mRNA_M-pyrifera_M_contig105.1080.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig105.1080.1
Unique NamemRNA_M-pyrifera_M_contig105.1080.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.730e-15
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 1
Query:  259 LLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAADGSGYTALYHAAGAGMTGVAE 561
            LLLR GA  DV+D +GR+P++ +A RG L+ ++ALLAAG D++LR G     + L +AA  G+++++  L+RHGVDV+A D +G TAL+ AA     G  E
Sbjct:  100 LLLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFSALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIE 200          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A2V8DR59_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8DR59_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 6.470e-12
Identity = 72/199 (36.18%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   49 RTLTEHGVNPNDAGS-DGKTALYKAVYHGRADPATIQLLLSVGADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDV-------------VDGQGRSPVYFAAMRGHLATLRALLAAGADA--TLRSGTLLISAPLDIAAYCGN--------------IDIVVELVRHGVDVNAADGSGYTALYHAAGAGMTGV 555
            R L + GV+ ND  S D KTAL  A   G    A    LL  GA+ D S   G T LH+AA+    +D    LL +GA+ ++             V+  G +P++ AA RGH+ T+RAL+A GAD   T  +GT    APL +A + G+               DI   LV  G +VN+    G+TAL+ AA  G+ GV
Sbjct:  206 RLLLQAGVDVNDRSSTDRKTALMVAAASGNR--AFSVFLLEKGANPDLSDDGGFTALHYAASDKDGADIVRALLMHGAHPNLRTTRDSREYVYAGVNLTGATPLFLAASRGHVETVRALVAGGADPFITTDNGT----APLHVATWGGSPYFRDWTEDEKKNLFDITKLLVELGSNVNSVGEHGWTALHGAAYKGVDGV 398          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A2U1L9Z0_ARTAN (Ankyrin repeat family protein n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1L9Z0_ARTAN)

HSP 1 Score: 73.6 bits (179), Expect = 2.130e-11
Identity = 57/169 (33.73%), Postives = 86/169 (50.89%), Query Frame = 1
Query:   61 EHGVNPNDAGSDGKTALYKAVYHGRADPATIQLLLSVGADIDA-STSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAADGS-GYTALYHAAGAGMTGVAE 561
            EHG NP  +   G TAL+     G  +   ++LLLSVG D+D  S S+ GT L WAA  ++  +   LLL++ A+ ++    G +P+      G L  L  L+ AGA+  + +G    + PL +AA  GN +++  L++   D N  D   G T +  AAG G     E
Sbjct:  110 EHGANPALSSELGATALHHVAGIGHIE--LMELLLSVGVDVDVDSQSDSGTPLVWAAGHAQ-QEAVKLLLKHKADPNIETDDGVTPLLSTVAAGSLPCLELLIEAGANVNITAGG---ATPLHVAADIGNTELITRLIKAKADPNVTDEEEGLTPVQMAAGRGNKAAVE 272          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 4.260e-10
Identity = 54/148 (36.49%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  100 KTALYKAVYHGRADPATIQLLLSVG--ADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLIS-APLDIAAYCGNIDIVVELVRHGVDVNAADGSGYTALYHAA 534
            + AL +AV  G  D + ++ +L V   A +  ++ +    LH AA+  +     A LL  GA K+ +D QGR+P++ A   GHL+T++ALLAA  D ++R      S + LD+AA  G+  ++  +++HGVDVN     GYT+L+ AA
Sbjct:    2 RVALEEAVDSGHVDESAVEPILVVAKVASLQYASVDSSDQLHVAASQGQ-EGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKGDACVLRAILQHGVDVNRRT-DGYTSLHVAA 147          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 8.980e-8
Identity = 49/121 (40.50%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  202 GGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAADGSGYTALYHAAGAGMTGVAEA 564
            G T LH AA      D   L+L+ GA  D +D Q R                   AAGAD +LRSG    SA L+ AA  G++D+V  +VRHGVDVNA D  G TAL+  A +   G  +A
Sbjct:    2 GHTPLHLAA-GLGCDDMMPLILQQGAVVDALDNQRRXXXXXXXXXXXXXXXXXXXAAGADLSLRSGDNNESA-LETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAIDA 120          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.340e-7
Identity = 65/193 (33.68%), Postives = 100/193 (51.81%), Query Frame = 1
Query:    4 SVLDAATLMRHADIIRTLTEHGVNPND---AGSDGKTALYKAVYHGRADPATIQLLLSVGADIDA--STSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVD----GQGRSPVYFAAMRG------------------HLATLRALLAAGADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAAD 501
            S+LDAA L  +A ++  L + G  P+    A S G++ALY++V  G+ + A  +L+L+ GAD++      + G L  +AA  +   D    LL  GAN +V+     G G +P++ AA +G                  H+AT++ LLAAGAD  +R   L   + L  AA    ID++  L+ HGVDVN  +
Sbjct:   69 SLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVL-GKHEAAARKLILA-GADVNFVDRADKAGPL--FAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHG-TPLHAAAKQGLANTASVLLSSPSTDKNGHVATVKVLLAAGADTDIRD--LDSHSALVFAAQYERIDVMKALLEHGVDVNVGE 254          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A6P4YJJ0_BRABE (ankyrin repeat domain-containing protein 17-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YJJ0_BRABE)

HSP 1 Score: 62.0 bits (149), Expect = 1.970e-7
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:   19 ATLMRHADIIRTLTEHGVNPNDAGSDGKTALYKAVYHGRADPATIQLLLSVGADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLISAPLDIAAY 438
            +T   +  I+  L  +G +PN +  DG + L+ A   GR    T++ L+  GA+  A  S+G + LH+AA +S T     L L    NK   D  G + ++ AA RG+LAT++ALL AGAD  + +    +S PLD+A +
Sbjct:  244 STKEENLPIVELLLAYGADPNQS-KDGSSLLHLATEQGRTK--TVEALVQAGANRAALDSDGHSPLHFAAANSNTELVKLLSLPQILNKP--DKDGLTALHLAADRGNLATVQALLEAGADIDVETPVTKVS-PLDMALH 377          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: A0A8H7QBP1_9FUNG (Glycerophosphocholine phosphodiesterase n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7QBP1_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 3.100e-7
Identity = 41/106 (38.68%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  253 TALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLA---AGADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAADGSGYTALYHAAGAGMTGVAE 561
            T LL+  GAN ++ D  G +P+YFAA  GH+  + ALL      AD  ++  T+    PL +AA  GN  +V +LV +G D+N  D  G+ A  HA   G T ++E
Sbjct:  574 TKLLIEVGANLEMKDEDGETPLYFAARNGHVDCIEALLKEPLTRADTNVQD-TVNGYTPLMVAAIEGNASVVEKLVAYGADINLVDFEGWNAHEHAIFRGFTTLSE 678          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: UPI000D737D4C (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D737D4C)

HSP 1 Score: 60.5 bits (145), Expect = 4.310e-7
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   40 DIIRTLTEHGVNPNDAGSDGKTALYKAVYHGRADPATIQLLLSVGADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAG---ADATLRSGTLLISAPLDIAAYCGNIDIVVELVRHGVDVNAADGSGYTALYHA 531
            + +  L E G +     S G T L  AV + R     + LL    + ++ +   G T LH+AA S+      A LL  GA  +VVDG+G +P+  AA  G    ++AL A+G    +  L S        L I A+ G+ D + +L+  G DV AAD  G TA++ A
Sbjct:  114 ECLHVLVECGADLRARDSAGCTPLILAVRYKRYGVMKV-LLEHSSSSLNMADHSGRTALHYAAQSATG---VAQLLAAGAEVNVVDGEGLTPLLIAAAEGLSGVVKALAASGRCDVNVALPSSR---RTALHILAHKGHSDCIAQLLAAGADVTAADAEGRTAMWFA 273          
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Match: UPI0003C1002A (ankyrin repeat domain-containing protein 10-like n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=UPI0003C1002A)

HSP 1 Score: 59.7 bits (143), Expect = 4.590e-7
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   97 GKTALYKAVYHGRADPATIQLLLSVGADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDGQGRSPVYFAAMRGHLATLRALLAAGADATLRS 396
            GKT LY A Y G+    +++LLL  GAD+++    GG+ LH A       +   LL++YGAN ++ D  G +P+Y AA  G +  ++ L+ AGA  T R+
Sbjct:   72 GKTPLYWAAYKGQRS--SMELLLRAGADVNSQCKHGGSPLHAAV--GLFPECALLLIQYGANVNLSDNWGVTPMYLAACSGQIECIQLLVRAGAKITYRN 167          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig105.1080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN15_9PHAE5.730e-1546.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V8DR59_9BACT6.470e-1236.18Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A2U1L9Z0_ARTAN2.130e-1133.73Ankyrin repeat family protein n=2 Tax=Artemisia an... [more]
D7G6X8_ECTSI4.260e-1036.49Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KSG6_9PHAE8.980e-840.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXA8_ECTSI1.340e-733.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6P4YJJ0_BRABE1.970e-735.71ankyrin repeat domain-containing protein 17-like n... [more]
A0A8H7QBP1_9FUNG3.100e-738.68Glycerophosphocholine phosphodiesterase n=1 Tax=Um... [more]
UPI000D737D4C4.310e-732.93serine/threonine-protein phosphatase 6 regulatory ... [more]
UPI0003C1002A4.590e-738.00ankyrin repeat domain-containing protein 10-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig105contigM-pyrifera_M_contig105:27684..28415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue4.3e-10
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size732
Cds size732
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.3602402-CDS-M-pyrifera_M_contig105:27683..284151622815558.3602402-CDS-M-pyrifera_M_contig105:27683..28415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105 27684..28415 -
1692277463.266549-CDS-M-pyrifera_M_contig105:27683..284151692277463.266549-CDS-M-pyrifera_M_contig105:27683..28415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig105 27684..28415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig105.1080.1prot_M-pyrifera_M_contig105.1080.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig105 27684..28415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig105.1080.1

>prot_M-pyrifera_M_contig105.1080.1 ID=prot_M-pyrifera_M_contig105.1080.1|Name=mRNA_M-pyrifera_M_contig105.1080.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=244bp
MSVLDAATLMRHADIIRTLTEHGVNPNDAGSDGKTALYKAVYHGRADPAT
IQLLLSVGADIDASTSEGGTLLHWAATSSKTSDTTALLLRYGANKDVVDG
QGRSPVYFAAMRGHLATLRALLAAGADATLRSGTLLISAPLDIAAYCGNI
DIVVELVRHGVDVNAADGSGYTALYHAAGAGMTGVAEALVHAGASLTAVT
FWGKTPLIAATSSLSIGVMRVLLQHGASVRGSQGKGLMMIGTEP
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mRNA from alignment at M-pyrifera_M_contig105:27684..28415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig105.1080.1 ID=mRNA_M-pyrifera_M_contig105.1080.1|Name=mRNA_M-pyrifera_M_contig105.1080.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=732bp|location=Sequence derived from alignment at M-pyrifera_M_contig105:27684..28415- (Macrocystis pyrifera P11B4 male)
ATGTCTGTTCTCGACGCTGCCACACTCATGCGCCACGCGGACATAATAAG AACCCTAACGGAGCACGGCGTGAACCCGAACGATGCCGGTAGTGATGGCA AAACGGCACTGTATAAAGCCGTGTATCACGGAAGGGCAGACCCCGCCACT ATCCAACTGCTCCTCTCTGTCGGAGCAGACATTGATGCGTCGACAAGTGA GGGCGGCACGCTCCTGCACTGGGCGGCCACCTCCTCGAAGACCAGCGACA CCACGGCCTTGCTCCTGCGTTACGGAGCAAACAAGGACGTGGTGGACGGC CAGGGCCGTTCGCCCGTGTACTTCGCGGCCATGCGCGGCCACCTCGCCAC TTTGCGCGCTCTGCTAGCGGCCGGCGCTGACGCCACCCTTCGGTCTGGCA CGCTCCTGATATCAGCGCCGCTCGATATCGCTGCCTACTGCGGCAATATC GACATTGTCGTAGAGCTCGTTCGGCACGGTGTGGACGTGAACGCCGCCGA CGGCAGCGGTTACACAGCTCTATATCATGCCGCGGGGGCTGGGATGACAG GTGTCGCCGAGGCGCTGGTCCACGCAGGCGCCAGCTTGACCGCAGTGACT TTCTGGGGCAAAACGCCGCTCATCGCTGCCACTAGTAGCCTCAGTATAGG CGTTATGCGTGTGCTCCTTCAGCACGGTGCCTCTGTTCGGGGGTCTCAGG GCAAGGGGCTCATGATGATAGGGACCGAGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig105:27684..28415-

>mRNA_M-pyrifera_M_contig105.1080.1 ID=mRNA_M-pyrifera_M_contig105.1080.1|Name=mRNA_M-pyrifera_M_contig105.1080.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1464bp|location=Sequence derived from alignment at M-pyrifera_M_contig105:27684..28415- (Macrocystis pyrifera P11B4 male)
ATGTCTGTTCTCGACGCTGCCACACTCATGCGCCACGCGGACATAATAAG
AACCCTAACGGAGCACGGCGTGAACCCGAACGATGCCGGTAGTGATGGCA
AAACGGCACTGTATAAAGCCGTGTATCACGGAAGGGCAGACCCCGCCACT
ATCCAACTGCTCCTCTCTGTCGGAGCAGACATTGATGCGTCGACAAGTGA
GGGCGGCACGCTCCTGCACTGGGCGGCCACCTCCTCGAAGACCAGCGACA
CCACGGCCTTGCTCCTGCGTTACGGAGCAAACAAGGACGTGGTGGACGGC
CAGGGCCGTTCGCCCGTGTACTTCGCGGCCATGCGCGGCCACCTCGCCAC
TTTGCGCGCTCTGCTAGCGGCCGGCGCTGACGCCACCCTTCGGTCTGGCA
CGCTCCTGATATCAGCGCCGCTCGATATCGCTGCCTACTGCGGCAATATC
GACATTGTCGTAGAGCTCGTTCGGCACGGTGTGGACGTGAACGCCGCCGA
CGGCAGCGGTTACACAGCTCTATATCATGCCGCGGGGGCTGGGATGACAG
GTGTCGCCGAGGCGCTGGTCCACGCAGGCGCCAGCTTGACCGCAGTGACT
TTCTGGGGCAAAACGCCGCTCATCGCTGCCACTAGTAGCCTCAGTATAGG
CGTTATGCGTGTGCTCCTTCAGCACGGTGCCTCTGTTCGGGGGTCTCAGG
GCAAGGGGCTCATGATGATAGGGACCGAGCCGATGTCTGTTCTCGACGCT
GCCACACTCATGCGCCACGCGGACATAATAAGAACCCTAACGGAGCACGG
CGTGAACCCGAACGATGCCGGTAGTGATGGCAAAACGGCACTGTATAAAG
CCGTGTATCACGGAAGGGCAGACCCCGCCACTATCCAACTGCTCCTCTCT
GTCGGAGCAGACATTGATGCGTCGACAAGTGAGGGCGGCACGCTCCTGCA
CTGGGCGGCCACCTCCTCGAAGACCAGCGACACCACGGCCTTGCTCCTGC
GTTACGGAGCAAACAAGGACGTGGTGGACGGCCAGGGCCGTTCGCCCGTG
TACTTCGCGGCCATGCGCGGCCACCTCGCCACTTTGCGCGCTCTGCTAGC
GGCCGGCGCTGACGCCACCCTTCGGTCTGGCACGCTCCTGATATCAGCGC
CGCTCGATATCGCTGCCTACTGCGGCAATATCGACATTGTCGTAGAGCTC
GTTCGGCACGGTGTGGACGTGAACGCCGCCGACGGCAGCGGTTACACAGC
TCTATATCATGCCGCGGGGGCTGGGATGACAGGTGTCGCCGAGGCGCTGG
TCCACGCAGGCGCCAGCTTGACCGCAGTGACTTTCTGGGGCAAAACGCCG
CTCATCGCTGCCACTAGTAGCCTCAGTATAGGCGTTATGCGTGTGCTCCT
TCAGCACGGTGCCTCTGTTCGGGGGTCTCAGGGCAAGGGGCTCATGATGA
TAGGGACCGAGCCG
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