mRNA_M-pyrifera_M_contig104984.1074.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: UPI000711E472 (replication factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E472) HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12 Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228 LE FV TG L +E+ N++ +YGG R+AVS +TT+L+AG ++ DGR + EGSK++ A+E + II+ T Sbjct: 188 LEGMIFVLTGLNESLTREEMSNLIQQYGGTERSAVSKKTTYLIAGFEMEDGRPITEGSKYKAAIEKGVEIINEDTL 263
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A196SBT2_BLAHN (Replication factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SBT2_BLAHN) HSP 1 Score: 70.1 bits (170), Expect = 2.660e-12 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1 Query: 16 FVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIID 216 FV TG L DE+ N++ +GGV + AVS +TT+LVAG ++ DGR + EGSK++ AVE ++ IID Sbjct: 171 FVLTGLNESLTRDEMSNLIQNHGGVEKTAVSGKTTYLVAGFEMEDGRPIQEGSKYKKAVEKNVRIID 237
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A077ZNZ6_STYLE (Replication factor C subunit 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZNZ6_STYLE) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9 Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228 LE +FV +GE + +L + V+E GG V AVS +T++L+ G KL DGR +GSK+ A IPII F Sbjct: 446 LEGLTFVISGEFQNISRQKLESTVVEKGGRVTQAVSGKTSYLIIGYKLEDGRTPEQGSKYAAAKNKKIPIITELEF 521
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A7S3KND5_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KND5_EUPCR) HSP 1 Score: 59.7 bits (143), Expect = 2.300e-9 Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPII 213 LE +FVFTG + + L V++ GG V + VS +TT+L+ G KL DGREV+ SK R A E I + Sbjct: 43 LEGVTFVFTGLFENISRERLEKFVIDLGGRVTSGVSGKTTYLITGYKLEDGREVNTSSKFRKAKEKGISTM 113
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A7S3IGI1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IGI1_9SPIT) HSP 1 Score: 60.1 bits (144), Expect = 2.990e-9 Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1 Query: 13 SFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228 +FV TG + ++L ++++ GG +AVS +T++LVAG+ L DGREV+E SK+R AV I I+ F Sbjct: 79 TFVVTGIFENITREKLEALIVQKGGRKTSAVSGKTSYLVAGKLLEDGREVNESSKYRNAVSKKIEILTEEGF 150
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A8J2SDD5_9STRA (ATP-dependent DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD5_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.490e-9 Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228 L + FV TG L LD D+++ + ++GG AVSS+TT L+AGE L DGR V E K++ AV II F Sbjct: 660 LAGKVFVTTGVLPTLDRDQIKAIATKHGGRCTGAVSSKTTHLIAGEVLDDGRPVAESGKYKKAVTLGTAIISEAEF 735
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A1R2CV11_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CV11_9CILI) HSP 1 Score: 59.7 bits (143), Expect = 1.220e-8 Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTT 222 L ++FV TG L + DEL ++ +YG V +VSSRT+ L+ G KL DGR EG+K++ A E + ++D T Sbjct: 161 LTGQTFVITGVLKGYERDELTEILKKYGARVTGSVSSRTSCLIYGMKLEDGRHYSEGNKYKKARELNTTMMDET 234
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A0V0QZL4_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QZL4_PSEPJ) HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8 Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1 Query: 13 SFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVEN---DIPIIDTTTF 228 +FVFTG L L ++ + +V +GG V VS +T++LV GEKL DGREV EGSK+ + I II+ + F Sbjct: 853 TFVFTGVLPSLQREDAQLLVKNHGGKVTGNVSGKTSYLVIGEKLEDGREVKEGSKYVNSTTKFAGKIKIINESEF 927
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A7AMJ0_BABBO (Replication factor C subunit 1 n=1 Tax=Babesia bovis TaxID=5865 RepID=A7AMJ0_BABBO) HSP 1 Score: 58.9 bits (141), Expect = 2.300e-8 Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 Query: 16 FVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVE 195 FVFTG L +D D + +V GG+ +VSS+T +LV GEKL DGR GSK++ A+E Sbjct: 319 FVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLVYGEKLEDGRHYTTGSKYKKALE 378
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A1R2BZZ8_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZZ8_9CILI) HSP 1 Score: 58.2 bits (139), Expect = 4.270e-8 Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1 Query: 1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTT 222 L ++FV TG L + DE+ ++ YG V +VS +T+ L+ G KL DGR EG+K++ A E + I+D T Sbjct: 162 LTGQTFVITGVLKSYERDEITEILRRYGAKVTGSVSGKTSCLIHGMKLEDGRHYSEGNKYKKAKELNTTIMDET 235 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig104984.1074.1 >prot_M-pyrifera_M_contig104984.1074.1 ID=prot_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDback to top mRNA from alignment at M-pyrifera_M_contig104984:3..230- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig104984.1074.1 ID=mRNA_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig104984:3..230- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig104984:3..230- >mRNA_M-pyrifera_M_contig104984.1074.1 ID=mRNA_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig104984:3..230- (Macrocystis pyrifera P11B4 male)back to top |