mRNA_M-pyrifera_M_contig105099.1097.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105099.1097.1
Unique NamemRNA_M-pyrifera_M_contig105099.1097.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A813AMH4_9DINO (CysK protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AMH4_9DINO)

HSP 1 Score: 82.4 bits (202), Expect = 2.130e-15
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 1
Query:    1 LPIEHK--GFVFGLDEWSNPTID---EKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAK-PPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEI 459
            LP++    GF F  +E++ P      E+S + A  S V    A  V++V TVY   ++ST++  +    SP++TA  S +   I+ A+S GLSVAL+++LD +WD+P             IG+GF  AQW  WFASYS+ +L  A+ AA  GGV  F I
Sbjct:  358 LPLDRNSSGFTFLSEEYAPPQFPYGAEESNI-AFQSAVAGLDAGSVQLVRTVYVDGMSSTSVRIRNATDSPIRTATASELGKAISLARSQGLSVALSLLLDFNWDVPYMHPGQANATHSLIGEGFTPAQWSAWFASYSAAVLDTAKAAAAAGGVSTFVI 515          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A5A8E8S6_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E8S6_CAFRO)

HSP 1 Score: 82.4 bits (202), Expect = 2.160e-15
Identity = 61/159 (38.36%), Postives = 89/159 (55.97%), Query Frame = 1
Query:    1 LPIEHK--GFVFGLDEWSNPTID---EKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAK-PPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEI 459
            LP++    GF F  +E++ P      E+S + A  S V    A  V++V TVY   ++ST++  +    SP++TA  S +   I+ A+S GLSVAL+++LD +WD+P             IG+GF  AQW  WFASYS+ +L  A+ AA  GGV  F I
Sbjct:   32 LPLDRNSSGFTFLSEEYAPPQFPYGAEESNI-AFQSAVAGLDAGSVQLVRTVYVDGMSSTSVRIRNATDSPIRTATASELGKAISLARSQGLSVALSLLLDFNWDVPYMHPGQANATHSLIGEGFTPAQWSAWFASYSAAVLDTAKAAAAAGGVSTFVI 189          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A5A8CA53_CAFRO (PALP domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA53_CAFRO)

HSP 1 Score: 82.0 bits (201), Expect = 3.070e-15
Identity = 60/159 (37.74%), Postives = 89/159 (55.97%), Query Frame = 1
Query:    1 LPIEHK--GFVFGLDEWSNPTID---EKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAK-PPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEI 459
            LP++    GF F  +E++ P      E+S + A  S V    A  V++V TVY   ++ST++  +    SP++TA  S +   I+ A+S GLSVAL+++LD +WD+P             IG+GF  AQW  WFASYS+ +L  A+ AA  GGV  F +
Sbjct:  424 LPLDRNSSGFTFLSEEYAPPQFPYGAEESNI-AFQSAVAGLDAGSVQLVRTVYVDGMSSTSVRIRNATDSPIRTATASELGKAISLARSQGLSVALSLLLDFNWDVPYMHPGQANATHSLIGEGFTPAQWSAWFASYSAAVLDTAKAAAAAGGVSTFVV 581          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A7S3B9P2_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B9P2_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 1.360e-12
Identity = 58/148 (39.19%), Postives = 76/148 (51.35%), Query Frame = 1
Query:   19 GFVFGLDEWS-NPTIDEKSALEALTSFVNATGATHVRIVFTVYQASINSTTIY-----AKPPPS--PLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVG 438
            G  F  D +  N T+     L +L    + TGATHV +V T YQ SINST ++     A  PP+    +T  +  + A +  A+ +GL V L   +DP  D  N P   G  WRG IG+ F  +QWE WFASY   LL YA +A   G
Sbjct:  277 GITFTGDRYCPNVTMGSSRGLSSLRHLAS-TGATHVALVVTQYQWSINSTEVFPLFDSADVPPAYYTYKTEKDDDLRAALREARELGLQVLLKPHVDPLED--NTPI--GNTWRGDIGRHFDTSQWEAWFASYGRMLLHYAVMAEEAG 419          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: I7M140_TETTS (Glycoside hydrolase family 5 protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7M140_TETTS)

HSP 1 Score: 71.2 bits (173), Expect = 1.340e-11
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 1
Query:    1 LPIEHKGFVFGLDEWSNPTI--DEKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAKPPPSPLQ-------TAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELA 426
             PI  KG  F  D++  P +  D K A  +L    + TGA +V IV T YQ   NST I+  P  +P++       TA +  +T  I +A  IGL V    +L P  DL  +P      WRG IG  F   QW EWFASY+ ++L +A+++
Sbjct:   45 FPIRMKGITFTDDKYC-PEVPYDSKEAFYSLKQLAS-TGANYVSIVVTFYQKYHNSTVIF--PLYTPIKSDYYTYVTATDEALTKVINYAHQIGLQV----MLKPHIDLIEDPEY----WRGDIGLNFTQTQWNEWFASYTDYILHFAKMS 183          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A399YN45_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A399YN45_9CHLR)

HSP 1 Score: 71.2 bits (173), Expect = 1.640e-11
Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  106 TGATHVRIVFTVYQASINSTTIYAKPPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEIG 462
            TGA  V IV T YQ ++NST I      +P   +P     A + HA +    + L ++L P  DL N+P      WRG+IGQ F  AQW++WFASY +F+  YA +A    GV+ F +G
Sbjct:   81 TGANWVSIVVTQYQDNVNSTAI------APTDGSPTD---ADVIHAIAEAHDLGLKVMLKPHVDLWNDPAH----WRGEIGQNFNAAQWDDWFASYRTFINHYATMAED-NGVEQFAVG 185          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A7C5QCH6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium TaxID=2052149 RepID=A0A7C5QCH6_9BACT)

HSP 1 Score: 66.6 bits (161), Expect = 5.130e-10
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  106 TGATHVRIVFTVYQASINSTTIYAKPPPSPLQTAPNSTITAT---IAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEIG 462
            T A  V ++ T YQ ++NSTTI             NS  T +   + H  S    + L ++L P  DL N+P      WRGQIGQ F +A W++W  SY  F+L YA +AA   GV+ F IG
Sbjct:   67 TNAQWVSLLVTAYQENVNSTTIDY-----------NSAFTPSDESVVHMISFAHQLGLKVMLKPHLDLLNDPNH----WRGQIGQNFNEALWQQWLNSYRQFILHYALMAA-ENGVEQFCIG 172          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A1V6AML6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Aminicenantes bacterium ADurb.Bin147 TaxID=1852831 RepID=A0A1V6AML6_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 7.060e-10
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   16 KGFVFGLDEWSNPTIDEKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAKPPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEIG 462
            KG  F    ++    D   A +AL     A  A  V+I+ T YQA+  ST I      +P     ++++ A I  AK +GL V     L P  DL   P      WRG+IGQGF +A W  WFASY  F++ YA +A  +G  ++F  G
Sbjct:   36 KGIAF--TGYAKDAYDGGGARQALRELA-AANAEWVQILVTGYQATRRSTVIDRTGEETPA----DASLAAIIGFAKELGLKV----FLKPHIDLREEPAG----WRGEIGQGFTEADWAAWFASYREFIVHYAAMAEALG-AEMFSAG 168          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A5J5GBA1_9BACL (1,4-beta-xylanase n=1 Tax=Paenibacillus spiritus TaxID=2496557 RepID=A0A5J5GBA1_9BACL)

HSP 1 Score: 55.5 bits (132), Expect = 3.930e-6
Identity = 49/144 (34.03%), Postives = 68/144 (47.22%), Query Frame = 1
Query:   43 WSNPTIDEKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAKPPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDA----QWEEWFASYSSFLLGYAELAAGVGGVDLFEIG 462
            W N     +SALE++      TGAT + I F   Q + ++T I  +  P    T  +  I   I+ A+S+GL V L  +++             G WR  I     D     +W EWFASY++F+L YAELA   G  DL  IG
Sbjct:   22 WGN-----ESALESMRLMKEETGATWIAIAFGALQDTAHTTEIRFREAP----TVTDEEIEWAISSARSLGLQVCLKPIVN----------CADGTWRAHINFFDKDVPCEPKWSEWFASYTAFMLHYAELAERTG-CDLLCIG 145          
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Match: A0A0S8FPL5_9BACT (GTA_TIM domain-containing protein n=1 Tax=candidate division WOR_3 bacterium SM23_42 TaxID=1703779 RepID=A0A0S8FPL5_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 9.470e-6
Identity = 44/143 (30.77%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   34 LDEWSNPTIDEKSALEALTSFVNATGATHVRIVFTVYQASINSTTIYAKPPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDLPNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDLFEIG 462
            +  W +    +   +E++   + +TGATH+ +V T YQ S+ S +I+       + T  +S +T  I+ AK++G  +    +L P  D+ +      G +RG+I  G  D    +WF SY +F+L YAE+A+    V++F IG
Sbjct:    3 IPSWQSHEYLDSRIIESMV-VLKSTGATHIAVVPTWYQESLESYSIHPT-----VNTPTDSAVTNIISEAKALGYVI----MLKPHVDVED------GSFRGEISPGNTD----QWFISYENFILHYAEIASAED-VEIFCIG 124          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105099.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A813AMH4_9DINO2.130e-1538.36CysK protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A5A8E8S6_CAFRO2.160e-1538.36Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A5A8CA53_CAFRO3.070e-1537.74PALP domain-containing protein n=2 Tax=Cafeteria r... [more]
A0A7S3B9P2_9EUKA1.360e-1239.19Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
I7M140_TETTS1.340e-1137.09Glycoside hydrolase family 5 protein n=1 Tax=Tetra... [more]
A0A399YN45_9CHLR1.640e-1140.34Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A7C5QCH6_9BACT5.130e-1038.52Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]
A0A1V6AML6_9BACT7.060e-1035.57Uncharacterized protein n=1 Tax=Candidatus Aminice... [more]
A0A5J5GBA1_9BACL3.930e-634.031,4-beta-xylanase n=1 Tax=Paenibacillus spiritus T... [more]
A0A0S8FPL5_9BACT9.470e-630.77GTA_TIM domain-containing protein n=1 Tax=candidat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105099contigM-pyrifera_M_contig105099:5..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog5911.EAR94190
Hectar predicted targeting categoryother localisation
EggNOG OGs2EURK@1,2SWVE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size462
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815559.090869-CDS-M-pyrifera_M_contig105099:4..4661622815559.090869-CDS-M-pyrifera_M_contig105099:4..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105099 5..466 -
1692277463.568079-CDS-M-pyrifera_M_contig105099:4..4661692277463.568079-CDS-M-pyrifera_M_contig105099:4..466Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105099 5..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105099.1097.1prot_M-pyrifera_M_contig105099.1097.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105099 5..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105099.1097.1

>prot_M-pyrifera_M_contig105099.1097.1 ID=prot_M-pyrifera_M_contig105099.1097.1|Name=mRNA_M-pyrifera_M_contig105099.1097.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp
LPIEHKGFVFGLDEWSNPTIDEKSALEALTSFVNATGATHVRIVFTVYQA
SINSTTIYAKPPPSPLQTAPNSTITATIAHAKSIGLSVALAMVLDPDWDL
PNNPRSPGGPWRGQIGQGFGDAQWEEWFASYSSFLLGYAELAAGVGGVDL
FEIG
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mRNA from alignment at M-pyrifera_M_contig105099:5..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105099.1097.1 ID=mRNA_M-pyrifera_M_contig105099.1097.1|Name=mRNA_M-pyrifera_M_contig105099.1097.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig105099:5..466- (Macrocystis pyrifera P11B4 male)
TTGCCTATTGAACATAAAGGGTTTGTGTTTGGACTGGATGAATGGAGTAA TCCAACAATAGATGAGAAATCTGCGTTGGAAGCTTTGACATCGTTTGTGA ACGCGACAGGAGCAACACATGTTCGGATCGTCTTCACTGTTTACCAAGCA TCGATCAATTCAACAACAATCTACGCAAAACCACCCCCCTCCCCTCTCCA AACCGCTCCAAATTCAACAATTACTGCGACCATCGCCCATGCGAAGAGTA TTGGGCTCTCAGTGGCTCTTGCAATGGTATTAGATCCCGATTGGGACTTG CCAAATAACCCCCGCTCACCAGGTGGACCTTGGAGAGGTCAGATTGGGCA AGGATTTGGAGATGCGCAATGGGAGGAATGGTTTGCGTCGTATTCCAGTT TTCTCCTCGGGTATGCTGAGCTAGCAGCTGGCGTAGGTGGTGTTGATTTG TTTGAAATTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105099:5..466-

>mRNA_M-pyrifera_M_contig105099.1097.1 ID=mRNA_M-pyrifera_M_contig105099.1097.1|Name=mRNA_M-pyrifera_M_contig105099.1097.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig105099:5..466- (Macrocystis pyrifera P11B4 male)
TTGCCTATTGAACATAAAGGGTTTGTGTTTGGACTGGATGAATGGAGTAA
TCCAACAATAGATGAGAAATCTGCGTTGGAAGCTTTGACATCGTTTGTGA
ACGCGACAGGAGCAACACATGTTCGGATCGTCTTCACTGTTTACCAAGCA
TCGATCAATTCAACAACAATCTACGCAAAACCACCCCCCTCCCCTCTCCA
AACCGCTCCAAATTCAACAATTACTGCGACCATCGCCCATGCGAAGAGTA
TTGGGCTCTCAGTGGCTCTTGCAATGGTATTAGATCCCGATTGGGACTTG
CCAAATAACCCCCGCTCACCAGGTGGACCTTGGAGAGGTCAGATTGGGCA
AGGATTTGGAGATGCGCAATGGGAGGAATGGTTTGCGTCGTATTCCAGTT
TTCTCCTCGGGTATGCTGAGCTAGCAGCTGGCGTAGGTGGTGTTGATTTG
TTTGAAATTGGATTGCCTATTGAACATAAAGGGTTTGTGTTTGGACTGGA
TGAATGGAGTAATCCAACAATAGATGAGAAATCTGCGTTGGAAGCTTTGA
CATCGTTTGTGAACGCGACAGGAGCAACACATGTTCGGATCGTCTTCACT
GTTTACCAAGCATCGATCAATTCAACAACAATCTACGCAAAACCACCCCC
CTCCCCTCTCCAAACCGCTCCAAATTCAACAATTACTGCGACCATCGCCC
ATGCGAAGAGTATTGGGCTCTCAGTGGCTCTTGCAATGGTATTAGATCCC
GATTGGGACTTGCCAAATAACCCCCGCTCACCAGGTGGACCTTGGAGAGG
TCAGATTGGGCAAGGATTTGGAGATGCGCAATGGGAGGAATGGTTTGCGT
CGTATTCCAGTTTTCTCCTCGGGTATGCTGAGCTAGCAGCTGGCGTAGGT
GGTGTTGATTTGTTTGAAATTGGA
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