mRNA_M-pyrifera_M_contig105067.1090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105067.1090.1
Unique NamemRNA_M-pyrifera_M_contig105067.1090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105067.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105067contigM-pyrifera_M_contig105067:181..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog227086.JGI_V11_88571
Hectar predicted targeting categoryother localisation
EggNOG free text desc.-domain-containing protein
EggNOG OGs28H8J@1,2QPMA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.8027425-CDS-M-pyrifera_M_contig105067:180..5911622815558.8027425-CDS-M-pyrifera_M_contig105067:180..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105067 181..591 +
1692277463.4610486-CDS-M-pyrifera_M_contig105067:180..5911692277463.4610486-CDS-M-pyrifera_M_contig105067:180..591Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105067 181..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105067.1090.1prot_M-pyrifera_M_contig105067.1090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105067 181..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105067.1090.1

>prot_M-pyrifera_M_contig105067.1090.1 ID=prot_M-pyrifera_M_contig105067.1090.1|Name=mRNA_M-pyrifera_M_contig105067.1090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
EEGRISAGQPTASLVTASECYFGGCRVWAQHLNAPHVPYSASDALLSMYE
KLGTLDVTVAAKQLSSAVAPYRTTARTAELQERIRSRAPLLLHSKNGRGL
PKLKKNAEALLRGIHVQEAAAIDVALQLGSEAPVNIS
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mRNA from alignment at M-pyrifera_M_contig105067:181..591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105067.1090.1 ID=mRNA_M-pyrifera_M_contig105067.1090.1|Name=mRNA_M-pyrifera_M_contig105067.1090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig105067:181..591+ (Macrocystis pyrifera P11B4 male)
GAGGAGGGAAGGATCTCTGCAGGCCAGCCCACTGCCTCGCTGGTCACAGC
CAGCGAGTGCTACTTTGGCGGCTGTCGCGTGTGGGCACAGCACCTCAACG
CCCCACATGTGCCCTACTCCGCATCGGACGCTCTCCTCTCCATGTACGAG
AAGCTTGGCACGCTCGACGTGACGGTGGCTGCCAAGCAGCTCAGCTCTGC
GGTGGCTCCCTACCGCACCACCGCGAGAACTGCGGAGCTGCAGGAGAGAA
TCCGCAGCCGAGCGCCGCTCCTGCTGCACAGCAAGAACGGCAGAGGCCTC
CCCAAGCTCAAGAAGAATGCAGAGGCCCTCCTCCGCGGTATTCACGTGCA
GGAGGCGGCGGCCATCGACGTGGCACTGCAGCTGGGCAGTGAGGCCCCCG
TCAACATCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105067:181..591+

>mRNA_M-pyrifera_M_contig105067.1090.1 ID=mRNA_M-pyrifera_M_contig105067.1090.1|Name=mRNA_M-pyrifera_M_contig105067.1090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig105067:181..591+ (Macrocystis pyrifera P11B4 male)
GAGGAGGGAAGGATCTCTGCAGGCCAGCCCACTGCCTCGCTGGTCACAGC
CAGCGAGTGCTACTTTGGCGGCTGTCGCGTGTGGGCACAGCACCTCAACG
CCCCACATGTGCCCTACTCCGCATCGGACGCTCTCCTCTCCATGTACGAG
AAGCTTGGCACGCTCGACGTGACGGTGGCTGCCAAGCAGCTCAGCTCTGC
GGTGGCTCCCTACCGCACCACCGCGAGAACTGCGGAGCTGCAGGAGAGAA
TCCGCAGCCGAGCGCCGCTCCTGCTGCACAGCAAGAACGGCAGAGGCCTC
CCCAAGCTCAAGAAGAATGCAGAGGCCCTCCTCCGCGGTATTCACGTGCA
GGAGGCGGCGGCCATCGACGTGGCACTGCAGCTGGGCAGTGAGGCCCCCG
TCAACATCTCCGAGGAGGGAAGGATCTCTGCAGGCCAGCCCACTGCCTCG
CTGGTCACAGCCAGCGAGTGCTACTTTGGCGGCTGTCGCGTGTGGGCACA
GCACCTCAACGCCCCACATGTGCCCTACTCCGCATCGGACGCTCTCCTCT
CCATGTACGAGAAGCTTGGCACGCTCGACGTGACGGTGGCTGCCAAGCAG
CTCAGCTCTGCGGTGGCTCCCTACCGCACCACCGCGAGAACTGCGGAGCT
GCAGGAGAGAATCCGCAGCCGAGCGCCGCTCCTGCTGCACAGCAAGAACG
GCAGAGGCCTCCCCAAGCTCAAGAAGAATGCAGAGGCCCTCCTCCGCGGT
ATTCACGTGCAGGAGGCGGCGGCCATCGACGTGGCACTGCAGCTGGGCAG
TGAGGCCCCCGTCAACATCTCC
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