mRNA_M-pyrifera_M_contig105064.1089.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105064.1089.1
Unique NamemRNA_M-pyrifera_M_contig105064.1089.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A813CCA0_9DINO (GloB2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CCA0_9DINO)

HSP 1 Score: 107 bits (266), Expect = 2.570e-26
Identity = 52/82 (63.41%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            FVGHDYGPGGRE A ETTIGE+ K+NK     T K+ FI+ RS RDA LG PRLL P+L  N+R GH PP E NG SY+K+P
Sbjct:  208 FVGHDYGPGGREVAWETTIGEEKKANKQINTSTDKDAFIKWRSERDATLGAPRLLLPSLQVNLRNGHMPPPESNGKSYMKIP 289          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A7V8QEV9_9GAMM (MBL fold metallo-hydrolase n=1 Tax=Ectothiorhodospiraceae bacterium WFHF3C12 TaxID=1914406 RepID=A0A7V8QEV9_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 2.050e-25
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            FV HDY PGGREY  ETT+GEQ ++N H ++ TT++EF+E+R  RD  L  PRL+ P++  N+RGG  PPAEDNG+SY+KVP
Sbjct:  203 FVLHDYRPGGREYRCETTVGEQRRNNIHVRDETTEDEFVEVRDGRDRTLDLPRLIIPSVQVNMRGGEMPPAEDNGVSYIKVP 284          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: UPI001CC0B15F (MBL fold metallo-hydrolase n=1 Tax=Lysobacter sp. 13A TaxID=2872639 RepID=UPI001CC0B15F)

HSP 1 Score: 104 bits (259), Expect = 2.490e-25
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            FV HDYGPGGRE+A ETTIGEQ +SN H  +GTT E+F+EMR TRDA L  P L+ PA+  NIR G  P  E NG+ Y+K+P
Sbjct:  202 FVCHDYGPGGREFACETTIGEQKRSNIHVHDGTTLEQFVEMRETRDASLAMPTLILPAVQTNIRAGELPEPESNGVRYLKLP 283          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A3E1K6Q3_9GAMM (MBL fold metallo-hydrolase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A3E1K6Q3_9GAMM)

HSP 1 Score: 103 bits (257), Expect = 4.910e-25
Identity = 49/82 (59.76%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            FV HDYGPGGRE   ETT+GEQ   N H   G +++EF+ MR+ RDA LG PRL+ PA+  NIR GHPP  EDNG+SY+K+P
Sbjct:  202 FVCHDYGPGGREVRFETTVGEQKNFNIHVGGGRSEDEFVAMRTKRDAGLGMPRLILPAIQINIRAGHPPDPEDNGVSYLKIP 283          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A6U1VXI4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1VXI4_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 7.550e-25
Identity = 46/83 (55.42%), Postives = 66/83 (79.52%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNG-MSYVKVP 246
            +VGHDY P GRE+  E T+G++   NKH KEG++KE+FI+ RS RD +LGTPRLL+PA+++NIRGG+PPP E+    +++K+P
Sbjct:  205 YVGHDYMPDGREWTTECTVGKERTDNKHVKEGSSKEDFIKFRSERDEKLGTPRLLYPAMHFNIRGGNPPPKEEGAERAFIKLP 287          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A2E7EYG1_9PROT (MBL fold metallo-hydrolase n=5 Tax=Hyphomonadaceae TaxID=69657 RepID=A0A2E7EYG1_9PROT)

HSP 1 Score: 102 bits (255), Expect = 9.350e-25
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 FVGHDYGPGGR-EYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVPQQL 255
            FVGHDY P GR EY  ETT+ EQ   N H  +GT++E+FIEMR+TRDA+L  PRL+ P+L  NIR G  PPAEDNG  Y+K+P  L
Sbjct:  198 FVGHDYLPEGRTEYVWETTVAEQKAKNIHVHDGTSREQFIEMRNTRDAKLAPPRLIMPSLQVNIRAGQLPPAEDNGKQYIKIPVSL 283          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: UPI000644BFA5 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BFA5)

HSP 1 Score: 103 bits (256), Expect = 2.190e-24
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            +V HDY P GRE   +TTIGEQ K NKH K+G T+EEFIEMR+TRDA L  P LL P++  N+R G  P AEDNG+SY+K+P
Sbjct:  275 YVCHDYPPAGREIGFKTTIGEQRKLNKHIKDGITREEFIEMRTTRDATLKAPNLLLPSIQVNVRAGELPKAEDNGISYLKIP 356          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: T0Y532_9ZZZZ (Metallo-beta-lactamase superfamily protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0Y532_9ZZZZ)

HSP 1 Score: 95.5 bits (236), Expect = 1.070e-23
Identity = 43/84 (51.19%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVPQQ 252
            +V HDY PGGR +   ++IGEQ + N H ++G  + +FI MRS RD  LG P LL+P++  N+RGG  PPAE+NG++Y+KVP Q
Sbjct:   20 YVCHDYAPGGRAHRCLSSIGEQRRGNIHVRDGINRGQFIAMRSARDRMLGMPALLYPSIQVNVRGGESPPAENNGLAYLKVPLQ 103          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: F0ZL21_DICPU (Hydroxyacylglutathione hydrolase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZL21_DICPU)

HSP 1 Score: 100 bits (248), Expect = 1.120e-23
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            +V HDY P GR    ETTIGEQ K+NKH K+  +KEEFI+MR+ RDA L  P+LL P++  NIR G  PP EDNG+SY+K+P
Sbjct:  204 YVCHDYPPAGRTITFETTIGEQRKTNKHIKDSVSKEEFIKMRTERDATLKAPQLLLPSIQVNIRAGELPPKEDNGISYIKIP 285          
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Match: A0A0F2R9K2_9PROT (Beta-lactamase n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2R9K2_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.520e-23
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLGTPRLLHPALNWNIRGGHPPPAEDNGMSYVKVP 246
            FVGHDY P  R +A ETT+GEQ + N H K+G T+ +F+ MR+ RDA L  PRL+ P++  N+R G  PPAEDNG+SY+K+P
Sbjct:  204 FVGHDYAPNDRPFAVETTVGEQRRDNIHMKDGVTEADFVAMRTERDATLDMPRLILPSVQINMRAGALPPAEDNGVSYIKIP 285          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105064.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813CCA0_9DINO2.570e-2663.41GloB2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7V8QEV9_9GAMM2.050e-2558.54MBL fold metallo-hydrolase n=1 Tax=Ectothiorhodosp... [more]
UPI001CC0B15F2.490e-2560.98MBL fold metallo-hydrolase n=1 Tax=Lysobacter sp. ... [more]
A0A3E1K6Q3_9GAMM4.910e-2559.76MBL fold metallo-hydrolase n=2 Tax=Proteobacteria ... [more]
A0A6U1VXI4_9EUKA7.550e-2555.42Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A2E7EYG1_9PROT9.350e-2559.30MBL fold metallo-hydrolase n=5 Tax=Hyphomonadaceae... [more]
UPI000644BFA52.190e-2460.98hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
T0Y532_9ZZZZ1.070e-2351.19Metallo-beta-lactamase superfamily protein (Fragme... [more]
F0ZL21_DICPU1.120e-2358.54Hydroxyacylglutathione hydrolase n=1 Tax=Dictyoste... [more]
A0A0F2R9K2_9PROT1.520e-2354.88Beta-lactamase n=1 Tax=Rhodospirillaceae bacterium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105064contigM-pyrifera_M_contig105064:375..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue4.7e-20
Seed eggNOG ortholog5786.XP_003288101.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006089,GO:0008150,GO:0008152,GO:0009056,GO:0009438,GO:0009987,GO:0016787,GO:0016788,GO:0016790,GO:0019243,GO:0019752,GO:0032787,GO:0042180,GO:0042182,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046185,GO:0051596,GO:0061727,GO:0071704,GO:1901575,GO:1901615
EggNOG free text desc.Metallo-beta-lactamase superfamily
EggNOG OGs3XDCK@554915,COG0491@1,KOG0814@2759
COG Functional cat.E
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.7668576-CDS-M-pyrifera_M_contig105064:374..6351622815558.7668576-CDS-M-pyrifera_M_contig105064:374..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105064 375..635 -
1692277463.4513283-CDS-M-pyrifera_M_contig105064:374..6351692277463.4513283-CDS-M-pyrifera_M_contig105064:374..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105064 375..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105064.1089.1prot_M-pyrifera_M_contig105064.1089.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105064 375..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105064.1089.1

>prot_M-pyrifera_M_contig105064.1089.1 ID=prot_M-pyrifera_M_contig105064.1089.1|Name=mRNA_M-pyrifera_M_contig105064.1089.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
FVGHDYGPGGREYAAETTIGEQIKSNKHAKEGTTKEEFIEMRSTRDAQLG
TPRLLHPALNWNIRGGHPPPAEDNGMSYVKVPQQLY*
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mRNA from alignment at M-pyrifera_M_contig105064:375..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105064.1089.1 ID=mRNA_M-pyrifera_M_contig105064.1089.1|Name=mRNA_M-pyrifera_M_contig105064.1089.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig105064:375..635- (Macrocystis pyrifera P11B4 male)
TTCGTTGGTCACGATTACGGACCTGGTGGCCGTGAGTACGCAGCCGAGAC CACCATTGGCGAGCAGATCAAGTCGAACAAGCATGCCAAGGAAGGTACCA CCAAAGAGGAGTTCATCGAAATGCGCAGCACCCGCGACGCGCAGCTGGGC ACGCCTCGGTTGCTGCACCCCGCCCTGAACTGGAACATTCGAGGCGGCCA CCCTCCCCCTGCCGAGGATAACGGCATGTCGTATGTCAAGGTACCCCAGC AGCTGTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105064:375..635-

>mRNA_M-pyrifera_M_contig105064.1089.1 ID=mRNA_M-pyrifera_M_contig105064.1089.1|Name=mRNA_M-pyrifera_M_contig105064.1089.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig105064:375..635- (Macrocystis pyrifera P11B4 male)
TTCGTTGGTCACGATTACGGACCTGGTGGCCGTGAGTACGCAGCCGAGAC
CACCATTGGCGAGCAGATCAAGTCGAACAAGCATGCCAAGGAAGGTACCA
CCAAAGAGGAGTTCATCGAAATGCGCAGCACCCGCGACGCGCAGCTGGGC
ACGCCTCGGTTGCTGCACCCCGCCCTGAACTGGAACATTCGAGGCGGCCA
CCCTCCCCCTGCCGAGGATAACGGCATGTCGTATGTCAAGGTACCCCAGC
AGCTGTACTGATTCGTTGGTCACGATTACGGACCTGGTGGCCGTGAGTAC
GCAGCCGAGACCACCATTGGCGAGCAGATCAAGTCGAACAAGCATGCCAA
GGAAGGTACCACCAAAGAGGAGTTCATCGAAATGCGCAGCACCCGCGACG
CGCAGCTGGGCACGCCTCGGTTGCTGCACCCCGCCCTGAACTGGAACATT
CGAGGCGGCCACCCTCCCCCTGCCGAGGATAACGGCATGTCGTATGTCAA
GGTACCCCAGCAGCTGTACTGA
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