mRNA_M-pyrifera_M_contig105063.1088.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105063.1088.1
Unique NamemRNA_M-pyrifera_M_contig105063.1088.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A7S4KY45_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KY45_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 2.020e-23
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLD 336
            C E   +I  S   CP + + V   L+  V  RFPDS    VGG FFLR++CP  ++P+   ++  G I K +RR   L+ KALQNLSNN+ FGKKE +M+P+N F++  LD
Sbjct:  206 CQEILDIILDSLGICPPSFRMVTKHLQREVVKRFPDSKNTCVGGFFFLRYLCPVLMSPDVLGLID-GPIDKSKRRPLTLICKALQNLSNNIRFGKKEAYMLPVNTFLDDNLD 316          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A7S4IU46_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IU46_9EUKA)

HSP 1 Score: 99.0 bits (245), Expect = 2.950e-22
Identity = 43/109 (39.45%), Postives = 70/109 (64.22%), Query Frame = 1
Query:   40 QCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLDDMRGLQDRMS 366
            QCP  ++++C+ LRE+V   +P+S+   +GG FFLR+I P  V+PE F +V    I    RR  +L+SK +QN+ N + FGKKE +M+P+ND I  ++ ++    D ++
Sbjct:  161 QCPPIIRDLCHELRELVAESYPESTYTVIGGFFFLRYIGPAIVSPEGFDVVD-WKIPPNARRALVLISKVIQNIGNGVEFGKKEEYMLPLNDLIQQKIPEVHDFFDELA 268          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A7S4NUK8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NUK8_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 3.330e-22
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = 1
Query:   46 PVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLDDMRGLQDRM 363
            P  ++ VC  L    KTRFPD     VGGLFFLRF+CP    P    +   G +S   RR  +L+SK L NLSN + FGKKE +M+P+N+F++   +++R   D++
Sbjct:    2 PYPIRQVCRHLSTATKTRFPDGVHAVVGGLFFLRFVCPALTVPGEMGVWD-GELSANARRALLLMSKILMNLSNGVKFGKKEEYMLPMNEFLDKNEENIRMFFDKL 106          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: L8HE58_ACACA (GTPaseactivator protein for Ras-like GTPase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HE58_ACACA)

HSP 1 Score: 99.8 bits (247), Expect = 6.350e-22
Identity = 49/104 (47.12%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   13 FRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFIN 324
            F L+  S +Q P A+KN+ +A ++ V  RFP+     VGG +FLRFICP  VAP  + +V++  ++ + +R  IL+SK LQNLSN++ FG+KEPFM+ +N FIN
Sbjct:  256 FDLLVASLDQFPNAVKNIFHAAQQAVSERFPEMGHQFVGGFYFLRFICPALVAPAAYGLVKSD-LAPENQRTLILISKVLQNLSNHILFGEKEPFMMFMNPFIN 358          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A2A9P347_9HYPO (Ras-GAP domain-containing protein n=1 Tax=Ophiocordyceps unilateralis TaxID=268505 RepID=A0A2A9P347_9HYPO)

HSP 1 Score: 98.6 bits (244), Expect = 1.660e-21
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   22 INGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFI 321
            I  S++  P A + +C+ + E V +RFP++   +VG   FLRFICP  VAPE   +V A   +K+ RR  +L++K +QNL+NN+ FG KEP+M+P+N F+
Sbjct: 1197 ICASSSTMPPAFRKICSIITETVSSRFPNAKYTAVGAFVFLRFICPAIVAPESERLVSAAP-TKEMRRGLLLIAKIIQNLANNVLFGAKEPYMLPLNPFL 1295          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A1Y1WBL7_9FUNG (Ras-GAP domain-containing protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WBL7_9FUNG)

HSP 1 Score: 98.6 bits (244), Expect = 1.670e-21
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFIN 324
            C+     I  S +  P A +++CN +  VV TRFPD+   +VGG  FLRF+CP  VAP+  H + A   + + RR  +L +K   NL+N++PFG KE +M+P+N FIN
Sbjct: 1494 CSLVIDAIVRSVHSMPAAFRSICNMIYRVVTTRFPDAGYTAVGGFIFLRFLCPAIVAPDS-HGICAQIENPEIRRGLLLCTKITHNLANDVPFGNKETYMVPLNRFIN 1600          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: L8HKE4_ACACA (START domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HKE4_ACACA)

HSP 1 Score: 97.8 bits (242), Expect = 3.060e-21
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGT--ISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRL 333
            C+     I  S  QCP+ L+ +C+ L + V  +FP+S    + G FFLRFICP  V+PER+ ++ A    IS + RR  +LVSK +QNL+N + FG+KE  M  IN FI S +
Sbjct: 1134 CSIFLGTITNSIAQCPMPLRVICHHLHKEVVQKFPESKYSVLSGFFFLRFICPAIVSPERYGLIDAEDKEISAECRRGLVLVSKVIQNLANGVEFGEKEQHMTKINRFIASNM 1246          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A086T4S2_ACRC1 (Neurofibromin-like protein n=1 Tax=Acremonium chrysogenum (strain ATCC 11550 / CBS 779.69 / DSM 880 / IAM 14645 / JCM 23072 / IMI 49137) TaxID=857340 RepID=A0A086T4S2_ACRC1)

HSP 1 Score: 97.8 bits (242), Expect = 3.100e-21
Identity = 45/115 (39.13%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   22 INGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLDDMRGLQDRMS 366
            I  SA++ P + + +CN +   V++RFPD+   +VG   FLRF CP  VAP+   +V   T +K  RR  +L++K +QNL+NN+ FG KEP+M+P+N+F+   + D+     ++S
Sbjct: 1315 ICASASRIPASFRKLCNIIVNAVESRFPDAKYTAVGAFIFLRFFCPAIVAPDVEGLVST-TPTKDMRRGLLLIAKVIQNLANNVLFGVKEPYMVPLNEFLAHNVFDITRFIHKIS 1428          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A7S4K9Z3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K9Z3_9EUKA)

HSP 1 Score: 97.4 bits (241), Expect = 3.870e-21
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    1 CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLDDMRGLQDRMS 366
            C E  + + GS N CP  L  + +  R +V+ R+PDSS+++VGG +FLRF+ PC   PE + +    TIS+ QRR   ++SK +QN++N   F  KE FM  +N  I+     ++   D +S
Sbjct:  240 CVELVKAVIGSLNDCPDLLCQILSDTRTLVEKRYPDSSMLAVGGFYFLRFVVPCVATPEHYGMTDLTTISQVQRRALTVISKVIQNMANAKSFDHKEGFMTMMNSTIDELTPSVQKFLDDIS 361          
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Match: A0A0L0DVC6_THETB (Ras-GAP domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DVC6_THETB)

HSP 1 Score: 96.3 bits (238), Expect = 9.770e-21
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 1
Query:    1 CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRFICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFMIPINDFINSRLD 336
            CN   ++I  S +  P +   +   ++  V  R+PD   I+VGG  FLRF CP  V+P  + IV A  +  +++R+ +LV+K LQNL+N   FGKKEP+MIP+N FI+  LD
Sbjct:  221 CNIVVQMIFESLDNVPASFPQLFQFMKAAVLERWPDEEHIAVGGFVFLRFFCPALVSPHVYGIVTAP-LGPREQRSLMLVAKVLQNLANGRHFGKKEPYMIPVNPFIDENLD 331          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105063.1088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KY45_9EUKA2.020e-2344.64Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S4IU46_9EUKA2.950e-2239.45Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4NUK8_9EUKA3.330e-2242.45Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
L8HE58_ACACA6.350e-2247.12GTPaseactivator protein for Ras-like GTPase n=1 Ta... [more]
A0A2A9P347_9HYPO1.660e-2144.00Ras-GAP domain-containing protein n=1 Tax=Ophiocor... [more]
A0A1Y1WBL7_9FUNG1.670e-2142.59Ras-GAP domain-containing protein n=1 Tax=Linderin... [more]
L8HKE4_ACACA3.060e-2143.36START domain containing protein n=1 Tax=Acanthamoe... [more]
A0A086T4S2_ACRC13.100e-2139.13Neurofibromin-like protein n=1 Tax=Acremonium chry... [more]
A0A7S4K9Z3_9EUKA3.870e-2137.70Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A0L0DVC6_THETB9.770e-2141.96Ras-GAP domain-containing protein n=1 Tax=Thecamon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105063contigM-pyrifera_M_contig105063:272..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score103.2
Seed ortholog evalue8.7e-20
Seed eggNOG ortholog78898.MVEG_06112T0
Preferred nameIRA2
KEGG koko:K08052
KEGG Pathwayko01521,ko04010,ko04014,map01521,map04010,map04014
Hectar predicted targeting categoryother localisation
GOsGO:0000302,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005829,GO:0005886,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009636,GO:0009898,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010038,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016021,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031224,GO:0031226,GO:0031235,GO:0031279,GO:0031984,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0042175,GO:0042221,GO:0042493,GO:0042542,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045761,GO:0046578,GO:0046580,GO:0046677,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051336,GO:0051339,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0070301,GO:0070417,GO:0070887,GO:0071236,GO:0071241,GO:0071248,GO:0071944,GO:0097237,GO:0098552,GO:0098562,GO:0098772,GO:0098827,GO:1901700,GO:1901701,GO:1902531,GO:1902532
EggNOG free text desc.GTPase-activator protein for Ras-like GTPases
EggNOG OGs1GSBJ@112252,38EMB@33154,3NX3S@4751,KOG1826@1,KOG1826@2759
COG Functional cat.V
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.7299302-CDS-M-pyrifera_M_contig105063:271..6371622815558.7299302-CDS-M-pyrifera_M_contig105063:271..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105063 272..637 -
1692277463.4408236-CDS-M-pyrifera_M_contig105063:271..6371692277463.4408236-CDS-M-pyrifera_M_contig105063:271..637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105063 272..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105063.1088.1prot_M-pyrifera_M_contig105063.1088.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105063 272..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105063.1088.1

>prot_M-pyrifera_M_contig105063.1088.1 ID=prot_M-pyrifera_M_contig105063.1088.1|Name=mRNA_M-pyrifera_M_contig105063.1088.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=122bp
CNEAFRLINGSANQCPVALKNVCNALREVVKTRFPDSSLISVGGLFFLRF
ICPCFVAPERFHIVQAGTISKQQRRNTILVSKALQNLSNNLPFGKKEPFM
IPINDFINSRLDDMRGLQDRMS
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mRNA from alignment at M-pyrifera_M_contig105063:272..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105063.1088.1 ID=mRNA_M-pyrifera_M_contig105063.1088.1|Name=mRNA_M-pyrifera_M_contig105063.1088.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=366bp|location=Sequence derived from alignment at M-pyrifera_M_contig105063:272..637- (Macrocystis pyrifera P11B4 male)
TGCAACGAAGCATTCCGTCTCATCAACGGAAGTGCCAACCAGTGCCCAGT GGCGCTGAAGAACGTCTGCAACGCACTCCGCGAGGTCGTCAAGACCCGCT TTCCTGACAGCAGCCTCATCAGTGTTGGTGGCCTGTTCTTCCTGCGCTTC ATCTGCCCTTGCTTTGTGGCGCCGGAGCGGTTCCACATCGTCCAAGCGGG AACCATCTCCAAGCAGCAGCGTCGCAACACCATTCTGGTCTCCAAGGCTC TGCAGAACCTGAGCAACAACCTCCCCTTCGGCAAGAAGGAGCCCTTCATG ATCCCCATCAACGACTTCATCAATTCGAGGTTGGACGACATGCGCGGTCT CCAGGACCGCATGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105063:272..637-

>mRNA_M-pyrifera_M_contig105063.1088.1 ID=mRNA_M-pyrifera_M_contig105063.1088.1|Name=mRNA_M-pyrifera_M_contig105063.1088.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig105063:272..637- (Macrocystis pyrifera P11B4 male)
TGCAACGAAGCATTCCGTCTCATCAACGGAAGTGCCAACCAGTGCCCAGT
GGCGCTGAAGAACGTCTGCAACGCACTCCGCGAGGTCGTCAAGACCCGCT
TTCCTGACAGCAGCCTCATCAGTGTTGGTGGCCTGTTCTTCCTGCGCTTC
ATCTGCCCTTGCTTTGTGGCGCCGGAGCGGTTCCACATCGTCCAAGCGGG
AACCATCTCCAAGCAGCAGCGTCGCAACACCATTCTGGTCTCCAAGGCTC
TGCAGAACCTGAGCAACAACCTCCCCTTCGGCAAGAAGGAGCCCTTCATG
ATCCCCATCAACGACTTCATCAATTCGAGGTTGGACGACATGCGCGGTCT
CCAGGACCGCATGAGCTGCAACGAAGCATTCCGTCTCATCAACGGAAGTG
CCAACCAGTGCCCAGTGGCGCTGAAGAACGTCTGCAACGCACTCCGCGAG
GTCGTCAAGACCCGCTTTCCTGACAGCAGCCTCATCAGTGTTGGTGGCCT
GTTCTTCCTGCGCTTCATCTGCCCTTGCTTTGTGGCGCCGGAGCGGTTCC
ACATCGTCCAAGCGGGAACCATCTCCAAGCAGCAGCGTCGCAACACCATT
CTGGTCTCCAAGGCTCTGCAGAACCTGAGCAACAACCTCCCCTTCGGCAA
GAAGGAGCCCTTCATGATCCCCATCAACGACTTCATCAATTCGAGGTTGG
ACGACATGCGCGGTCTCCAGGACCGCATGAGC
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