mRNA_M-pyrifera_M_contig105025.1082.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105025.1082.1
Unique NamemRNA_M-pyrifera_M_contig105025.1082.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig105025.1082.1 vs. uniprot
Match: A0A6H5JPB8_9PHAE (CCHC-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.010e-7
Identity = 30/111 (27.03%), Postives = 57/111 (51.35%), Query Frame = 1 
Query:    1 RQAWDALLAWYDPQTTGAKSDLSRRLNSFKMAPGSNPLEEMGRIQDLAAEMRTAGMSVDDHMLYTIFIDALPVEYEVEARNLASRDSIGRDDIIKAVREQHHRLSGNRKKR 333
            +QA D L   ++P++  A  +L  +  +F M    NP E +  ++ LA+ +   G+ V+   + ++F+ ALP EY+     L S  ++ R ++I+ V  QH  +   +  R
Sbjct:  231 KQALDELDKVHNPESQVATQELLSKFQNFAMPADKNPTESLIAMEQLASRLNERGVRVEASYVLSLFLSALPAEYDHAKLTLQSAPTLDRGEVIRVVGSQHSSIKQGKSHR 341
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105025.1082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPB8_9PHAE1.010e-727.03CCHC-type domain-containing protein n=7 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105025contigM-pyrifera_M_contig105025:94..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.4442763-CDS-M-pyrifera_M_contig105025:93..4771622815558.4442763-CDS-M-pyrifera_M_contig105025:93..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105025 94..477 +
1692277463.308831-CDS-M-pyrifera_M_contig105025:93..4771692277463.308831-CDS-M-pyrifera_M_contig105025:93..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105025 94..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105025.1082.1prot_M-pyrifera_M_contig105025.1082.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105025 94..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105025.1082.1

>prot_M-pyrifera_M_contig105025.1082.1 ID=prot_M-pyrifera_M_contig105025.1082.1|Name=mRNA_M-pyrifera_M_contig105025.1082.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
RQAWDALLAWYDPQTTGAKSDLSRRLNSFKMAPGSNPLEEMGRIQDLAAE
MRTAGMSVDDHMLYTIFIDALPVEYEVEARNLASRDSIGRDDIIKAVREQ
HHRLSGNRKKRLQRGRWWLGRGCWWQW*
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mRNA from alignment at M-pyrifera_M_contig105025:94..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105025.1082.1 ID=mRNA_M-pyrifera_M_contig105025.1082.1|Name=mRNA_M-pyrifera_M_contig105025.1082.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig105025:94..477+ (Macrocystis pyrifera P11B4 male)
AGGCAAGCGTGGGACGCTCTCCTTGCGTGGTACGACCCTCAGACGACGGG
GGCCAAATCAGACCTCTCCCGACGGCTTAACAGTTTTAAGATGGCGCCGG
GGAGCAACCCGCTCGAGGAGATGGGCAGGATCCAGGATCTTGCCGCGGAA
ATGCGAACAGCAGGAATGTCAGTAGACGACCACATGCTGTACACCATATT
TATTGACGCTCTGCCTGTCGAATACGAAGTGGAGGCTCGGAACCTGGCAT
CACGTGACAGCATCGGCCGTGATGACATCATCAAGGCTGTTCGAGAACAG
CATCACCGACTTTCTGGAAACAGGAAGAAGAGGCTCCAACGAGGACGGTG
GTGGCTCGGCCGCGGCTGCTGGTGGCAATGGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105025:94..477+

>mRNA_M-pyrifera_M_contig105025.1082.1 ID=mRNA_M-pyrifera_M_contig105025.1082.1|Name=mRNA_M-pyrifera_M_contig105025.1082.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig105025:94..477+ (Macrocystis pyrifera P11B4 male)
AGGCAAGCGTGGGACGCTCTCCTTGCGTGGTACGACCCTCAGACGACGGG
GGCCAAATCAGACCTCTCCCGACGGCTTAACAGTTTTAAGATGGCGCCGG
GGAGCAACCCGCTCGAGGAGATGGGCAGGATCCAGGATCTTGCCGCGGAA
ATGCGAACAGCAGGAATGTCAGTAGACGACCACATGCTGTACACCATATT
TATTGACGCTCTGCCTGTCGAATACGAAGTGGAGGCTCGGAACCTGGCAT
CACGTGACAGCATCGGCCGTGATGACATCATCAAGGCTGTTCGAGAACAG
CATCACCGACTTTCTGGAAACAGGAAGAAGAGGCTCCAACGAGGACGGTG
GTGGCTCGGCCGCGGCTGCTGGTGGCAATGGTAAAGGCAAGCGTGGGACG
CTCTCCTTGCGTGGTACGACCCTCAGACGACGGGGGCCAAATCAGACCTC
TCCCGACGGCTTAACAGTTTTAAGATGGCGCCGGGGAGCAACCCGCTCGA
GGAGATGGGCAGGATCCAGGATCTTGCCGCGGAAATGCGAACAGCAGGAA
TGTCAGTAGACGACCACATGCTGTACACCATATTTATTGACGCTCTGCCT
GTCGAATACGAAGTGGAGGCTCGGAACCTGGCATCACGTGACAGCATCGG
CCGTGATGACATCATCAAGGCTGTTCGAGAACAGCATCACCGACTTTCTG
GAAACAGGAAGAAGAGGCTCCAACGAGGACGGTGGTGGCTCGGCCGCGGC
TGCTGGTGGCAATGGTAA
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