mRNA_M-pyrifera_M_contig104981.1072.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104981.1072.1
Unique NamemRNA_M-pyrifera_M_contig104981.1072.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A6C1Z7_9PLAN (Uncharacterized protein n=3 Tax=Gimesia maris TaxID=122 RepID=A6C1Z7_9PLAN)

HSP 1 Score: 95.5 bits (236), Expect = 2.810e-20
Identity = 60/149 (40.27%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESDVADEIYVQATEVNVGFGPVPALV----GQNTNWNNLYDRGLIGPGSVISV 438
            S+R GFTLVELLV +SI  ++  MT+ +IN +LT +  RGA+R +QS + GARDRAIY +KE      P GVR +VDP+ P+   S++YI +P  D +       ++   ++ G    P  +    G+ T+WN LY RG +  G+ I +
Sbjct:   15 SRRPGFTLVELLVVISIMAILVVMTVTSINFALTSDVTRGASRQVQSYLAGARDRAIY-AKE------PRGVRFMVDPDNPSAVTSMIYI-APSPDWNQGV----IRLERIDTGSDGTPDTILHVRGKGTDWNFLYTRGQLKDGARIKI 151          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A518AE83_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AE83_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 1.920e-19
Identity = 62/145 (42.76%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESDVADEIYVQATEVNVGFGPVPALVGQNTNWNNLYDRGLIGPGSVISV 438
             +R GFTLVELLV +SI       T+ +INL+L+ +  R A+R +QS + GARDRAIY +KE      P GVR LVDPN PT+  S+VYI +P  D +     +    T  N     +  + GQ T+WN LY RG +  G+ I +
Sbjct:   17 KRRAGFTLVELLVVISIXXXXXXXTVSSINLALSSDVTRSASRQVQSYLAGARDRAIY-AKE------PRGVRFLVDPNNPTMVTSMVYI-APSPDWNQGVIRLERIDTSGNGTPDTILHVRGQGTDWNFLYTRGQLVDGARIKI 153          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A517WPU8_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WPU8_9PLAN)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-19
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIE-SPGRDESDVADEIYVQATEVNVGFGPVPALVGQNTNWNNLYDRGLIGPGSVISV 438
            S R GFTLVELLV +SI  ++  MT+ +IN +L+ +  RG +R +QS + GARDRAIY +KE      P GVR LVDPN PT   S+VYI  SP  ++  +  E    +   +     +  + G  T+W  LYDRG +  G+ I +
Sbjct:   23 SVRLGFTLVELLVVISILAILVVMTVTSINFALSSDLTRGGSRQVQSYLAGARDRAIY-AKE------PRGVRFLVDPNNPTAVTSMVYIAPSPNWNQGVIRLERIDASNPPDSIVDTILNVRGAGTDWRFLYDRGQLIDGARIKI 161          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A2E2C537_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C537_9PLAN)

HSP 1 Score: 92.8 bits (229), Expect = 3.090e-19
Identity = 64/147 (43.54%), Postives = 87/147 (59.18%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIE-SPGRDESDVADEIYVQATEVNVGFGPVPALV-GQNTNWNNLYDRGLIGPGSVISV 438
            + R GFTLVELLV +SI  ++  MT+ +IN +L+ +  RGA+R +QS + GARDRAIY +KE      P GVR L+DPN PT+  S+VYI  SP   +  +  E  + A+ V  G       V G  T+W  LY RG I  G+ I +
Sbjct:   60 ATRVGFTLVELLVVISIMAILVVMTVSSINFALSSDVTRGASRQVQSYLAGARDRAIY-AKE------PRGVRFLIDPNNPTVVTSMVYIAPSPDWIQGVIRLE-RIDASPVPDGIPDTILNVRGGGTDWRFLYTRGQIKDGARIKI 198          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A3M1UYK8_9BACT (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1UYK8_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 8.680e-19
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 1
Query:   10 RRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESDVADEIYVQATE--------VNVGFGPVPALVGQNTNWNNLYDRGLIGPGSVISV 438
            R GFTL E+LV ++IFV++  MTI A+N+S+  E++R AAR +QS IEGARDRAI+          P GVR L+D   P    S VY          V+  IYV ATE        V    G    + G    W+NLY RGL+  G+ I +
Sbjct:   36 RSGFTLTEMLVVITIFVILLAMTITAVNVSMDRERIRSAARQMQSYIEGARDRAIFAKL-------PRGVRFLIDAKNPAAGTSPVYT---------VSSMIYVGATEDWSEGEVHVFAPGGRANVIEGVGAGWHNLYRRGLLEAGNKIKL 170          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A2E7K8R1_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K8R1_9PLAN)

HSP 1 Score: 91.3 bits (225), Expect = 9.510e-19
Identity = 62/149 (41.61%), Postives = 86/149 (57.72%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESDVADEIYVQATEVNVGFGPVPALV----GQNTNWNNLYDRGLIGPGSVISV 438
             +R GFTLVELLV +SI       T+ +INL+L+ +  R A+R +QS + GARDRAIY +KE      P GVR LVDPN P +  S+VYI +P  D S     I ++  + N     +P  +    G  T+WN LY+RG +  G+ I +
Sbjct:   17 ERRAGFTLVELLVVISIXXXXXXXTVSSINLALSSDVTRSASRQVQSYLAGARDRAIY-AKE------PRGVRFLVDPNNPAMVTSMVYI-APSPDWSQ--GTISLERIDTNPVPDGIPDTILHVRGSGTDWNFLYNRGQLVDGARIKI 155          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A517PWS4_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PWS4_9PLAN)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-18
Identity = 61/148 (41.22%), Postives = 85/148 (57.43%), Query Frame = 1
Query:    1 MSKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESDVADEIYVQATEVNVGFGPVPALV--GQNTNWNNLYDRGLIGPGSVISV 438
            M +R GFTLVELLV +SI  ++  MT+ +INL+L+ +  R A+R +QS + GARDRAIY +KE      P GVR L+DPN+PTI  S+VYI S       +   I ++  +      P   L   G  T+W  LY R  +  G+ I +
Sbjct:   16 MKRRTGFTLVELLVVISILAILVVMTVSSINLALSSDVTRSASRQVQSYLAGARDRAIY-AKE------PRGVRFLIDPNDPTIVTSMVYIASS---PDWIQGVIRLERIDTTGNSTPDTILHVRGNGTDWRFLYLRKQLKDGARIKI 153          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A518IJH5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IJH5_9PLAN)

HSP 1 Score: 88.6 bits (218), Expect = 9.090e-18
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   10 RRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIE-SPGRDESDVADEIYVQATEVNVGFGPVPALVGQNTNWNNLYDRGLIGPGSVISV 438
            R GFTLVELLV +SI  ++  MT+ +IN +++ +  R A+R +QS + GARDRAIY +KE      P GVR ++DPN PT   S+VYI  SP   +  +  E   + T ++     +  + G  T+W  LY+RG I  G+ I +
Sbjct:   23 RSGFTLVELLVVISILAILVVMTVTSINFAISTDLTRSASRQVQSYLAGARDRAIY-AKE------PRGVRFILDPNNPTAVTSMVYIAPSPDWTQGVIRLERIDRITPLDGVPDTIMNVRGGGTDWRFLYERGQIKNGTRIKI 159          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A2D5GYK4_9PLAN (Uncharacterized protein n=4 Tax=Gimesia TaxID=1649453 RepID=A0A2D5GYK4_9PLAN)

HSP 1 Score: 88.6 bits (218), Expect = 9.850e-18
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIE-SPGRDESDVADEIYVQATEVNVGFGP-VPALVGQNTNWNNLYDRGLIGPGSVISV 438
            S+R GFTLVELLV +SI  ++  MT+ +IN +L+ +  R A+R +QS + GARDRAIY          P GVR ++DPN PT   S+VYI  SP   +  +  E    +        P +  + G  T+W  L+ RG+I  G+ I +
Sbjct:   61 SRRAGFTLVELLVVISIIAILIVMTVTSINFALSTDLTRSASRQVQSYLAGARDRAIYAKA-------PRGVRFMLDPNNPTAVTSMVYIAPSPYWQQGIITMERPDNSPSDGTADSPGIYYVRGDGTDWATLFTRGMIKEGARIKI 200          
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Match: A0A517VQM2_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VQM2_9PLAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.180e-17
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 1
Query:    4 SKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKIEGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIE-SPGRDESDVADEIYVQATEVNVGFGPVPALV-GQNTNWNNLYDRGLIGPGSVISV 438
            S R GFTLVELLV +SI  ++  MT+ +IN +L+ +  R A+R +QS + GARDRAIY          P GVR ++DPN PT   S+VYI  SP  ++  +  E    +    V   P    V G  T+W  LY RG+I   + I +
Sbjct:   15 STRAGFTLVELLVVISILAILVVMTVTSINFALSTDLTRSASRQVQSYLAGARDRAIYAKA-------PRGVRFILDPNNPTAVTSMVYIAPSPHWEQGIIRMERTDSSPSDGVADSPEIFYVRGDGTDWATLYLRGMIQENARIKI 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104981.1072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A6C1Z7_9PLAN2.810e-2040.27Uncharacterized protein n=3 Tax=Gimesia maris TaxI... [more]
A0A518AE83_9PLAN1.920e-1942.76Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517WPU8_9PLAN2.100e-1941.78Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2E2C537_9PLAN3.090e-1943.54Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3M1UYK8_9BACT8.680e-1941.06Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A2E7K8R1_9PLAN9.510e-1941.61Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517PWS4_9PLAN1.010e-1841.22Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A518IJH5_9PLAN9.090e-1840.28Uncharacterized protein n=2 Tax=Gimesia fumaroli T... [more]
A0A2D5GYK4_9PLAN9.850e-1838.78Uncharacterized protein n=4 Tax=Gimesia TaxID=1649... [more]
A0A517VQM2_9PLAN1.180e-1740.14Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104981contigM-pyrifera_M_contig104981:120..557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.2
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog344747.PM8797T_13498
KEGG koko:K08084
KEGG TC3.A.15.2
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.TIGRFAM prepilin-type N-terminal cleavage methylation domain
EggNOG OGs2J1CH@203682,COG4970@1,COG4970@2
COG Functional cat.NU
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02044
Exons1
Model size438
Cds size438
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.9632647-CDS-M-pyrifera_M_contig104981:119..5571622815557.9632647-CDS-M-pyrifera_M_contig104981:119..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104981 120..557 +
1692277463.0502412-CDS-M-pyrifera_M_contig104981:119..5571692277463.0502412-CDS-M-pyrifera_M_contig104981:119..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104981 120..557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104981.1072.1prot_M-pyrifera_M_contig104981.1072.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104981 120..557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104981.1072.1

>prot_M-pyrifera_M_contig104981.1072.1 ID=prot_M-pyrifera_M_contig104981.1072.1|Name=mRNA_M-pyrifera_M_contig104981.1072.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MSKRRGFTLVELLVAMSIFVVISFMTIGAINLSLTGEQVRGAARSIQSKI
EGARDRAIYNSKETSGKPRPVGVRLLVDPNEPTICRSLVYIESPGRDESD
VADEIYVQATEVNVGFGPVPALVGQNTNWNNLYDRGLIGPGSVISV
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mRNA from alignment at M-pyrifera_M_contig104981:120..557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104981.1072.1 ID=mRNA_M-pyrifera_M_contig104981.1072.1|Name=mRNA_M-pyrifera_M_contig104981.1072.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig104981:120..557+ (Macrocystis pyrifera P11B4 male)
ATGTCCAAACGTCGCGGCTTCACGCTCGTGGAATTGCTCGTGGCGATGTC GATCTTTGTGGTCATCAGCTTCATGACGATCGGGGCGATCAATCTGTCGC TCACCGGCGAGCAGGTCCGTGGAGCTGCGCGGTCAATTCAGTCCAAAATC GAAGGTGCCCGAGACCGCGCCATCTACAACTCCAAAGAAACCAGCGGTAA ACCCCGCCCCGTCGGTGTGCGTCTCCTCGTCGACCCCAACGAACCCACCA TCTGTCGCTCTTTGGTCTACATCGAATCCCCCGGACGAGACGAGTCTGAT GTCGCAGATGAAATCTATGTACAAGCAACTGAAGTTAATGTTGGATTTGG GCCCGTGCCTGCTCTAGTCGGCCAGAATACCAATTGGAACAACTTGTATG ATCGTGGCTTGATAGGTCCTGGATCGGTCATTTCAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104981:120..557+

>mRNA_M-pyrifera_M_contig104981.1072.1 ID=mRNA_M-pyrifera_M_contig104981.1072.1|Name=mRNA_M-pyrifera_M_contig104981.1072.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig104981:120..557+ (Macrocystis pyrifera P11B4 male)
ATGTCCAAACGTCGCGGCTTCACGCTCGTGGAATTGCTCGTGGCGATGTC
GATCTTTGTGGTCATCAGCTTCATGACGATCGGGGCGATCAATCTGTCGC
TCACCGGCGAGCAGGTCCGTGGAGCTGCGCGGTCAATTCAGTCCAAAATC
GAAGGTGCCCGAGACCGCGCCATCTACAACTCCAAAGAAACCAGCGGTAA
ACCCCGCCCCGTCGGTGTGCGTCTCCTCGTCGACCCCAACGAACCCACCA
TCTGTCGCTCTTTGGTCTACATCGAATCCCCCGGACGAGACGAGTCTGAT
GTCGCAGATGAAATCTATGTACAAGCAACTGAAGTTAATGTTGGATTTGG
GCCCGTGCCTGCTCTAGTCGGCCAGAATACCAATTGGAACAACTTGTATG
ATCGTGGCTTGATAGGTCCTGGATCGGTCATTTCAGTCATGTCCAAACGT
CGCGGCTTCACGCTCGTGGAATTGCTCGTGGCGATGTCGATCTTTGTGGT
CATCAGCTTCATGACGATCGGGGCGATCAATCTGTCGCTCACCGGCGAGC
AGGTCCGTGGAGCTGCGCGGTCAATTCAGTCCAAAATCGAAGGTGCCCGA
GACCGCGCCATCTACAACTCCAAAGAAACCAGCGGTAAACCCCGCCCCGT
CGGTGTGCGTCTCCTCGTCGACCCCAACGAACCCACCATCTGTCGCTCTT
TGGTCTACATCGAATCCCCCGGACGAGACGAGTCTGATGTCGCAGATGAA
ATCTATGTACAAGCAACTGAAGTTAATGTTGGATTTGGGCCCGTGCCTGC
TCTAGTCGGCCAGAATACCAATTGGAACAACTTGTATGATCGTGGCTTGA
TAGGTCCTGGATCGGTCATTTCAGTC
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