mRNA_M-pyrifera_M_contig105107.1099.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: A0A7X5WTK5_9ACTN (RNB domain-containing ribonuclease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WTK5_9ACTN) HSP 1 Score: 289 bits (740), Expect = 4.150e-97 Identity = 140/177 (79.10%), Postives = 155/177 (87.57%), Query Frame = 1 Query: 103 IDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGLELGAEVTVRLD 633 +DWPD VGYAERVR LRPDTP+RAALLSQAARGLRGAGYVAF HD+P++P HSAIASTYAHVTAP+RRLCDRFANE+V+AHCADR PP WAVEALEELPSLMGAA +RDR+LERAV+D+VEA VL PHVGE F AV+TD+D R R RVQL +PAVVA LPA GL LG VTVRLD Sbjct: 2 VDWPDDVGYAERVRELRPDTPARAALLSQAARGLRGAGYVAFRDHDLPAEPTHSAIASTYAHVTAPLRRLCDRFANEVVIAHCADRPPPGWAVEALEELPSLMGAARERDRSLERAVIDFVEAMVLRPHVGERFDAVVTDLDTARDRGRVQLHDPAVVAHLPARGLTLGQRVTVRLD 178
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: A0A3M2GZ11_ACTSX (RNB domain-containing ribonuclease n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GZ11_ACTSX) HSP 1 Score: 250 bits (638), Expect = 1.300e-77 Identity = 124/212 (58.49%), Postives = 157/212 (74.06%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRG--RVRVQLREPAVVARLPADGLELGAEVTVRL 630 +RIM+DAG+GLLRTLP P+ RT+A +RR+ARALGI+WPD+ YA R+R+LRPDTP+ ALL+QAAR LRGAGY P +HSAIASTYAHVTAP+RRLCDR+ NE+V+A CA R P+WA L+ELP +M A D L+RAVVD +EA +L PHVGETF AV+ D ++ RG R R+QLR+PAV+AR+ + G E+ V L Sbjct: 261 ARIMLDAGIGLLRTLPPPDHRTVAALRRSARALGIEWPDTWSYARRIRTLRPDTPAAIALLAQAARALRGAGYTVIDDGVPPERLVHSAIASTYAHVTAPLRRLCDRYTNEVVLAVCAGREAPTWATGMLDELPRIMARARHLDGQLDRAVVDLMEALLLEPHVGETFRAVVVDTEERRGHHRARIQLRDPAVIARMDDGRVRPGTEIGVAL 472
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: A0A520XYZ2_9ACTN (RNB domain-containing ribonuclease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XYZ2_9ACTN) HSP 1 Score: 247 bits (630), Expect = 1.250e-76 Identity = 130/213 (61.03%), Postives = 160/213 (75.12%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGL-ELGAEVTVRLDE 636 ++IMID G+GLLRTLP P+ RT+ ++RRTARAL IDWP S YA+ VR L P+ P +AL++Q+ARGLRGAGY AF G ++P HSAIAS YAHVTAP+RRL DRFANE V+A CA TPP W VE L ELP L+G A R+ +LER+VVD VEA VL VGE+F +ITDVD+DR R ++QL +PAVVA + DG+ ELG VTV+L E Sbjct: 258 AKIMIDGGIGLLRTLPRPDERTVRELRRTARALDIDWPASAAYADVVRRLDPNDPRESALIAQSARGLRGAGYEAFNG-ELPEHTEHSAIASDYAHVTAPLRRLGDRFANECVLAQCAGSTPPDWVVETLPELPKLLGRARNREGSLERSVVDLVEAAVLQSRVGESFEGIITDVDEDRSRSKIQLVDPAVVAYV--DGVAELGDVVTVQLTE 467
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: H0E4L9_9ACTN (3'-to-5' exoribonuclease RNase R n=1 Tax=Patulibacter medicamentivorans TaxID=1097667 RepID=H0E4L9_9ACTN) HSP 1 Score: 212 bits (540), Expect = 3.520e-63 Identity = 116/212 (54.72%), Postives = 140/212 (66.04%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGLELGAEVTVRLDE 636 +RIM+ G GLLRTLP PEP + ++RR+A ALG+DWP Y E VR+L P T ALL+Q AR LRGAGY AF G P+DP H+AIA+ YAHVTAPIRRLCDR ANE ++AH A R P W AL M AA +R LER +D VEA +LA VGE F V+ DVDD RG + VQLR+PA+ R DGL LG+E+ V + E Sbjct: 260 ARIMLAGGSGLLRTLPAPEPAALERLRRSAAALGVDWPSGRSYPEFVRALDPATAVGGALLTQCARTLRGAGYTAFDGTP-PADPGHAAIAAPYAHVTAPIRRLCDRVANEALLAHAAGRPVPGWVGAALAPASEAMAAAGRRAGALERGAIDLVEALLLADRVGERFTGVVVDVDD-RGAL-VQLRDPAIQGRTTGDGLTLGSEIQVTVRE 468
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: UPI001C3E316D (RNB domain-containing ribonuclease n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E316D) HSP 1 Score: 211 bits (538), Expect = 3.690e-63 Identity = 112/210 (53.33%), Postives = 139/210 (66.19%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGLELGAEVTVRL 630 +RIMID GVGL RTL EPR +A +RR+ARALG+ W + Y + VR+L P P AA +AAR GA Y + D P+H+AIA+ YAHVTAP+RRL DRFANEIV+A C R PP+WAV L+E+ + M A QR+R ERA +D VEA VLAP VGE+F AV+TDV DDR V VQ+ +PAVVA L G ++ RL Sbjct: 229 ARIMIDGGVGLFRTLAPAEPRDLASLRRSARALGVPWAEGARYGDVVRALDPADPHHAAFAVRAARLFGGAAYTPWRREDGTEPPVHAAIAAVYAHVTAPLRRLADRFANEIVLAFCEGREPPAWAVAPLDEIAATMAATGQRERQAERAAIDLVEAAVLAPRVGESFPAVVTDVRDDR--VTVQVADPAVVAPLEDGAATPGERISARL 436
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: A0A7Y2D9U4_9ACTN (RNB domain-containing ribonuclease (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2D9U4_9ACTN) HSP 1 Score: 210 bits (534), Expect = 8.310e-63 Identity = 107/172 (62.21%), Postives = 130/172 (75.58%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVI 516 + +M+ A VGLLRTLP P RT+ +IRR+A ALGI+WP ++ YAERVR L P+ P AALL+QAARGLRGAGYV F G ++P H+AIA+ YAHVTAP+RR+CDRFANEIV+ ADR PP WAV AL+ELPS+MG A RDR+LERAVVD EA LA +G F V+ Sbjct: 259 ASLMVGAKVGLLRTLPEPYDRTVKRIRRSALALGIEWPKAMPYAERVRDLDPNDPKHAALLNQAARGLRGAGYVGFVG-ELPEYTRHAAIAADYAHVTAPLRRVCDRFANEIVLNISADREPPEWAVSALDELPSVMGKARSRDRSLERAVVDLAEAVSLAHRIGHYFPGVV 429
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: A0A7W3QQA3_ACTNM (Exoribonuclease R n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3QQA3_ACTNM) HSP 1 Score: 211 bits (536), Expect = 1.070e-62 Identity = 113/212 (53.30%), Postives = 141/212 (66.51%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGLELGAEVTVRLDE 636 +R+M++ GVGLLRT+P P P + ++RRTA ALGI WP+ Y + VRSL P P+ AA L ++ LRGAGYVAF G P HSA+A+ YAHVTAP+RRL DR+A E+ +A A R P WA EAL LP M A QR +ERA VD VEA +L HVGE+F AV+ D D +RG +VQL +PAVVAR+ + LGA V VRL E Sbjct: 245 ARLMLEGGVGLLRTMPPPRPEALERVRRTAVALGIGWPEGRSYGDVVRSLEPARPAHAAFLYESVALLRGAGYVAFDGAP-PEQAAHSAVAAPYAHVTAPLRRLADRYAAEVCLALAAGRPVPGWAREALPGLPDTMRRALQRSGGVERACVDLVEALLLRDHVGESFDAVVVDTDPERGGGQVQLVDPAVVARVEGERPPLGAPVRVRLLE 455
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: UPI001966D1CB (RNB domain-containing ribonuclease n=1 Tax=Nocardioides sp. SYSU D00038 TaxID=2812554 RepID=UPI001966D1CB) HSP 1 Score: 206 bits (525), Expect = 6.250e-61 Identity = 113/212 (53.30%), Postives = 146/212 (68.87%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRG-RVRVQLREPAVVARLP-ADGLELGAEVTVRL 630 + +M+ A VGLLRTLP P+PR + ++ RTA+ALGI WP Y + VRSL P P+ AA++ R LRG+GY AF G ++P+DP H+A+A+ YAHVTAP+RRL DRFA+E+ +A CA P W EAL LP L+ + +R R E AVVD VEA +LAPHVGETF V+T+VDD G R V ++EPAV AR+ A+ L LG EV V L Sbjct: 257 AALMVYARVGLLRTLPPPDPRDVTRLHRTAQALGIAWPAEQLYPDFVRSLNPAKPTHAAMVVACTRLLRGSGYAAFDG-ELPADPQHAALATEYAHVTAPLRRLGDRFASEVCLALCAGTEVPGWVREALPTLPGLLQDSGRRARQYENAVVDLVEAGLLAPHVGETFTGVVTEVDDREGTRGTVTVQEPAVEARVTGAERLPLGEEVRVEL 467
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: UPI001669B7B1 (RNB domain-containing ribonuclease n=1 Tax=Nocardioides phosphati TaxID=1867775 RepID=UPI001669B7B1) HSP 1 Score: 206 bits (524), Expect = 8.800e-61 Identity = 113/214 (52.80%), Postives = 143/214 (66.82%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRG-RVRVQLREPAVVARLPADG-LELGAEVTVRLDE 636 ++IM+D GVG+LRTLP P+PR +A++RRTA+AL +DWP+ + Y VR+L P P AA+ + R LRGAGYV F G P HSAIA+ YAHVTAP+RRL DR+A E VA CA + P W +E LE +P M + +R ER VVD VEA VLAPHVGE+F AV+ D+D+ + R RV L EPAV A + L LG EV+VRL E Sbjct: 258 AKIMLDGGVGILRTLPDPDPRDVARLRRTAQALKVDWPEGLDYPAFVRTLDPTKPVHAAMANACTRLLRGAGYVGFNGTK-PEQTRHSAIAAEYAHVTAPLRRLVDRYALECCVALCAGQPVPEWVIEKLEVVPETMRESGRRASAYERGVVDLVEAGVLAPHVGESFSAVVVDIDEKQPTRGRVTLAEPAVEADVTGTASLPLGQEVSVRLTE 470
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Match: UPI00194FCE88 (Ribonuclease R n=2 Tax=Sinosporangium siamense TaxID=1367973 RepID=UPI00194FCE88) HSP 1 Score: 206 bits (523), Expect = 1.080e-60 Identity = 108/210 (51.43%), Postives = 138/210 (65.71%), Query Frame = 1 Query: 1 SRIMIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDTPSRAALLSQAARGLRGAGYVAFTGHDIPSDPLHSAIASTYAHVTAPIRRLCDRFANEIVVAHCADRTPPSWAVEALEELPSLMGAASQRDRNLERAVVDYVEAFVLAPHVGETFHAVITDVDDDRGRVRVQLREPAVVARLPADGLELGAEVTVRL 630 +RIM+DA VGLLR LP P ++RR A ALG+ WPD GY E V +L P P++AA L ++ LRGAGYVAF G P+D H+A+A+ YAHVTAP+RRL DR+A E+ +A + P W AL LP++M ++R R ++RA VD VEAFVL VG+TF AV+ DV + R VQL +PAV+AR DGL LG VTVRL Sbjct: 253 ARIMLDAEVGLLRVLPQAGPARTERVRRVAAALGVPWPDGAGYGEVVHTLDPKVPAQAAFLHESRSLLRGAGYVAFDGVP-PADAEHAAVAAPYAHVTAPLRRLADRYATEVCLAVASGEDVPEWVRTALPSLPAIMEVGARRSRGVDRACVDLVEAFVLRDRVGQTFEAVVVDVAEGRPGGMVQLTDPAVIARCDGDGLPLGETVTVRL 461 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105107.1099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig105107.1099.1 >prot_M-pyrifera_M_contig105107.1099.1 ID=prot_M-pyrifera_M_contig105107.1099.1|Name=mRNA_M-pyrifera_M_contig105107.1099.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=209bp MIDAGVGLLRTLPVPEPRTIAQIRRTARALGIDWPDSVGYAERVRSLRPDback to top mRNA from alignment at M-pyrifera_M_contig105107:2..637- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig105107.1099.1 ID=mRNA_M-pyrifera_M_contig105107.1099.1|Name=mRNA_M-pyrifera_M_contig105107.1099.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig105107:2..637- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig105107:2..637- >mRNA_M-pyrifera_M_contig105107.1099.1 ID=mRNA_M-pyrifera_M_contig105107.1099.1|Name=mRNA_M-pyrifera_M_contig105107.1099.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1254bp|location=Sequence derived from alignment at M-pyrifera_M_contig105107:2..637- (Macrocystis pyrifera P11B4 male)back to top |