mRNA_M-pyrifera_M_contig105058.1085.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105058.1085.1
Unique NamemRNA_M-pyrifera_M_contig105058.1085.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A7Y2II31_9ACTN (MFS transporter n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2II31_9ACTN)

HSP 1 Score: 100 bits (250), Expect = 4.170e-22
Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = 1
Query:   19 VTIAATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSKPKLSHAYRFLANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVPAATL 486
            V + A  DPV+EANR+AL+VD+  +D+Y  A +   ++NQA+ L G+A GG+L A +G  G L  N  +F+ SA+ +  I    +++R      L  A RFL +DRVS+IA+ TT       M IE+QA V+G +   L+D   G+LAA+VPA TL
Sbjct:  107 VALVAVIDPVWEANRSALLVDVASDDEYAPAQKFVTSVNQASTLVGWALGGVLVAAVGTVGTLWFNAGSFVVSAMFVGGISVPKDSERPHRSGSLRAAVRFLRSDRVSLIAIVTTVGLTIPGMGIETQAPVFGRE-AGLADQWIGVLAAMVPAVTL 261          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A3N5KCK1_9ACTN (MFS transporter (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KCK1_9ACTN)

HSP 1 Score: 60.5 bits (145), Expect = 8.330e-8
Identity = 46/136 (33.82%), Postives = 72/136 (52.94%), Query Frame = 1
Query:   67 ALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSKPKLSHAYRFLANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVP 474
            AL+ + VP + YP A+ +A  ++Q   +AG+  GG+L AL+G  GAL +N ++F+ SALLL+++          S+  L      +  D ++  AV         A+  ES A VY  + +   D G G+LAA VP
Sbjct:    1 ALLPETVPPNQYPDALALATIVSQVTTVAGYLLGGVLVALIGTRGALVVNALSFVASALLLTRLEVGRTPASKSSRITLRQGASAIYRDVMTRRAVLFFASVNLGAIIPESLATVYALEHLRSGDLGPGILAAAVP 136          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A7G8WG87_9ACTN (MFS transporter n=1 Tax=Nakamurella sp. PAMC28650 TaxID=2762325 RepID=A0A7G8WG87_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 6.460e-7
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   49 FEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLL 249
            ++A  +AL+VD++P+ DYP  + +  A +QAAQLAGFA GGL  A +G   ALA++  TFL SA+++
Sbjct:  134 WKAAESALVVDILPKSDYPMGLGLRSATSQAAQLAGFAVGGLAVAAIGPRTALAVDAATFLVSAVVI 200          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A3A3YTL6_9ACTN (MFS transporter n=2 Tax=Vallicoccus soli TaxID=2339232 RepID=A0A3A3YTL6_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 6.530e-7
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    7 LVIVVTIAATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLL 249
            L++++ +A    P F A R A + D++P D Y     V     Q AQ AGFA GGLL A+LGA GALAL+ VTFL SA L+
Sbjct:  129 LLLLLLLAELCAPPFAAARAAALPDVLPGDRYVVGSAVTTVTTQVAQAAGFALGGLLVAVLGARGALALDAVTFLASAALV 209          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A640UR74_9ACTN (MFS transporter n=1 Tax=Streptomyces tubercidicus TaxID=47759 RepID=A0A640UR74_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 8.930e-7
Identity = 56/157 (35.67%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   25 IAATADPVFEANRTALIVDLVPEDD-YPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSKPK------LSHAYRFLANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVP 474
            + A   PVF   R A + +++ E + +     V   +NQ+AQLAGFA+GGLL A++     LAL  VTFL SALLL ++ TR    R+G + +      L    R LA+ RV  + +  T++  A  +  E+  V Y G ++    AG GLL   +P
Sbjct:  163 VLAAIAPVFAGTRAATLGEILGEGELFVLGRSVIRIVNQSAQLAGFAAGGLLLAVVSPRAVLALTAVTFLGSALLL-RLGTRARPARNGVRGEALLGASLGGVRRLLADRRVRALLL-LTWLPPAFVVIPEALLVPYAG-LLGTGPAGAGLLMCAMP 316          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: UPI001FE9BFBF (MFS transporter n=1 Tax=Kribbella qitaiheensis TaxID=1544730 RepID=UPI001FE9BFBF)

HSP 1 Score: 57.0 bits (136), Expect = 1.480e-6
Identity = 60/168 (35.71%), Postives = 85/168 (50.60%), Query Frame = 1
Query:   10 VIVVTIAATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQ-IRTRTETQRSGSKPK------LSHAYRFLANDR-----VSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVPA 477
            V+++ +   A P F++ RTAL+  ++  D Y +A  V+    QAAQLAGF +GG + A LGAS ALALN  +F  SA+LL   +  R      GS  +      LS   R + NDR      ++I V   ++TV   +A    A V GG +        G+L A  PA
Sbjct:  117 VLLIAVQLLAAP-FQSARTALMATIMTGDKYKAATGVSAITGQAAQLAGFVTGGTIVAALGASQALALNAASFAISAVLLQLGVGERPVPSGDGSAGRPSWWGSLSAGARLVWNDRRLRYLTALICVPGFYITVE-GLAAPYAASVGGGPV------AVGILFAANPA 276          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A2B8AS87_9ACTN (MFS transporter n=1 Tax=Streptomyces sp. Ru87 TaxID=2044307 RepID=A0A2B8AS87_9ACTN)

HSP 1 Score: 52.8 bits (125), Expect = 4.680e-5
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 1
Query:   25 IAATADPVFEANRTALIVDLVPEDDY----PSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGS-----KPKLSHAYRFLANDRV 339
            + A   PVF   R A + D++ E D      S I++   ++QAAQLAGFA+GGLL A L   GAL +  VTFL SALLL ++ TR    R G      +  LS     LA+ R+
Sbjct:  120 LTALVAPVFTGTRAASLGDILGEGDLFVLGRSLIRI---VSQAAQLAGFAAGGLLIAALSPRGALGVTVVTFLGSALLL-RLGTRRRPARGGGAGPVLRSSLSGTGALLADRRI 229          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A7R7HY04_9ACTN (MFS transporter n=2 Tax=Actinocatenispora thailandica TaxID=227318 RepID=A0A7R7HY04_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 6.390e-5
Identity = 58/157 (36.94%), Postives = 76/157 (48.41%), Query Frame = 1
Query:   28 AATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSKPKLSHAYRFL----ANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVPAATL 486
            +AT  P+F A R A I ++VP      A  +   + QAAQLAGFA GGLL  L+    AL      F+ SALLL +I TR    R G+   L  + R L       R+  + +A  +V    A+A E+ A  Y   I      G GLL   VPA T+
Sbjct:  135 SATVTPIFGAARAASIPEIVPGPAAVLARSLIRVVTQAAQLAGFAVGGLLLVLVSPRFALVGEAAGFVVSALLL-RIGTRWRPARGGAGSMLGDSVRGLRAVFGAPRIRAL-LALWWVPPVFAVAPEALAAPYAHGI-GQGPVGLGLLMTAVPAGTV 288          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A5P9PEV3_9PSEU (Enterobactin exporter EntS n=2 Tax=Amycolatopsis sp. YIM 10 TaxID=2653857 RepID=A0A5P9PEV3_9PSEU)

HSP 1 Score: 52.4 bits (124), Expect = 6.480e-5
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   13 IVVTIAATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLS---QIRTRTETQRSGSKP 297
            ++  + A+A P F+A + ALI  ++  D Y + +       Q  Q+AGF +GG+L ALLG SG LA+N VTF  SALL+    + R    +Q +G +P
Sbjct:  111 LIAVLTASAAP-FKAAQLALIPTMLSADLYQAGLAARQMSVQVVQVAGFGAGGVLVALLGPSGVLAVNAVTFTLSALLIVIGVRSRPAARSQDAGGQP 207          
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Match: A0A1C6QCZ1_9ACTN (Transmembrane secretion effector n=8 Tax=Streptomyces TaxID=1883 RepID=A0A1C6QCZ1_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 6.490e-5
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = 1
Query:    7 LVIVVTIAATADPVFEANRTALIVDLVPEDD-YPSAIQVAGAINQAAQLAGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSK---------PKLSHAYRFLANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGTGLLAAVVP 474
            L+++  + A   PVF   R A + +++ E + +     V   +NQ+AQLAGFA+GGLL  ++     LAL    FL SALLL ++ T     R G++           L    R LA+ RV  + +  T++  A  +  E+  V Y G ++ +  AGTGLL   +P
Sbjct:  135 LLVLRCVLAAIAPVFAGTRAATLGEILGEGELFVLGRSVIRIVNQSAQLAGFAAGGLLLVVVSPGAVLALTAGAFLGSALLL-RLGTLARPARDGARGAERGALLAASLGGIRRLLADRRVRALLL-LTWLPPAFVVIPEALLVAYAG-LLGVGPAGTGLLMCAMP 297          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105058.1085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A7Y2II31_9ACTN4.170e-2242.31MFS transporter n=1 Tax=Acidimicrobiales bacterium... [more]
A0A3N5KCK1_9ACTN8.330e-833.82MFS transporter (Fragment) n=1 Tax=Actinomycetia b... [more]
A0A7G8WG87_9ACTN6.460e-747.76MFS transporter n=1 Tax=Nakamurella sp. PAMC28650 ... [more]
A0A3A3YTL6_9ACTN6.530e-748.15MFS transporter n=2 Tax=Vallicoccus soli TaxID=233... [more]
A0A640UR74_9ACTN8.930e-735.67MFS transporter n=1 Tax=Streptomyces tubercidicus ... [more]
UPI001FE9BFBF1.480e-635.71MFS transporter n=1 Tax=Kribbella qitaiheensis Tax... [more]
A0A2B8AS87_9ACTN4.680e-541.23MFS transporter n=1 Tax=Streptomyces sp. Ru87 TaxI... [more]
A0A7R7HY04_9ACTN6.390e-536.94MFS transporter n=2 Tax=Actinocatenispora thailand... [more]
A0A5P9PEV3_9PSEU6.480e-538.78Enterobactin exporter EntS n=2 Tax=Amycolatopsis s... [more]
A0A1C6QCZ1_9ACTN6.490e-532.53Transmembrane secretion effector n=8 Tax=Streptomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105058contigM-pyrifera_M_contig105058:48..533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score63.2
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog1306174.JODP01000006_gene3087
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Major facilitator Superfamily
EggNOG OGs2HCHA@201174,COG0477@1,COG2814@2
COG Functional cat.EGP
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.5741622-CDS-M-pyrifera_M_contig105058:47..5331622815558.5741622-CDS-M-pyrifera_M_contig105058:47..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105058 48..533 +
1692277463.3730474-CDS-M-pyrifera_M_contig105058:47..5331692277463.3730474-CDS-M-pyrifera_M_contig105058:47..533Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105058 48..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105058.1085.1prot_M-pyrifera_M_contig105058.1085.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105058 48..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105058.1085.1

>prot_M-pyrifera_M_contig105058.1085.1 ID=prot_M-pyrifera_M_contig105058.1085.1|Name=mRNA_M-pyrifera_M_contig105058.1085.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=162bp
LPLVIVVTIAATADPVFEANRTALIVDLVPEDDYPSAIQVAGAINQAAQL
AGFASGGLLAALLGASGALALNGVTFLFSALLLSQIRTRTETQRSGSKPK
LSHAYRFLANDRVSMIAVATTFVTVACAMAIESQAVVYGGDIVDLSDAGT
GLLAAVVPAATL
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mRNA from alignment at M-pyrifera_M_contig105058:48..533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105058.1085.1 ID=mRNA_M-pyrifera_M_contig105058.1085.1|Name=mRNA_M-pyrifera_M_contig105058.1085.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=486bp|location=Sequence derived from alignment at M-pyrifera_M_contig105058:48..533+ (Macrocystis pyrifera P11B4 male)
CTGCCCCTGGTGATCGTGGTGACCATCGCCGCCACCGCCGACCCGGTCTT CGAGGCCAACCGGACGGCACTCATCGTCGACCTGGTGCCCGAAGACGACT ATCCGTCAGCCATCCAGGTCGCCGGTGCCATCAACCAGGCCGCCCAACTC GCCGGCTTCGCCTCCGGCGGCCTGCTCGCTGCACTTCTGGGGGCCTCCGG CGCCCTCGCACTCAACGGCGTGACGTTCCTCTTCTCCGCCCTGCTCCTGT CACAGATCCGAACACGGACCGAAACCCAGCGGTCGGGTTCGAAGCCGAAA CTGAGCCACGCCTACCGCTTCCTGGCCAACGATCGCGTCTCGATGATCGC AGTCGCCACGACCTTCGTGACGGTGGCATGCGCCATGGCGATCGAGAGCC AGGCGGTCGTCTACGGCGGCGACATCGTCGACCTCAGTGACGCCGGCACC GGCCTCCTGGCTGCGGTCGTGCCTGCGGCGACACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105058:48..533+

>mRNA_M-pyrifera_M_contig105058.1085.1 ID=mRNA_M-pyrifera_M_contig105058.1085.1|Name=mRNA_M-pyrifera_M_contig105058.1085.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=972bp|location=Sequence derived from alignment at M-pyrifera_M_contig105058:48..533+ (Macrocystis pyrifera P11B4 male)
CTGCCCCTGGTGATCGTGGTGACCATCGCCGCCACCGCCGACCCGGTCTT
CGAGGCCAACCGGACGGCACTCATCGTCGACCTGGTGCCCGAAGACGACT
ATCCGTCAGCCATCCAGGTCGCCGGTGCCATCAACCAGGCCGCCCAACTC
GCCGGCTTCGCCTCCGGCGGCCTGCTCGCTGCACTTCTGGGGGCCTCCGG
CGCCCTCGCACTCAACGGCGTGACGTTCCTCTTCTCCGCCCTGCTCCTGT
CACAGATCCGAACACGGACCGAAACCCAGCGGTCGGGTTCGAAGCCGAAA
CTGAGCCACGCCTACCGCTTCCTGGCCAACGATCGCGTCTCGATGATCGC
AGTCGCCACGACCTTCGTGACGGTGGCATGCGCCATGGCGATCGAGAGCC
AGGCGGTCGTCTACGGCGGCGACATCGTCGACCTCAGTGACGCCGGCACC
GGCCTCCTGGCTGCGGTCGTGCCTGCGGCGACACTGCTGCCCCTGGTGAT
CGTGGTGACCATCGCCGCCACCGCCGACCCGGTCTTCGAGGCCAACCGGA
CGGCACTCATCGTCGACCTGGTGCCCGAAGACGACTATCCGTCAGCCATC
CAGGTCGCCGGTGCCATCAACCAGGCCGCCCAACTCGCCGGCTTCGCCTC
CGGCGGCCTGCTCGCTGCACTTCTGGGGGCCTCCGGCGCCCTCGCACTCA
ACGGCGTGACGTTCCTCTTCTCCGCCCTGCTCCTGTCACAGATCCGAACA
CGGACCGAAACCCAGCGGTCGGGTTCGAAGCCGAAACTGAGCCACGCCTA
CCGCTTCCTGGCCAACGATCGCGTCTCGATGATCGCAGTCGCCACGACCT
TCGTGACGGTGGCATGCGCCATGGCGATCGAGAGCCAGGCGGTCGTCTAC
GGCGGCGACATCGTCGACCTCAGTGACGCCGGCACCGGCCTCCTGGCTGC
GGTCGTGCCTGCGGCGACACTG
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