mRNA_M-pyrifera_M_contig104982.1073.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104982.1073.1
Unique NamemRNA_M-pyrifera_M_contig104982.1073.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104982.1073.1 vs. uniprot
Match: A0A2E7KC16_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KC16_9PLAN)

HSP 1 Score: 415 bits (1066), Expect = 1.470e-144
Identity = 211/212 (99.53%), Postives = 212/212 (100.00%), Query Frame = 1 
Query:    1 FAQLTGKQMEQLRNMIDALDLEGLRQLQETYGNSMDDAEEVSINLPLNQLDLQLPVYSLEWDFGREEADCSQERQSCLQSIIQLEELVNSFAPFSTEKHFQELQAQREKDRAEDERRRSNRTWRETVSGFLFGAVWNIGVILIGCLLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC 636
            FAQLTGKQMEQLRNMIDALDLEGLRQLQETYGNSMDDAEEVSINLPLNQLDLQLPVYSLEWDFGR+EADCSQERQSCLQSIIQLEELVNSFAPFSTEKHFQELQAQREKDRAEDERRRSNRTWRETVSGFLFGAVWNIGVILIGCLLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC
Sbjct:   70 FAQLTGKQMEQLRNMIDALDLEGLRQLQETYGNSMDDAEEVSINLPLNQLDLQLPVYSLEWDFGRQEADCSQERQSCLQSIIQLEELVNSFAPFSTEKHFQELQAQREKDRAEDERRRSNRTWRETVSGFLFGAVWNIGVILIGCLLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC 281
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BLAST of mRNA_M-pyrifera_M_contig104982.1073.1 vs. uniprot
Match: A0A517Q534_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517Q534_9PLAN)

HSP 1 Score: 276 bits (707), Expect = 5.100e-90
Identity = 142/212 (66.98%), Postives = 167/212 (78.77%), Query Frame = 1 
Query:    1 FAQLTGKQMEQLRNMIDALDLEGLRQLQETYGNSMDDAEEVSINLPLNQLDLQLPVYSLEWDFGREEADCSQERQSCLQSIIQLEELVNSFAPFSTEKHFQELQAQREKDRAEDERRRSNRTWRETVSGFLFGAVWNIGVILIGCLLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC 636
            FAQLT KQMEQLRN IDALDLEGLRQLQE YGNS+DDAEEVS+ +P +QLDL+LPVYSL W   REEADC + R++ LQSIIQLEELVNSFAPFS EKHFQEL AQREKD AEDERRR N +W E V+ +       + + ++   +CLIP++G YELGKT+WYL+ YES+ GEVV C  K  ++S+GY IVVQTKAG  L+GSWYG RE C
Sbjct:   70 FAQLTEKQMEQLRNTIDALDLEGLRQLQEKYGNSIDDAEEVSLEIPFSQLDLRLPVYSLGWGLEREEADCRKRREAYLQSIIQLEELVNSFAPFSAEKHFQELHAQREKDHAEDERRRLNPSWAEVVTDYFLRGTLYLWITMMIFTVCLIPLVGFYELGKTVWYLSRYESEPGEVVGCHWKETEHSSGYAIVVQTKAGVHLTGSWYGRRENC 281
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BLAST of mRNA_M-pyrifera_M_contig104982.1073.1 vs. uniprot
Match: A0A517VWR1_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VWR1_9PLAN)

HSP 1 Score: 82.0 bits (201), Expect = 2.970e-16
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:  388 FLFGAVWNIGVILIGCLLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC 636
            ++FG  ++  +IL   ++C +P+ GVYELGKT WYL  +E D G VV C  K   + + Y  VV+TK G R++G WYGS+ +C
Sbjct:    7 YIFGYTFSAVIIL---MVCAVPVFGVYELGKTTWYLTQFEHDTGTVVGCTGKRFKHKSKYAYVVETKNGARITGRWYGSKSHC 86
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BLAST of mRNA_M-pyrifera_M_contig104982.1073.1 vs. uniprot
Match: A0A2E2BY20_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BY20_9PLAN)

HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:  436 LLCLIPIIGVYELGKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGSREYC 636
            L+C +P++G YELGKT+WYL  YE   G VV  + K       Y  VV+T  GTR++  WYGS+++C
Sbjct:   20 LVCAVPVVGCYELGKTLWYLTQYEDQTGTVVGYKSKQFKQGTKYACVVKTADGTRITARWYGSKDWC 86
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104982.1073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2E7KC16_9PLAN1.470e-14499.53Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
A0A517Q534_9PLAN5.100e-9066.98Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517VWR1_9PLAN2.970e-1644.58Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2E2BY20_9PLAN3.230e-1346.27Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104982contigM-pyrifera_M_contig104982:3..638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size636
Cds size612
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.00342-CDS-M-pyrifera_M_contig104982:2..6141622815558.00342-CDS-M-pyrifera_M_contig104982:2..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104982 3..614 -
1692277463.070843-CDS-M-pyrifera_M_contig104982:2..6141692277463.070843-CDS-M-pyrifera_M_contig104982:2..614Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104982 3..614 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815558.0139613-UTR-M-pyrifera_M_contig104982:614..6381622815558.0139613-UTR-M-pyrifera_M_contig104982:614..638Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104982 615..638 -
1692277463.081292-UTR-M-pyrifera_M_contig104982:614..6381692277463.081292-UTR-M-pyrifera_M_contig104982:614..638Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104982 615..638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104982.1073.1prot_M-pyrifera_M_contig104982.1073.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104982 3..614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104982.1073.1

>prot_M-pyrifera_M_contig104982.1073.1 ID=prot_M-pyrifera_M_contig104982.1073.1|Name=mRNA_M-pyrifera_M_contig104982.1073.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp
MEQLRNMIDALDLEGLRQLQETYGNSMDDAEEVSINLPLNQLDLQLPVYS
LEWDFGREEADCSQERQSCLQSIIQLEELVNSFAPFSTEKHFQELQAQRE
KDRAEDERRRSNRTWRETVSGFLFGAVWNIGVILIGCLLCLIPIIGVYEL
GKTIWYLNHYESDLGEVVACELKGADNSAGYVIVVQTKAGTRLSGSWYGS
REYC
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mRNA from alignment at M-pyrifera_M_contig104982:3..638-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104982.1073.1 ID=mRNA_M-pyrifera_M_contig104982.1073.1|Name=mRNA_M-pyrifera_M_contig104982.1073.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig104982:3..638- (Macrocystis pyrifera P11B4 male)
TTTGCTCAGCTTACCGGGAAGCAGATGGAGCAGTTACGAAATATGATCGA
TGCTCTGGATCTGGAGGGGCTTAGGCAGTTGCAGGAAACGTATGGCAATT
CGATGGATGATGCAGAAGAGGTCTCCATCAACCTTCCATTAAATCAGTTG
GATCTGCAACTGCCCGTCTATTCGCTGGAGTGGGATTTTGGGCGGGAGGA
GGCAGACTGCAGTCAAGAGAGGCAGTCGTGTCTGCAATCGATCATTCAGC
TGGAAGAACTGGTCAATTCATTCGCTCCTTTTTCTACGGAAAAGCATTTT
CAGGAACTGCAGGCGCAACGGGAAAAAGATCGAGCTGAAGATGAACGGCG
TCGTTCGAATCGAACATGGAGAGAGACTGTGTCAGGATTTCTCTTTGGTG
CTGTTTGGAATATTGGAGTAATCCTGATTGGCTGTTTACTCTGCCTGATT
CCCATCATCGGAGTCTATGAATTGGGAAAAACGATCTGGTATTTGAACCA
TTACGAGAGTGATCTGGGTGAAGTGGTGGCTTGCGAGTTGAAAGGGGCCG
ATAATTCTGCTGGCTATGTGATCGTAGTCCAGACCAAAGCGGGAACTCGG
CTGTCTGGTAGCTGGTACGGCAGCAGGGAATACTGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104982:3..638-

>mRNA_M-pyrifera_M_contig104982.1073.1 ID=mRNA_M-pyrifera_M_contig104982.1073.1|Name=mRNA_M-pyrifera_M_contig104982.1073.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig104982:3..638- (Macrocystis pyrifera P11B4 male)
ATGGAGCAGTTACGAAATATGATCGATGCTCTGGATCTGGAGGGGCTTAG
GCAGTTGCAGGAAACGTATGGCAATTCGATGGATGATGCAGAAGAGGTCT
CCATCAACCTTCCATTAAATCAGTTGGATCTGCAACTGCCCGTCTATTCG
CTGGAGTGGGATTTTGGGCGGGAGGAGGCAGACTGCAGTCAAGAGAGGCA
GTCGTGTCTGCAATCGATCATTCAGCTGGAAGAACTGGTCAATTCATTCG
CTCCTTTTTCTACGGAAAAGCATTTTCAGGAACTGCAGGCGCAACGGGAA
AAAGATCGAGCTGAAGATGAACGGCGTCGTTCGAATCGAACATGGAGAGA
GACTGTGTCAGGATTTCTCTTTGGTGCTGTTTGGAATATTGGAGTAATCC
TGATTGGCTGTTTACTCTGCCTGATTCCCATCATCGGAGTCTATGAATTG
GGAAAAACGATCTGGTATTTGAACCATTACGAGAGTGATCTGGGTGAAGT
GGTGGCTTGCGAGTTGAAAGGGGCCGATAATTCTGCTGGCTATGTGATCG
TAGTCCAGACCAAAGCGGGAACTCGGCTGTCTGGTAGCTGGTACGGCAGC
AGGGAATACTGCATGGAGCAGTTACGAAATATGATCGATGCTCTGGATCT
GGAGGGGCTTAGGCAGTTGCAGGAAACGTATGGCAATTCGATGGATGATG
CAGAAGAGGTCTCCATCAACCTTCCATTAAATCAGTTGGATCTGCAACTG
CCCGTCTATTCGCTGGAGTGGGATTTTGGGCGGGAGGAGGCAGACTGCAG
TCAAGAGAGGCAGTCGTGTCTGCAATCGATCATTCAGCTGGAAGAACTGG
TCAATTCATTCGCTCCTTTTTCTACGGAAAAGCATTTTCAGGAACTGCAG
GCGCAACGGGAAAAAGATCGAGCTGAAGATGAACGGCGTCGTTCGAATCG
AACATGGAGAGAGACTGTGTCAGGATTTCTCTTTGGTGCTGTTTGGAATA
TTGGAGTAATCCTGATTGGCTGTTTACTCTGCCTGATTCCCATCATCGGA
GTCTATGAATTGGGAAAAACGATCTGGTATTTGAACCATTACGAGAGTGA
TCTGGGTGAAGTGGTGGCTTGCGAGTTGAAAGGGGCCGATAATTCTGCTG
GCTATGTGATCGTAGTCCAGACCAAAGCGGGAACTCGGCTGTCTGGTAGC
TGGTACGGCAGCAGGGAATACTGC
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