68.18%), Query Frame = 1
Query:    1 HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGAQGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGEWKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDAPNPF 462
            H+KSLR   RD G I TLL EA+NER+HLL  LEL     W+ R  +L  QG+  N +FL+YL  P+ CHRFVG+LEEEAV TYT  +E +DA    L  W   PA ++AK+YW L +DA +RDV  A+RADEA HRQVNH  A++  DAPNPF
Sbjct:  254 HMKSLRTMQRDYGWIHTLLSEAENERMHLLTFLELR-NPGWIFRTFVLLGQGIFFNGFFLTYLLSPKICHRFVGFLEEEAVITYTRCIEELDA--GRLPIWSKTPAPQIAKKYWKLSDDAMMRDVLLAVRADEATHRQVNHKLADVGSDAPNPF 404          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105118.1103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813BNK6_9DINO6.290e-4856.49AlxA protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A816RUF3_9BILA7.880e-4757.14Hypothetical protein n=8 Tax=Rotaria TaxID=231623 ... [more]
A0A814RW83_9BILA1.600e-4655.19Hypothetical protein n=3 Tax=Adineta steineri TaxI... [more]
A0A6B2LG20_9EUKA1.740e-4655.84Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A814W800_9BILA1.860e-4657.14Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
A7RXL2_NEMVE3.570e-4657.79Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI000A2A8F424.410e-4658.44alternative oxidase, mitochondrial isoform X1 n=2 ... [more]
UPI001F0462378.310e-4655.84alternative oxidase, mitochondrial-like n=1 Tax=Xe... [more]
A0A814DHN0_9BILA8.570e-4655.84Hypothetical protein n=4 Tax=Adineta steineri TaxI... [more]
A0A816HCB9_9BILA1.330e-4555.19Hypothetical protein n=6 Tax=Rotaria sp. Silwood1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105118contigM-pyrifera_M_contig105118:1..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score161.4
Seed ortholog evalue3.4e-37
Seed eggNOG ortholog109760.SPPG_07666T0
Preferred nameAOX2
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.alternative oxidase
EggNOG OGs28JWX@1,2QSB5@2759,38J5S@33154,3NU2X@4751
COG Functional cat.Q
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.3240433-CDS-M-pyrifera_M_contig105118:0..4651622815559.3240433-CDS-M-pyrifera_M_contig105118:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105118 1..465 +
1692277463.669985-CDS-M-pyrifera_M_contig105118:0..4651692277463.669985-CDS-M-pyrifera_M_contig105118:0..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105118 1..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105118.1103.1prot_M-pyrifera_M_contig105118.1103.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105118 1..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105118.1103.1

>prot_M-pyrifera_M_contig105118.1103.1 ID=prot_M-pyrifera_M_contig105118.1103.1|Name=mRNA_M-pyrifera_M_contig105118.1103.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
HLKSLRRGLRDRGRIVTLLDEAQNERIHLLWSLELHPTDSWLKRFLILGA
QGVAVNAYFLSYLFFPRACHRFVGYLEEEAVRTYTGLLEAIDAEEADLGE
WKTKPAGELAKRYWALPEDATVRDVFAAIRADEAVHRQVNHVYAEIPDDA
PNPF*
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mRNA from alignment at M-pyrifera_M_contig105118:1..465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105118.1103.1 ID=mRNA_M-pyrifera_M_contig105118.1103.1|Name=mRNA_M-pyrifera_M_contig105118.1103.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig105118:1..465+ (Macrocystis pyrifera P11B4 male)
CATTTGAAGTCTCTACGCCGTGGGTTGCGCGATCGTGGACGCATTGTCAC ATTGTTGGATGAGGCACAAAATGAGCGTATCCACTTGTTGTGGAGCTTGG AGCTTCACCCCACAGATTCGTGGCTCAAGCGATTCCTGATTCTTGGAGCC CAGGGAGTTGCTGTGAATGCTTACTTCCTTTCCTACCTCTTCTTTCCACG AGCATGCCATCGTTTCGTTGGCTACCTTGAGGAAGAAGCAGTCCGTACGT ACACTGGGTTGTTGGAAGCGATTGACGCTGAGGAAGCGGACTTGGGAGAG TGGAAGACGAAGCCAGCAGGAGAGCTTGCGAAGAGGTACTGGGCACTCCC AGAGGATGCAACCGTCAGGGACGTCTTTGCAGCAATTCGAGCCGACGAAG CCGTTCACCGACAGGTGAACCATGTCTACGCCGAAATTCCAGACGACGCA CCAAACCCTTTCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105118:1..465+

>mRNA_M-pyrifera_M_contig105118.1103.1 ID=mRNA_M-pyrifera_M_contig105118.1103.1|Name=mRNA_M-pyrifera_M_contig105118.1103.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig105118:1..465+ (Macrocystis pyrifera P11B4 male)
CATTTGAAGTCTCTACGCCGTGGGTTGCGCGATCGTGGACGCATTGTCAC
ATTGTTGGATGAGGCACAAAATGAGCGTATCCACTTGTTGTGGAGCTTGG
AGCTTCACCCCACAGATTCGTGGCTCAAGCGATTCCTGATTCTTGGAGCC
CAGGGAGTTGCTGTGAATGCTTACTTCCTTTCCTACCTCTTCTTTCCACG
AGCATGCCATCGTTTCGTTGGCTACCTTGAGGAAGAAGCAGTCCGTACGT
ACACTGGGTTGTTGGAAGCGATTGACGCTGAGGAAGCGGACTTGGGAGAG
TGGAAGACGAAGCCAGCAGGAGAGCTTGCGAAGAGGTACTGGGCACTCCC
AGAGGATGCAACCGTCAGGGACGTCTTTGCAGCAATTCGAGCCGACGAAG
CCGTTCACCGACAGGTGAACCATGTCTACGCCGAAATTCCAGACGACGCA
CCAAACCCTTTCTAACATTTGAAGTCTCTACGCCGTGGGTTGCGCGATCG
TGGACGCATTGTCACATTGTTGGATGAGGCACAAAATGAGCGTATCCACT
TGTTGTGGAGCTTGGAGCTTCACCCCACAGATTCGTGGCTCAAGCGATTC
CTGATTCTTGGAGCCCAGGGAGTTGCTGTGAATGCTTACTTCCTTTCCTA
CCTCTTCTTTCCACGAGCATGCCATCGTTTCGTTGGCTACCTTGAGGAAG
AAGCAGTCCGTACGTACACTGGGTTGTTGGAAGCGATTGACGCTGAGGAA
GCGGACTTGGGAGAGTGGAAGACGAAGCCAGCAGGAGAGCTTGCGAAGAG
GTACTGGGCACTCCCAGAGGATGCAACCGTCAGGGACGTCTTTGCAGCAA
TTCGAGCCGACGAAGCCGTTCACCGACAGGTGAACCATGTCTACGCCGAA
ATTCCAGACGACGCACCAAACCCTTTCTAA
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