mRNA_M-pyrifera_M_contig105059.1086.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105059.1086.1
Unique NamemRNA_M-pyrifera_M_contig105059.1086.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A6H5JCR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR2_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.210e-34
Identity = 70/143 (48.95%), Postives = 98/143 (68.53%), Query Frame = 1
Query:   37 LSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATFL 465
            LS+ + D  + LLR    SR  V++ M FAL+ A A+A+VV  L  SL +  TP   K+ARLY LSD+L+NS A V  AS+YR  LQK LPE+F+ L   F  ++GR T+ ++ DR+M +LAAWD+WS++PPLY +GL A+F+
Sbjct:  637 LSDKDFDAFSALLRGLTNSRAKVKEAMGFALDHADASADVVGVLKESLLVPETPIHVKIARLYLLSDILHNSSAPVKKASSYRTHLQKGLPEIFDGLNEAFRGVEGRMTAKQVEDRIMALLAAWDNWSIYPPLYITGLEASFM 779          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S3UX26_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX26_HETAK)

HSP 1 Score: 128 bits (322), Expect = 8.500e-32
Identity = 73/152 (48.03%), Postives = 103/152 (67.76%), Query Frame = 1
Query:   13 RGRGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHT--IQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATF 462
            RGR    AL++ E D+L+ +LR    SR  +++ M FAL+ A A+ EVV+ LA SL L++TPAP K+ARL+ LSD+L+NS A V +A++YR  LQ  LP+VF++LR        +GR ++     +VMRVL  W+ WSL+PPL+ SGL ATF
Sbjct:  326 RGRAAKTALTDDEYDQLSDMLRGLTNSRRKIKEAMGFALDHADASEEVVQLLAESLGLKATPAPVKVARLHLLSDILHNSSAPVRHAASYRTRLQDALPQVFDALRLAREAEEAKGRMSAQSFESKVMRVLGVWEGWSLYPPLFISGLEATF 477          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: L8HJJ2_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HJJ2_ACACA)

HSP 1 Score: 125 bits (315), Expect = 1.580e-30
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   10 RRGRGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATFLCP 471
            R+G+G    L+E + D+   LLR     R  +R VM FA++ + AA E+V+ L  +LTL+ TP P K+ARL+ +SD+L+NS A+V NA  YR+L QK LP VFES  +      GR ++ +++++VMRVL  W+ WS++P  + + L  TFL P
Sbjct:  737 RKGKG----LTEEQRDDFEDLLRGLTTHRQRIRDVMGFAIDNSEAAGEIVQVLTEALTLDETPIPTKIARLFLVSDILHNSTAAVRNAHAYRSLFQKQLPNVFESFSTALRNASGRMSAEQLKEQVMRVLRVWEAWSVYPQPFLTTLHETFLRP 886          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S2WJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJA8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.710e-30
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   19 RGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQ--GRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATF 462
            RGGG +L+  E DEL   L+    SR  +++ M FAL+ A A+ EVV+ L  SL L  TP   KLARLY LSD+L+NS A V +AS YR LLQ  LP++FE L   F  ++  GR ++  + ++V+ +L  W+ WSL+PP Y +GL ATF
Sbjct:  521 RGGGGSLANHEYDELQDRLQTLSTSRQTIKEAMGFALDHAEASQEVVKLLKESLLLGETPISVKLARLYLLSDILHNSSAPVQHASTYRTLLQACLPQIFEHLNRIFRDVERLGRMSARSLEEKVLALLGVWEQWSLYPPTYITGLEATF 670          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S2WJ81_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJ81_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.930e-30
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   19 RGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQ--GRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATF 462
            RGGG +L+  E DEL   L+    SR  +++ M FAL+ A A+ EVV+ L  SL L  TP   KLARLY LSD+L+NS A V +AS YR LLQ  LP++FE L   F  ++  GR ++  + ++V+ +L  W+ WSL+PP Y +GL ATF
Sbjct:  521 RGGGGSLANHEYDELQDRLQTLSTSRQTIKEAMGFALDHAEASQEVVKLLKESLLLGETPISVKLARLYLLSDILHNSSAPVQHASTYRTLLQACLPQIFEHLNRIFRDVERLGRMSARSLEEKVLALLGVWEQWSLYPPTYITGLEATF 670          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S0LSB7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSB7_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 1.830e-29
Identity = 58/134 (43.28%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   28 GLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFP 429
            G  L+E E D+L  +LR   + R  +++ M F ++KAAA+ E+V  +  +L+L  TP P+K+ARL+ +SD+L+NS A+V NAS+YR+  Q  LP +F SL +C+  I  R     M+D+V++VL  W  WSLFP
Sbjct:   19 GRELTEDERDDLEDMLRSLVVERAIIKECMGFCISKAAASGEIVETITEALSLSETPVPKKIARLFLVSDILHNSSAAVPNASSYRSHFQNSLPAIFLSLHACYKKITTRMGIETMKDQVVKVLHIWQAWSLFP 152          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S2P5M8_BIGNA (Hypothetical protein (Fragment) n=1 Tax=Bigelowiella natans TaxID=227086 RepID=A0A7S2P5M8_BIGNA)

HSP 1 Score: 112 bits (279), Expect = 5.450e-28
Identity = 60/137 (43.80%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   19 RGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFP 429
            RG    L   E DE    LR   L++  +   M FAL+ A  A E+V  +  SL+L+ TP P+K+ARL+ +SD+LYNS A V NAS YR   +  LP++FE L   + +I+GR T++ MR+RV +VL  W  WSL+P
Sbjct:   65 RGSSRRLRSRERDEFEDRLRGLSLNKTKIAYGMGFALDHAEEAKEIVEIITESLSLDETPIPKKVARLFLVSDILYNSTAPVRNASAYRTEFRDKLPKIFECLHRTYKSIEGRITANAMRERVTKVLRVWQGWSLYP 201          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A7S0ITC6_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ITC6_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.690e-27
Identity = 58/134 (43.28%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   28 GLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFP 429
            G  L+E E D+L  +LR   + R  +++ M F ++KAAA+ E+V  +  +L+L  TP P+K+ARL+ +SDVL+NS A+V NAS+YR+  Q  LP +F SL  C+  I  R     M+++V++VL  W  WSLFP
Sbjct:  522 GRELTEDERDDLEDMLRSLVVERASIKECMGFCISKAAASGEIVETITEALSLSETPVPKKIARLFLVSDVLHNSSAAVPNASSYRSHFQGELPAIFSSLHECYKNITSRMGIETMKEQVVKVLHIWQAWSLFP 655          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A3B3H4L3_ORYLA (U2 snRNP associated SURP domain containing n=123 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3B3H4L3_ORYLA)

HSP 1 Score: 116 bits (290), Expect = 3.640e-27
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   37 LSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATFL 465
            L E E D+L  +LR     R  V + M F LN A AA E+V  +A SL++  TP P+K+ARLY +SDVLYNS A VSNAS YR   +  L ++F  L + + TIQG   S   + RVM    AW+DW+++P  Y   L   FL
Sbjct:  468 LKEDERDKLEEMLRGLSPKRGDVAEAMLFCLNHAEAAEEIVECIAESLSILKTPLPKKIARLYLVSDVLYNSSAKVSNASYYRKYFETKLCQIFSDLNATYKTIQGHLQSENFKQRVMSCFRAWEDWAVYPDPYLIKLQNIFL 610          
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Match: A0A3P9HS90_ORYLA (U2 snRNP-associated SURP domain containing n=6 Tax=Oryzias TaxID=8089 RepID=A0A3P9HS90_ORYLA)

HSP 1 Score: 116 bits (290), Expect = 3.640e-27
Identity = 64/143 (44.76%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   37 LSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAAEVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQKHLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGLAATFL 465
            L E E D+L  +LR     R  V + M F LN A AA E+V  +A SL++  TP P+K+ARLY +SDVLYNS A VSNAS YR   +  L ++F  L + + TIQG   S   + RVM    AW+DW+++P  Y   L   FL
Sbjct:  468 LKEDERDKLEEMLRGLSPKRGDVAEAMLFCLNHAEAAEEIVECIAESLSILKTPLPKKIARLYLVSDVLYNSSAKVSNASYYRKYFETKLCQIFSDLNATYKTIQGHLQSENFKQRVMSCFRAWEDWAVYPDPYLIKLQNIFL 610          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105059.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCR2_9PHAE5.210e-3448.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3UX26_HETAK8.500e-3248.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
L8HJJ2_ACACA1.580e-3042.86RNA recognition motif domain containing protein n=... [more]
A0A7S2WJA8_9STRA2.710e-3046.67Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2WJ81_9STRA2.930e-3046.67Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0LSB7_9EUKA1.830e-2943.28Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S2P5M8_BIGNA5.450e-2843.80Hypothetical protein (Fragment) n=1 Tax=Bigelowiel... [more]
A0A7S0ITC6_9EUKA2.690e-2743.28Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A3B3H4L3_ORYLA3.640e-2744.76U2 snRNP associated SURP domain containing n=123 T... [more]
A0A3P9HS90_ORYLA3.640e-2744.76U2 snRNP-associated SURP domain containing n=6 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105059contigM-pyrifera_M_contig105059:5..540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.2
Seed ortholog evalue2.7e-29
Seed eggNOG ortholog3218.PP1S137_118V6.1
KEGG koko:K12842
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.U2 snRNP-associated SURP motif-containing
EggNOG OGs37Q4Y@33090,3GEQ0@35493,KOG0151@1,KOG0151@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Exons2
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.606748-CDS-M-pyrifera_M_contig105059:4..1251622815558.606748-CDS-M-pyrifera_M_contig105059:4..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105059 5..125 -
1692277463.3885655-CDS-M-pyrifera_M_contig105059:4..1251692277463.3885655-CDS-M-pyrifera_M_contig105059:4..125Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105059 5..125 -
1622815558.6171675-CDS-M-pyrifera_M_contig105059:190..5401622815558.6171675-CDS-M-pyrifera_M_contig105059:190..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105059 191..540 -
1692277463.398603-CDS-M-pyrifera_M_contig105059:190..5401692277463.398603-CDS-M-pyrifera_M_contig105059:190..540Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105059 191..540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105059.1086.1prot_M-pyrifera_M_contig105059.1086.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105059 5..540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105059.1086.1

>prot_M-pyrifera_M_contig105059.1086.1 ID=prot_M-pyrifera_M_contig105059.1086.1|Name=mRNA_M-pyrifera_M_contig105059.1086.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=157bp
AASRRGRGGGLALSEAEEDELAGLLRHAELSRVHVRKVMEFALNKAAAAA
EVVRALAASLTLESTPAPRKLARLYALSDVLYNSGASVSNASNYRALLQK
HLPEVFESLRSCFHTIQGRATSSRMRDRVMRVLAAWDDWSLFPPLYTSGL
AATFLCP
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mRNA from alignment at M-pyrifera_M_contig105059:5..540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105059.1086.1 ID=mRNA_M-pyrifera_M_contig105059.1086.1|Name=mRNA_M-pyrifera_M_contig105059.1086.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=536bp|location=Sequence derived from alignment at M-pyrifera_M_contig105059:5..540- (Macrocystis pyrifera P11B4 male)
GCAGCGTCTCGCCGTGGTCGCGGAGGTGGACTGGCGTTGAGTGAGGCGGA AGAAGACGAGCTGGCCGGTCTGCTGCGCCACGCTGAGTTGTCTCGCGTCC ATGTGCGCAAGGTGATGGAGTTTGCCCTGAACAAAGCTGCGGCGGCTGCA GAGGTGGTGCGTGCACTGGCCGCGTCGCTGACGCTGGAGAGCACGCCAGC CCCGCGCAAGCTCGCCAGGCTGTATGCGCTCAGCGACGTGCTGTACAACA GCGGCGCGTCGGTGAGCAATGCGAGCAACTACCGGGCGCTGCTGCAGAAG CACCTGCCGGAAGTGTTTGAGAGCCTCCGCTCGTGCTTCCACACCATCCA GTACGTGTGGGGTGGCAGGGGATGGGAGCGTACACACAACATGCACGCTC ACGAAACACCCACAGAGGCAGAGCTACGTCGTCACGTATGCGCGATCGAG TGATGCGAGTGCTTGCCGCTTGGGATGACTGGTCGCTCTTCCCGCCGCTG TACACATCCGGATTGGCTGCAACGTTCTTGTGTCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105059:5..540-

>mRNA_M-pyrifera_M_contig105059.1086.1 ID=mRNA_M-pyrifera_M_contig105059.1086.1|Name=mRNA_M-pyrifera_M_contig105059.1086.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=942bp|location=Sequence derived from alignment at M-pyrifera_M_contig105059:5..540- (Macrocystis pyrifera P11B4 male)
GCAGCGTCTCGCCGTGGTCGCGGAGGTGGACTGGCGTTGAGTGAGGCGGA
AGAAGACGAGCTGGCCGGTCTGCTGCGCCACGCTGAGTTGTCTCGCGTCC
ATGTGCGCAAGGTGATGGAGTTTGCCCTGAACAAAGCTGCGGCGGCTGCA
GAGGTGGTGCGTGCACTGGCCGCGTCGCTGACGCTGGAGAGCACGCCAGC
CCCGCGCAAGCTCGCCAGGCTGTATGCGCTCAGCGACGTGCTGTACAACA
GCGGCGCGTCGGTGAGCAATGCGAGCAACTACCGGGCGCTGCTGCAGAAG
CACCTGCCGGAAGTGTTTGAGAGCCTCCGCTCGTGCTTCCACACCATCCA
GCAGCGTCTCGCCGTGGTCGCGGAGGTGGACTGGCGTTGAGTGAGGCGGA
AGAAGACGAGCTGGCCGGTCTGCTGCGCCACGCTGAGTTGTCTCGCGTCC
ATGTGCGCAAGGTGATGGAGTTTGCCCTGAACAAAGCTGCGGCGGCTGCA
GAGGTGGTGCGTGCACTGGCCGCGTCGCTGACGCTGGAGAGCACGCCAGC
CCCGCGCAAGCTCGCCAGGCTGTATGCGCTCAGCGACGTGCTGTACAACA
GCGGCGCGTCGGTGAGCAATGCGAGCAACTACCGGGCGCTGCTGCAGAAG
CACCTGCCGGAAGTGTTTGAGAGCCTCCGCTCGTGCTTCCACACCATCCA
AGGCAGAGCTACGTCGTCACGTATGCGCGATCGAGTGATGCGAGTGCTTG
CCGCTTGGGATGACTGGTCGCTCTTCCCGCCGCTGTACACATCCGGATTG
GCTGCAACGTTCTTGTGTCCCAGGCAGAGCTACGTCGTCACGTATGCGCG
ATCGAGTGATGCGAGTGCTTGCCGCTTGGGATGACTGGTCGCTCTTCCCG
CCGCTGTACACATCCGGATTGGCTGCAACGTTCTTGTGTCCC
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