mRNA_M-pyrifera_M_contig10503.1084.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10503.1084.1
Unique NamemRNA_M-pyrifera_M_contig10503.1084.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10503.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10503contigM-pyrifera_M_contig10503:6213..6770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size558
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10503.1084.1prot_M-pyrifera_M_contig10503.1084.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10503 6260..6559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.5171971-UTR-M-pyrifera_M_contig10503:6212..62591622815558.5171971-UTR-M-pyrifera_M_contig10503:6212..6259Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10503 6213..6259 +
1692277463.3368347-UTR-M-pyrifera_M_contig10503:6212..62591692277463.3368347-UTR-M-pyrifera_M_contig10503:6212..6259Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10503 6213..6259 +
1622815558.5369627-UTR-M-pyrifera_M_contig10503:6559..67701622815558.5369627-UTR-M-pyrifera_M_contig10503:6559..6770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10503 6560..6770 +
1692277463.3605545-UTR-M-pyrifera_M_contig10503:6559..67701692277463.3605545-UTR-M-pyrifera_M_contig10503:6559..6770Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10503 6560..6770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.5270562-CDS-M-pyrifera_M_contig10503:6259..65591622815558.5270562-CDS-M-pyrifera_M_contig10503:6259..6559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10503 6260..6559 +
1692277463.3488529-CDS-M-pyrifera_M_contig10503:6259..65591692277463.3488529-CDS-M-pyrifera_M_contig10503:6259..6559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10503 6260..6559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10503.1084.1

>prot_M-pyrifera_M_contig10503.1084.1 ID=prot_M-pyrifera_M_contig10503.1084.1|Name=mRNA_M-pyrifera_M_contig10503.1084.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
MRWRLLLVSVALLRWQYLVASASEPKLAFRLGNVLPGTTLSTTIRARRGC
THVMHGRNRMAVDPGIPKRPGRSTSGFRGPGRHFLGPSAKRREVFDESH*
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mRNA from alignment at M-pyrifera_M_contig10503:6213..6770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10503.1084.1 ID=mRNA_M-pyrifera_M_contig10503.1084.1|Name=mRNA_M-pyrifera_M_contig10503.1084.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig10503:6213..6770+ (Macrocystis pyrifera P11B4 male)
GCGAGACTCGTTTCTCTTGTCGTACGTAACGTAGTGACGAGCTGCGAATG
CGTTGGAGACTCTTGCTTGTTAGTGTTGCGCTTCTGCGCTGGCAGTATCT
TGTTGCTAGTGCAAGCGAACCGAAACTTGCTTTCCGTCTCGGAAACGTAT
TGCCTGGTACGACGTTATCGACGACTATCAGGGCAAGGCGGGGGTGTACT
CATGTCATGCATGGCCGTAATCGTATGGCCGTAGACCCTGGCATCCCTAA
AAGGCCAGGACGGAGCACGTCGGGTTTTCGCGGACCAGGCAGGCATTTTC
TTGGCCCAAGCGCGAAGCGCCGTGAGGTGTTCGACGAGTCGCATTAAGGG
TAAGCTGCATCCTACCAAGAATCGCTTGTGAGGCGGTCTTTCTGGCATAT
GGATGGCAGCGTCGAATTAGTGGAGGGGAAAGGCTCTGTTGTTGTCTTGC
GAGTTTCGTCTAAACGTAGCCGTTTCGGGTGGGAGAAAAGAGAATGCTCG
GAAAAAGGCCTATTTTATACTGGTATTATGTGCACCTCTCCTGCTGGTAT
ATTCCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10503:6213..6770+

>mRNA_M-pyrifera_M_contig10503.1084.1 ID=mRNA_M-pyrifera_M_contig10503.1084.1|Name=mRNA_M-pyrifera_M_contig10503.1084.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig10503:6213..6770+ (Macrocystis pyrifera P11B4 male)
ATGCGTTGGAGACTCTTGCTTGTTAGTGTTGCGCTTCTGCGCTGGCAGTA
TCTTGTTGCTAGTGCAAGCGAACCGAAACTTGCTTTCCGTCTCGGAAACG
TATTGCCTGGTACGACGTTATCGACGACTATCAGGGCAAGGCGGGGGTGT
ACTCATGTCATGCATGGCCGTAATCGTATGGCCGTAGACCCTGGCATCCC
TAAAAGGCCAGGACGGAGCACGTCGGGTTTTCGCGGACCAGGCAGGCATT
TTCTTGGCCCAAGCGCGAAGCGCCGTGAGGTGTTCGACGAGTCGCATTAA
ATGCGTTGGAGACTCTTGCTTGTTAGTGTTGCGCTTCTGCGCTGGCAGTA
TCTTGTTGCTAGTGCAAGCGAACCGAAACTTGCTTTCCGTCTCGGAAACG
TATTGCCTGGTACGACGTTATCGACGACTATCAGGGCAAGGCGGGGGTGT
ACTCATGTCATGCATGGCCGTAATCGTATGGCCGTAGACCCTGGCATCCC
TAAAAGGCCAGGACGGAGCACGTCGGGTTTTCGCGGACCAGGCAGGCATT
TTCTTGGCCCAAGCGCGAAGCGCCGTGAGGTGTTCGACGAGTCGCATTAA
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