mRNA_M-pyrifera_M_contig104987.1075.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104987.1075.1
Unique NamemRNA_M-pyrifera_M_contig104987.1075.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A7S0WNL5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0WNL5_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 3.090e-26
Identity = 60/105 (57.14%), Postives = 72/105 (68.57%), Query Frame = 1
Query:    7 GLVVSQPALEL--PRVTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
            G V+SQP  EL         VK   EL+L GK IEK+ GF PFVNLE LW+N N+L++++NLD NFRI  LYAQDN+I TL GSL  F FL  L+L+NN L DLD
Sbjct:    6 GPVISQPGKELVGEGKNMKYVKECKELYLGGKGIEKIRGFEPFVNLECLWLNSNKLKKINNLDQNFRIKALYAQDNQICTLKGSLECFHFLETLDLSNNQLRDLD 110          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: D8TIT4_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TIT4_VOLCA)

HSP 1 Score: 107 bits (266), Expect = 9.230e-26
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    7 GLVVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
             +VVS+P  EL      A  +K  TE++L GK IEK+ GF PFVNLE LW+N N+L++L+NLD+  R+  LYA DN+I TL GSL+ FKFL +L+L+NN L DL+
Sbjct:    2 AVVVSEPLRELVGGGENAKYIKECTEMYLCGKGIEKIRGFEPFVNLESLWINGNKLKKLNNLDNQKRLKALYAHDNQICTLKGSLIDFKFLEILDLSNNQLRDLE 106          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A8J4FSV9_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4FSV9_9CHLO)

HSP 1 Score: 105 bits (263), Expect = 8.930e-25
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    7 GLVVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
             +VVS+P  EL      A  +K  TE++L GK IEK+ GF PFVNLE LW+N N+L++L+NLD+  R+  LYA DN+I TL GSL+ FKFL +L+L+NN L DL+
Sbjct:    2 AVVVSEPLRELVGGGENAKYIKECTEMYLCGKGIEKIRGFEPFVNLESLWINGNKLKKLNNLDNQKRLKSLYAHDNQICTLKGSLIIFKFLEMLDLSNNQLRDLE 106          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A7S0V0N4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0V0N4_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 1.360e-24
Identity = 56/103 (54.37%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   13 VVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
            ++S+P LEL         VK  TE++L+ KKIEK+ GF  FVNL+VLW+N N LR+++NLD+NFR+  LYAQDN I TL GSL  FKF+  L+L+NN+L +LD
Sbjct:    3 IISEPRLELVGGGQNIKYVKECTEVYLSNKKIEKIRGFEDFVNLQVLWINGNCLRKINNLDNNFRLRGLYAQDNNICTLKGSLSCFKFMEELDLSNNTLRNLD 105          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A150G7G9_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7G9_GONPE)

HSP 1 Score: 103 bits (257), Expect = 1.740e-24
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    7 GLVVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
             +VVS+P  E+      A  +K  TEL+L  K IEKL GF PF+NLE LW+N N+L++L+NL+ N R+  LYAQDN+I TL GSL  FKFL  L+L+NN L DLD
Sbjct:    3 AVVVSEPCKEIVGGGSNAKYIKECTELYLGNKGIEKLRGFEPFLNLESLWLNGNKLKKLNNLECNKRLKALYAQDNQICTLKGSLQCFKFLETLDLSNNLLRDLD 107          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A8HWC6_CHLRE (Flagellar associated protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8HWC6_CHLRE)

HSP 1 Score: 103 bits (258), Expect = 6.750e-24
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   13 VVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
            VVS+P  EL      A  +K  TELHL  K IEKL GF  FVNLE LW+N N+L++L+NLD+  R+  LYAQDN+I TL GSL  FKFL  L+L+NN L DLD
Sbjct:    4 VVSEPHKELVGGGENAIYIKECTELHLGSKGIEKLRGFEVFVNLESLWLNGNKLKKLNNLDAQTRLKALYAQDNQICTLKGSLEHFKFLETLDLSNNQLRDLD 106          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A835T1H7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T1H7_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 2.620e-23
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   13 VVSQPALELPR--VTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADLD 315
            V+S+P  EL      A  +K   ELHL  K IEKL GF  FVNLE LW+N N+L++L+NLD+  R+  LYAQDN+I TL GSL  FKFL  L+L+NN L DLD
Sbjct:    4 VISEPHKELVGGGQNAKYIKECIELHLGSKGIEKLRGFEVFVNLESLWLNDNKLKKLNNLDAQKRLKALYAQDNQICTLKGSLENFKFLETLDLSNNQLRDLD 106          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A067CBD5_SAPPC (Uncharacterized protein (Fragment) n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBD5_SAPPC)

HSP 1 Score: 94.7 bits (234), Expect = 1.220e-20
Identity = 53/104 (50.96%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 LEGLVVSQPALELPRVTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADL 312
            ++ + VS+P  EL       VK  TEL LA ++I+ L  F PFV+LEVLW+N N + +L  LD+ FRI  L+AQ+NRI T+ GSLL F FLR L L NN L DL
Sbjct:    4 IDEMRVSEPHKELAVANEKYVKNCTELVLAHREIDVLGNFEPFVSLEVLWINDNNIEKLTGLDTCFRIKYLFAQNNRISTVDGSLLHFTFLRELRLFNNRLQDL 107          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A1V9YXD5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXD5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.410e-20
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   16 VSQPALELPRVTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADL 312
            VS+P  EL       VK  TEL +A + I+ L  F PFV+LEVLWVN N + +L  LD+ FRI  LYAQ+NRI T+ GSLL F FLR L L NN L DL
Sbjct:    3 VSEPHKELAVCNEKYVKNCTELVMAHRGIDVLGNFEPFVSLEVLWVNDNNIEKLTGLDTCFRIKYLYAQNNRIATVEGSLLHFTFLRELRLFNNRLQDL 101          
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Match: A0A5B8MVZ2_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MVZ2_9CHLO)

HSP 1 Score: 91.3 bits (225), Expect = 5.820e-20
Identity = 45/84 (53.57%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   61 VKATTELHLAGKKIEKLWGFAPFVNLEVLWVNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNSLADL 312
            V+  TELHLA + IE++ GF    NLEVLW+N N+L  + NLD+NFRI  LY   N I +L GS+ +F FL++LNL NN L+DL
Sbjct:   24 VRECTELHLANQGIEEIHGFERLSNLEVLWLNNNKLVSVTNLDANFRIKELYLHSNMITSLQGSIRKFHFLQILNLENNCLSDL 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104987.1075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0WNL5_9CHLO3.090e-2657.14Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
D8TIT4_VOLCA9.230e-2653.33Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A8J4FSV9_9CHLO8.930e-2553.33Uncharacterized protein n=3 Tax=Volvox TaxID=3066 ... [more]
A0A7S0V0N4_9CHLO1.360e-2454.37Hypothetical protein (Fragment) n=2 Tax=Polytomell... [more]
A0A150G7G9_GONPE1.740e-2454.29Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A8HWC6_CHLRE6.750e-2457.28Flagellar associated protein n=2 Tax=Chlamydomonas... [more]
A0A835T1H7_9CHLO2.620e-2355.34Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A067CBD5_SAPPC1.220e-2050.96Uncharacterized protein (Fragment) n=3 Tax=Saprole... [more]
A0A1V9YXD5_9STRA5.410e-2054.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5B8MVZ2_9CHLO5.820e-2053.57Uncharacterized protein n=1 Tax=Chloropicon primus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104987contigM-pyrifera_M_contig104987:3..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1e-21
Seed eggNOG ortholog3067.XP_002945949.1
KEGG koko:K16532,ko:K16717,ko:K17579
Hectar predicted targeting categoryother localisation
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036,ko04812
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.0992002-CDS-M-pyrifera_M_contig104987:2..3171622815558.0992002-CDS-M-pyrifera_M_contig104987:2..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104987 3..317 -
1692277463.1020427-CDS-M-pyrifera_M_contig104987:2..3171692277463.1020427-CDS-M-pyrifera_M_contig104987:2..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104987 3..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104987.1075.1prot_M-pyrifera_M_contig104987.1075.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104987 3..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104987.1075.1

>prot_M-pyrifera_M_contig104987.1075.1 ID=prot_M-pyrifera_M_contig104987.1075.1|Name=mRNA_M-pyrifera_M_contig104987.1075.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
LEGLVVSQPALELPRVTAPDVKATTELHLAGKKIEKLWGFAPFVNLEVLW
VNRNRLRELDNLDSNFRISRLYAQDNRIDTLAGSLLRFKFLRVLNLANNS
LADLD
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mRNA from alignment at M-pyrifera_M_contig104987:3..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104987.1075.1 ID=mRNA_M-pyrifera_M_contig104987.1075.1|Name=mRNA_M-pyrifera_M_contig104987.1075.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig104987:3..317- (Macrocystis pyrifera P11B4 male)
TTGGAAGGCTTGGTAGTGAGCCAGCCGGCTTTGGAATTACCAAGAGTAAC GGCACCTGACGTGAAAGCGACAACGGAGCTGCATCTTGCCGGGAAGAAGA TTGAAAAGTTGTGGGGCTTTGCTCCTTTTGTGAACTTGGAGGTGCTGTGG GTGAATCGCAATCGTTTGCGGGAGCTAGACAATCTCGATTCCAACTTTCG GATTTCAAGGTTGTATGCGCAGGACAATCGCATTGACACTTTGGCAGGGA GTTTATTGCGCTTCAAATTTTTGCGTGTTTTGAATTTGGCAAACAATAGT CTTGCGGATCTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104987:3..317-

>mRNA_M-pyrifera_M_contig104987.1075.1 ID=mRNA_M-pyrifera_M_contig104987.1075.1|Name=mRNA_M-pyrifera_M_contig104987.1075.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig104987:3..317- (Macrocystis pyrifera P11B4 male)
TTGGAAGGCTTGGTAGTGAGCCAGCCGGCTTTGGAATTACCAAGAGTAAC
GGCACCTGACGTGAAAGCGACAACGGAGCTGCATCTTGCCGGGAAGAAGA
TTGAAAAGTTGTGGGGCTTTGCTCCTTTTGTGAACTTGGAGGTGCTGTGG
GTGAATCGCAATCGTTTGCGGGAGCTAGACAATCTCGATTCCAACTTTCG
GATTTCAAGGTTGTATGCGCAGGACAATCGCATTGACACTTTGGCAGGGA
GTTTATTGCGCTTCAAATTTTTGCGTGTTTTGAATTTGGCAAACAATAGT
CTTGCGGATCTGGACTTGGAAGGCTTGGTAGTGAGCCAGCCGGCTTTGGA
ATTACCAAGAGTAACGGCACCTGACGTGAAAGCGACAACGGAGCTGCATC
TTGCCGGGAAGAAGATTGAAAAGTTGTGGGGCTTTGCTCCTTTTGTGAAC
TTGGAGGTGCTGTGGGTGAATCGCAATCGTTTGCGGGAGCTAGACAATCT
CGATTCCAACTTTCGGATTTCAAGGTTGTATGCGCAGGACAATCGCATTG
ACACTTTGGCAGGGAGTTTATTGCGCTTCAAATTTTTGCGTGTTTTGAAT
TTGGCAAACAATAGTCTTGCGGATCTGGAC
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