mRNA_M-pyrifera_M_contig104984.1074.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104984.1074.1
Unique NamemRNA_M-pyrifera_M_contig104984.1074.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: UPI000711E472 (replication factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711E472)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228
            LE   FV TG    L  +E+ N++ +YGG  R+AVS +TT+L+AG ++ DGR + EGSK++ A+E  + II+  T 
Sbjct:  188 LEGMIFVLTGLNESLTREEMSNLIQQYGGTERSAVSKKTTYLIAGFEMEDGRPITEGSKYKAAIEKGVEIINEDTL 263          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A196SBT2_BLAHN (Replication factor C subunit 1 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SBT2_BLAHN)

HSP 1 Score: 70.1 bits (170), Expect = 2.660e-12
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   16 FVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIID 216
            FV TG    L  DE+ N++  +GGV + AVS +TT+LVAG ++ DGR + EGSK++ AVE ++ IID
Sbjct:  171 FVLTGLNESLTRDEMSNLIQNHGGVEKTAVSGKTTYLVAGFEMEDGRPIQEGSKYKKAVEKNVRIID 237          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A077ZNZ6_STYLE (Replication factor C subunit 1 n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZNZ6_STYLE)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-9
Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228
            LE  +FV +GE   +   +L + V+E GG V  AVS +T++L+ G KL DGR   +GSK+  A    IPII    F
Sbjct:  446 LEGLTFVISGEFQNISRQKLESTVVEKGGRVTQAVSGKTSYLIIGYKLEDGRTPEQGSKYAAAKNKKIPIITELEF 521          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A7S3KND5_EUPCR (Hypothetical protein (Fragment) n=1 Tax=Euplotes crassus TaxID=5936 RepID=A0A7S3KND5_EUPCR)

HSP 1 Score: 59.7 bits (143), Expect = 2.300e-9
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPII 213
            LE  +FVFTG    +  + L   V++ GG V + VS +TT+L+ G KL DGREV+  SK R A E  I  +
Sbjct:   43 LEGVTFVFTGLFENISRERLEKFVIDLGGRVTSGVSGKTTYLITGYKLEDGREVNTSSKFRKAKEKGISTM 113          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A7S3IGI1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IGI1_9SPIT)

HSP 1 Score: 60.1 bits (144), Expect = 2.990e-9
Identity = 30/72 (41.67%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   13 SFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228
            +FV TG    +  ++L  ++++ GG   +AVS +T++LVAG+ L DGREV+E SK+R AV   I I+    F
Sbjct:   79 TFVVTGIFENITREKLEALIVQKGGRKTSAVSGKTSYLVAGKLLEDGREVNESSKYRNAVSKKIEILTEEGF 150          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A8J2SDD5_9STRA (ATP-dependent DNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDD5_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.490e-9
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTTTF 228
            L  + FV TG L  LD D+++ +  ++GG    AVSS+TT L+AGE L DGR V E  K++ AV     II    F
Sbjct:  660 LAGKVFVTTGVLPTLDRDQIKAIATKHGGRCTGAVSSKTTHLIAGEVLDDGRPVAESGKYKKAVTLGTAIISEAEF 735          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A1R2CV11_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CV11_9CILI)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-8
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTT 222
            L  ++FV TG L   + DEL  ++ +YG  V  +VSSRT+ L+ G KL DGR   EG+K++ A E +  ++D T
Sbjct:  161 LTGQTFVITGVLKGYERDELTEILKKYGARVTGSVSSRTSCLIYGMKLEDGRHYSEGNKYKKARELNTTMMDET 234          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A0V0QZL4_PSEPJ (p-loop containing nucleoside triphosphate hydrolase n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QZL4_PSEPJ)

HSP 1 Score: 59.7 bits (143), Expect = 1.240e-8
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   13 SFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVEN---DIPIIDTTTF 228
            +FVFTG L  L  ++ + +V  +GG V   VS +T++LV GEKL DGREV EGSK+  +       I II+ + F
Sbjct:  853 TFVFTGVLPSLQREDAQLLVKNHGGKVTGNVSGKTSYLVIGEKLEDGREVKEGSKYVNSTTKFAGKIKIINESEF 927          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A7AMJ0_BABBO (Replication factor C subunit 1 n=1 Tax=Babesia bovis TaxID=5865 RepID=A7AMJ0_BABBO)

HSP 1 Score: 58.9 bits (141), Expect = 2.300e-8
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   16 FVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVE 195
            FVFTG L  +D D +  +V   GG+   +VSS+T +LV GEKL DGR    GSK++ A+E
Sbjct:  319 FVFTGVLDAIDRDSVVELVRSLGGLTTGSVSSKTNYLVYGEKLEDGRHYTTGSKYKKALE 378          
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Match: A0A1R2BZZ8_9CILI (Replication factor C subunit 1 n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BZZ8_9CILI)

HSP 1 Score: 58.2 bits (139), Expect = 4.270e-8
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVDGREVHEGSKHRGAVENDIPIIDTT 222
            L  ++FV TG L   + DE+  ++  YG  V  +VS +T+ L+ G KL DGR   EG+K++ A E +  I+D T
Sbjct:  162 LTGQTFVITGVLKSYERDEITEILRRYGAKVTGSVSGKTSCLIHGMKLEDGRHYSEGNKYKKAKELNTTIMDET 235          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104984.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000711E4721.040e-1243.42replication factor C subunit 1 n=1 Tax=Blastocysti... [more]
A0A196SBT2_BLAHN2.660e-1249.25Replication factor C subunit 1 n=1 Tax=Blastocysti... [more]
A0A077ZNZ6_STYLE1.020e-942.11Replication factor C subunit 1 n=1 Tax=Stylonychia... [more]
A0A7S3KND5_EUPCR2.300e-943.66Hypothetical protein (Fragment) n=1 Tax=Euplotes c... [more]
A0A7S3IGI1_9SPIT2.990e-941.67Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A8J2SDD5_9STRA3.490e-943.42ATP-dependent DNA helicase n=1 Tax=Pelagomonas cal... [more]
A0A1R2CV11_9CILI1.220e-841.89Replication factor C subunit 1 n=1 Tax=Stentor coe... [more]
A0A0V0QZL4_PSEPJ1.240e-844.00p-loop containing nucleoside triphosphate hydrolas... [more]
A7AMJ0_BABBO2.300e-848.33Replication factor C subunit 1 n=1 Tax=Babesia bov... [more]
A0A1R2BZZ8_9CILI4.270e-839.19Replication factor C subunit 1 n=1 Tax=Stentor coe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104984contigM-pyrifera_M_contig104984:3..230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.0595894-CDS-M-pyrifera_M_contig104984:2..2301622815558.0595894-CDS-M-pyrifera_M_contig104984:2..230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104984 3..230 -
1692277463.091207-CDS-M-pyrifera_M_contig104984:2..2301692277463.091207-CDS-M-pyrifera_M_contig104984:2..230Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104984 3..230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104984.1074.1prot_M-pyrifera_M_contig104984.1074.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104984 3..230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104984.1074.1

>prot_M-pyrifera_M_contig104984.1074.1 ID=prot_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=76bp
LEKRSFVFTGELTPLDADELRNVVLEYGGVVRNAVSSRTTFLVAGEKLVD
GREVHEGSKHRGAVENDIPIIDTTTF
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mRNA from alignment at M-pyrifera_M_contig104984:3..230-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104984.1074.1 ID=mRNA_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig104984:3..230- (Macrocystis pyrifera P11B4 male)
TTGGAGAAGCGGAGTTTCGTCTTCACTGGAGAATTGACGCCATTGGATGC AGATGAACTTCGCAACGTTGTGCTCGAGTATGGAGGAGTGGTGAGAAACG CCGTATCCTCCCGAACAACTTTCCTTGTGGCTGGCGAGAAGCTAGTGGAT GGACGAGAAGTCCACGAAGGCTCCAAGCATCGAGGAGCAGTGGAAAACGA CATTCCCATCATTGACACAACAACCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104984:3..230-

>mRNA_M-pyrifera_M_contig104984.1074.1 ID=mRNA_M-pyrifera_M_contig104984.1074.1|Name=mRNA_M-pyrifera_M_contig104984.1074.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig104984:3..230- (Macrocystis pyrifera P11B4 male)
TTGGAGAAGCGGAGTTTCGTCTTCACTGGAGAATTGACGCCATTGGATGC
AGATGAACTTCGCAACGTTGTGCTCGAGTATGGAGGAGTGGTGAGAAACG
CCGTATCCTCCCGAACAACTTTCCTTGTGGCTGGCGAGAAGCTAGTGGAT
GGACGAGAAGTCCACGAAGGCTCCAAGCATCGAGGAGCAGTGGAAAACGA
CATTCCCATCATTGACACAACAACCTTCTTGGAGAAGCGGAGTTTCGTCT
TCACTGGAGAATTGACGCCATTGGATGCAGATGAACTTCGCAACGTTGTG
CTCGAGTATGGAGGAGTGGTGAGAAACGCCGTATCCTCCCGAACAACTTT
CCTTGTGGCTGGCGAGAAGCTAGTGGATGGACGAGAAGTCCACGAAGGCT
CCAAGCATCGAGGAGCAGTGGAAAACGACATTCCCATCATTGACACAACA
ACCTTC
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