mRNA_M-pyrifera_M_contig1050.1081.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1050.1081.1
Unique NamemRNA_M-pyrifera_M_contig1050.1081.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: D7FL27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL27_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 9.820e-36
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREG 222
            + GLHSHWI+DSII MQRPSS LIK YDI+ QFKRKGVTAIFNLTE GEHP+CGD LE++SGFPYLP+TFMREG
Sbjct:  233 VNGLHSHWISDSIIGMQRPSSRLIKTYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKASGFPYLPETFMREG 306          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A7S3GGD6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GGD6_9EUKA)

HSP 1 Score: 99.8 bits (247), Expect = 7.590e-25
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFM 213
            I GLHS W T+ IIA QRPSS LIK+Y++ID FK+ G+ A+ NL E GEHP+CGD +  SSGF Y P  FM
Sbjct:   39 IPGLHSSWATEDIIACQRPSSRLIKEYELIDSFKKAGIGAVVNLQERGEHPHCGDGIHRSSGFSYFPAEFM 109          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A1Y1XPW3_9FUNG (Uncharacterized protein n=1 Tax=Anaeromyces robustus TaxID=1754192 RepID=A0A1Y1XPW3_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 7.870e-25
Identity = 42/75 (56.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREGS 225
            I+GL+S+WI  +I+A QRPS+ +IKKY++I++FK+  + +I NL E GEHP CGD +E SSGF Y P+ FM EGS
Sbjct:   32 IEGLYSNWIGGNILATQRPSTKIIKKYNLINEFKKNNILSIINLEEFGEHPNCGDGIELSSGFAYKPEDFMNEGS 106          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A6A4RNQ0_SCOMX (Uncharacterized protein n=1 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A6A4RNQ0_SCOMX)

HSP 1 Score: 97.8 bits (242), Expect = 1.270e-23
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREGSE 228
            IKGL+S WITD+++AM RPS+ +I+KY+II QF+R G+  + NL   GEH  CG+ LE+ SGF Y P+TFM  G E
Sbjct:  137 IKGLYSSWITDNLLAMARPSTEIIEKYNIIQQFQRCGLKTVINLQRPGEHASCGNPLEQESGFTYRPETFMEAGGE 212          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A1Y1VFR9_9FUNG (Phosphatases II n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VFR9_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 2.600e-23
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMRE 219
            I GL S+WI  +I+A QRPS+ LIKKYD+I++FK+  + +I NL E GEHP CGD +E SSGF Y P+ FM E
Sbjct:   32 ITGLFSNWIGGNILATQRPSTRLIKKYDLINEFKKNNILSIINLEEFGEHPNCGDGIESSSGFAYKPEDFMNE 104          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A078AY45_STYLE (Protein tyrosine phosphatase domain-containing protein 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078AY45_STYLE)

HSP 1 Score: 101 bits (251), Expect = 2.870e-23
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREG 222
            I+GLHS+WI D++IA QR S  LI +++II QFK KGVTA+FNL E GEHPYCGD +   SGF Y P+  M  G
Sbjct:   98 IQGLHSNWINDNVIASQRLSDRLIHQFEIIKQFKEKGVTAVFNLQEPGEHPYCGDGINVKSGFSYHPELLMNSG 171          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A4W3IET9_CALMI (Uncharacterized protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IET9_CALMI)

HSP 1 Score: 100 bits (250), Expect = 4.130e-23
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREGS 225
            +KGL+S WITD+I+ M RPSS +I+KY+II+QFKR GV  + NL   GEH  CG+ LE+ SGF YLP+ FM  G+
Sbjct:   49 VKGLYSSWITDNILGMARPSSEIIEKYNIIEQFKRHGVKTVINLQRPGEHASCGNPLEQESGFTYLPEVFMEAGN 123          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A091HGS4_CALAN (Protein tyrosine phosphatase domain-containing protein 1 (Fragment) n=2 Tax=Calypte anna TaxID=9244 RepID=A0A091HGS4_CALAN)

HSP 1 Score: 100 bits (250), Expect = 4.140e-23
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREG 222
            IKGL+S WITD+I+AM RPS+ LI+KY+II+QF+R G+  I NL   GEH  CG+ LE+ SGF YLP+ FM  G
Sbjct:  122 IKGLYSSWITDNILAMARPSTELIEKYNIIEQFERSGIKTIINLQRPGEHASCGNPLEQESGFSYLPEAFMEAG 195          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: A0A1Y3N242_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N242_PIRSE)

HSP 1 Score: 97.1 bits (240), Expect = 4.780e-23
Identity = 42/75 (56.00%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREGS 225
            IKGL S+WI  +I+A QRPS+ +IK+Y++I++FK+  V +I NL E GEHP CGD +E SSGF Y P+ FM EG+
Sbjct:   32 IKGLFSNWIGGNILATQRPSTKIIKEYNLINEFKKYNVLSIINLEEFGEHPNCGDGIEPSSGFAYKPEDFMNEGN 106          
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Match: UPI001176CB93 (protein tyrosine phosphatase domain-containing protein 1 isoform X6 n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=UPI001176CB93)

HSP 1 Score: 99.8 bits (247), Expect = 4.890e-23
Identity = 44/74 (59.46%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    1 IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEHPYCGDNLEESSGFPYLPDTFMREG 222
            IKGL+S WITD+I+AM RPS+ LI+KY+II+QF+R G+  I NL   GEH  CG+ LE+ SGF YLP+ FM  G
Sbjct:   96 IKGLYSSWITDNILAMARPSTELIEKYNIIEQFERCGIKTIINLQRPGEHASCGNPLEQESGFTYLPEAFMEAG 169          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1050.1081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL27_ECTSI9.820e-3681.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3GGD6_9EUKA7.590e-2560.56Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A1Y1XPW3_9FUNG7.870e-2556.00Uncharacterized protein n=1 Tax=Anaeromyces robust... [more]
A0A6A4RNQ0_SCOMX1.270e-2355.26Uncharacterized protein n=1 Tax=Scophthalmus maxim... [more]
A0A1Y1VFR9_9FUNG2.600e-2357.53Phosphatases II n=1 Tax=Piromyces finnis TaxID=175... [more]
A0A078AY45_STYLE2.870e-2359.46Protein tyrosine phosphatase domain-containing pro... [more]
A0A4W3IET9_CALMI4.130e-2357.33Uncharacterized protein n=2 Tax=Callorhinchus mili... [more]
A0A091HGS4_CALAN4.140e-2359.46Protein tyrosine phosphatase domain-containing pro... [more]
A0A1Y3N242_PIRSE4.780e-2356.00Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
UPI001176CB934.890e-2359.46protein tyrosine phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1050contigM-pyrifera_M_contig1050:4517..5270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.5e-30
Seed eggNOG ortholog2880.D7FL27
Preferred namePTPDC1
KEGG koko:K18078
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0120031,GO:0120036,GO:0140096,GO:1901564
EggNOG free text desc.protein tyrosine/serine/threonine phosphatase activity
EggNOG OGsCOG2453@1,KOG1720@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.394784-CDS-M-pyrifera_M_contig1050:4516..46201622815558.394784-CDS-M-pyrifera_M_contig1050:4516..4620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1050 4517..4620 +
1692277463.2817311-CDS-M-pyrifera_M_contig1050:4516..46201692277463.2817311-CDS-M-pyrifera_M_contig1050:4516..4620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1050 4517..4620 +
1622815558.4109037-CDS-M-pyrifera_M_contig1050:5143..52701622815558.4109037-CDS-M-pyrifera_M_contig1050:5143..5270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1050 5144..5270 +
1692277463.2966168-CDS-M-pyrifera_M_contig1050:5143..52701692277463.2966168-CDS-M-pyrifera_M_contig1050:5143..5270Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1050 5144..5270 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1050.1081.1prot_M-pyrifera_M_contig1050.1081.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1050 4517..5270 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1050.1081.1

>prot_M-pyrifera_M_contig1050.1081.1 ID=prot_M-pyrifera_M_contig1050.1081.1|Name=mRNA_M-pyrifera_M_contig1050.1081.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
IKGLHSHWITDSIIAMQRPSSSLIKKYDIIDQFKRKGVTAIFNLTEAGEH
PYCGDNLEESSGFPYLPDTFMREGSE*
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mRNA from alignment at M-pyrifera_M_contig1050:4517..5270+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1050.1081.1 ID=mRNA_M-pyrifera_M_contig1050.1081.1|Name=mRNA_M-pyrifera_M_contig1050.1081.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=754bp|location=Sequence derived from alignment at M-pyrifera_M_contig1050:4517..5270+ (Macrocystis pyrifera P11B4 male)
ATCAAGGGGCTTCATTCGCACTGGATAACGGATTCCATAATTGCCATGCA GAGGCCCAGCAGCAGTCTCATCAAGAAGTACGACATCATCGACCAGTTTA AGCGGTGAGCACATCTTCGAGACGCTGGGGAACCATTGCATTCGTACTAC TACTATGCTCTGTTGGCCATCCGACAATATGCAGGGTAAGCTTCAGCATT GGCCGCTCAAAAACAATCTCAAATACAGTAGAAAAAATAGTGCAAGGGAA ACAAAAAAATAGTACACATGTCGTGCGCGGAGTATATTTGCCACCATGCA TGGATACCTAAAGCTCAGCCAAACTCAACGAAAGGTTTAAGCTTCTTGTC CGGTTGTTACCCGCTTGCTCACTTGTTTAGGGTTGGCCGTGATCTTCAAC CTCGCCGACGCCGCAACACGTCACTGAAGTAATCACGATAACTCCACAAC AGGCTGCAACACTTCAATCAAGTAACTTAGGGTTAGTAACGAGCGCTTAA CCCCTTTTCAAGTGCAACTAGCAGTGAACACGCTTTTGTGCTCGATCTAC TTGGAATTTGCGTGGCATGCTTTTTGCAGCACTTGTAAGGGATACGCCAT TCGTCCAATTGTCCAATTGCCTACCAGGAAGGGGGTGACGGCAATCTTCA ACCTTACCGAGGCCGGGGAGCATCCTTACTGCGGCGACAACTTGGAGGAG AGCAGCGGCTTTCCGTACCTCCCGGATACTTTTATGCGAGAAGGGAGTGA GTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1050:4517..5270+

>mRNA_M-pyrifera_M_contig1050.1081.1 ID=mRNA_M-pyrifera_M_contig1050.1081.1|Name=mRNA_M-pyrifera_M_contig1050.1081.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig1050:4517..5270+ (Macrocystis pyrifera P11B4 male)
ATCAAGGGGCTTCATTCGCACTGGATAACGGATTCCATAATTGCCATGCA
GAGGCCCAGCAGCAGTCTCATCAAGAAGTACGACATCATCGACCAGTTTA
AGCGATCAAGGGGCTTCATTCGCACTGGATAACGGATTCCATAATTGCCA
TGCAGAGGCCCAGCAGCAGTCTCATCAAGAAGTACGACATCATCGACCAG
TTTAAGCGGAAGGGGGTGACGGCAATCTTCAACCTTACCGAGGCCGGGGA
GCATCCTTACTGCGGCGACAACTTGGAGGAGAGCAGCGGCTTTCCGTACC
TCCCGGATACTTTTATGCGAGAAGGGAGTGAGTAGGAAGGGGGTGACGGC
AATCTTCAACCTTACCGAGGCCGGGGAGCATCCTTACTGCGGCGACAACT
TGGAGGAGAGCAGCGGCTTTCCGTACCTCCCGGATACTTTTATGCGAGAA
GGGAGTGAGTAG
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