mRNA_M-pyrifera_M_contig104995.1078.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104995.1078.1
Unique NamemRNA_M-pyrifera_M_contig104995.1078.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104995.1078.1 vs. uniprot
Match: UPI00192D5BEF (hypothetical protein n=1 Tax=Fulvivirga marina TaxID=2494733 RepID=UPI00192D5BEF)

HSP 1 Score: 55.1 bits (131), Expect = 3.360e-6
Identity = 29/65 (44.62%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    4 KWIDDLPAGLKADIGDANSKLGKFLANVSEARRAELIDAWKVL--SDKGLDVLARNPEAL--KYL 186
            KW D+LP  LKADIG+  S L       S+ARRAEL++AW V+    KG+  +  N   +  KYL
Sbjct: 1006 KWFDELPEALKADIGEQGSDLWHLFEKASDARRAELVEAWDVVIKPSKGVREITGNLNTIREKYL 1070
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BLAST of mRNA_M-pyrifera_M_contig104995.1078.1 vs. uniprot
Match: UPI001BE8DC56 (hypothetical protein n=1 Tax=Exiguobacterium algae TaxID=2751250 RepID=UPI001BE8DC56)

HSP 1 Score: 49.7 bits (117), Expect = 5.440e-5
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:  202 GAKFGDDGVESFTGIKSIWDKKFPSTVNSDGTSKLVRHHAIEQKVLNKYPNLITKKEMHSI 384
            GAK    GV  +   +  +   +P T       K+V HHAIEQ+VL +YPNLITK EMHSI
Sbjct:   24 GAKGASKGVSDY---RETFFTHYPET-----RGKVVVHHAIEQQVLKRYPNLITKAEMHSI 76
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104995.1078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI00192D5BEF3.360e-644.62hypothetical protein n=1 Tax=Fulvivirga marina Tax... [more]
UPI001BE8DC565.440e-547.54hypothetical protein n=1 Tax=Exiguobacterium algae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104995contigM-pyrifera_M_contig104995:4..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.280619-CDS-M-pyrifera_M_contig104995:3..3871622815558.280619-CDS-M-pyrifera_M_contig104995:3..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104995 4..387 -
1692277463.2236795-CDS-M-pyrifera_M_contig104995:3..3871692277463.2236795-CDS-M-pyrifera_M_contig104995:3..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104995 4..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104995.1078.1prot_M-pyrifera_M_contig104995.1078.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104995 4..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104995.1078.1

>prot_M-pyrifera_M_contig104995.1078.1 ID=prot_M-pyrifera_M_contig104995.1078.1|Name=mRNA_M-pyrifera_M_contig104995.1078.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
GKWIDDLPAGLKADIGDANSKLGKFLANVSEARRAELIDAWKVLSDKGLD
VLARNPEALKYLDDLKSGAKFGDDGVESFTGIKSIWDKKFPSTVNSDGTS
KLVRHHAIEQKVLNKYPNLITKKEMHSI
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mRNA from alignment at M-pyrifera_M_contig104995:4..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104995.1078.1 ID=mRNA_M-pyrifera_M_contig104995.1078.1|Name=mRNA_M-pyrifera_M_contig104995.1078.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig104995:4..387- (Macrocystis pyrifera P11B4 male)
GGAAAATGGATTGATGATCTTCCGGCTGGGTTAAAAGCAGATATTGGAGA
CGCCAATAGCAAACTAGGAAAGTTCCTTGCCAATGTTTCTGAGGCAAGAA
GAGCGGAGTTGATCGATGCGTGGAAGGTGCTAAGTGATAAGGGCTTAGAT
GTCTTAGCTAGAAACCCAGAAGCTCTTAAGTATCTTGATGACTTGAAAAG
TGGAGCAAAGTTTGGTGATGATGGAGTTGAATCTTTTACAGGAATTAAAA
GTATTTGGGATAAGAAATTTCCTAGCACAGTCAATTCAGATGGTACATCT
AAATTAGTCCGCCATCATGCAATTGAACAAAAGGTGTTGAATAAATATCC
AAACCTTATTACTAAAAAAGAAATGCATTCTATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104995:4..387-

>mRNA_M-pyrifera_M_contig104995.1078.1 ID=mRNA_M-pyrifera_M_contig104995.1078.1|Name=mRNA_M-pyrifera_M_contig104995.1078.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig104995:4..387- (Macrocystis pyrifera P11B4 male)
GGAAAATGGATTGATGATCTTCCGGCTGGGTTAAAAGCAGATATTGGAGA
CGCCAATAGCAAACTAGGAAAGTTCCTTGCCAATGTTTCTGAGGCAAGAA
GAGCGGAGTTGATCGATGCGTGGAAGGTGCTAAGTGATAAGGGCTTAGAT
GTCTTAGCTAGAAACCCAGAAGCTCTTAAGTATCTTGATGACTTGAAAAG
TGGAGCAAAGTTTGGTGATGATGGAGTTGAATCTTTTACAGGAATTAAAA
GTATTTGGGATAAGAAATTTCCTAGCACAGTCAATTCAGATGGTACATCT
AAATTAGTCCGCCATCATGCAATTGAACAAAAGGTGTTGAATAAATATCC
AAACCTTATTACTAAAAAAGAAATGCATTCTATCGGAAAATGGATTGATG
ATCTTCCGGCTGGGTTAAAAGCAGATATTGGAGACGCCAATAGCAAACTA
GGAAAGTTCCTTGCCAATGTTTCTGAGGCAAGAAGAGCGGAGTTGATCGA
TGCGTGGAAGGTGCTAAGTGATAAGGGCTTAGATGTCTTAGCTAGAAACC
CAGAAGCTCTTAAGTATCTTGATGACTTGAAAAGTGGAGCAAAGTTTGGT
GATGATGGAGTTGAATCTTTTACAGGAATTAAAAGTATTTGGGATAAGAA
ATTTCCTAGCACAGTCAATTCAGATGGTACATCTAAATTAGTCCGCCATC
ATGCAATTGAACAAAAGGTGTTGAATAAATATCCAAACCTTATTACTAAA
AAAGAAATGCATTCTATC
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