mRNA_M-pyrifera_M_contig104971.1067.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104971.1067.1
Unique NamemRNA_M-pyrifera_M_contig104971.1067.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A5A8E992_CAFRO (JmjC domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8E992_CAFRO)

HSP 1 Score: 207 bits (528), Expect = 4.310e-60
Identity = 91/133 (68.42%), Postives = 112/133 (84.21%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKNDYRAKLKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+++   QRGIHCRFG AGI+AESHYDGGRNFIS+VRGR+RYILSPPS+C N ++L +G S+RHS TDW + +DY+  L +AKALEV++EPGDSLY+P+ WFHLPISL TNIQCNTRSGSP EG K++  C F
Sbjct:  720 FILDAAAQRGIHCRFGQAGIVAESHYDGGRNFISMVRGRKRYILSPPSECPNYNLLFTGASARHSKTDWGDPSDYKQTLASAKALEVIIEPGDSLYVPSLWFHLPISLDTNIQCNTRSGSPPEGSKDIADCGF 852          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A482R830_9EURY (JmjC domain-containing protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R830_9EURY)

HSP 1 Score: 169 bits (429), Expect = 6.370e-50
Identity = 75/134 (55.97%), Postives = 101/134 (75.37%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKNDYRAKLKN-AKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V P   +GIHCR+G+ GIIAESH+D GRNFI +VRGR+RYILS P QCGNL ++ SGPS+RHS+ DW++     A + + A+ALEV+LE GD+LY+P++WFH  +SL+ N+QCN RSG+P  G   +  C F
Sbjct:   10 FMVEPAGFQGIHCRYGMPGIIAESHFDAGRNFIFMVRGRKRYILSSPQQCGNLHMMKSGPSARHSSLDWTSDAGISALMDSGAEALEVILEAGDALYVPSFWFHFIVSLSVNVQCNARSGTPPHGTAAIRECGF 143          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A7S1G2M9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2M9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 8.820e-45
Identity = 75/146 (51.37%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKNDY------RAKLKN-------AKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+  QQRG+HCRFG+ GIIAE+HYD GRNF+S+VRG +RY+L+PPS+C  L IL  GPS RHSA DWS+            ++ N       A+ ++VV+ PG+++Y+P+++FHLPISL  +IQCN+RSG P  GG  +E+C F
Sbjct: 1044 FLVDKAQQRGVHCRFGMPGIIAEAHYDAGRNFVSMVRGHKRYLLAPPSECEKLHILKQGPSIRHSAVDWSDPYHSTHGLGKEGRISNSMDPFWSARVIDVVIGPGEAMYIPSFYFHLPISLDESIQCNSRSGVPQVGGAAIEQCGF 1189          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A812QUH0_9DINO (Hif1an protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QUH0_9DINO)

HSP 1 Score: 162 bits (411), Expect = 2.680e-44
Identity = 69/133 (51.88%), Postives = 97/133 (72.93%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKNDYRAKLKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+  +QRGIHCRFG+ G++AE HYD GRNF++++RG +RYILS P +C NLD+   GPS+RH+  +W + +  +AKL  A A+E +L+ GD LY+P+ WFH  IS+T N QCNTRSG+P    +E+  C F
Sbjct:  499 FIVDGSEQRGIHCRFGMEGVMAECHYDSGRNFVALMRGMKRYILSSPDECPNLDMYMKGPSARHTKGNWGDIDYAKAKLAKASAMEAILQAGDMLYIPSGWFHHIISMTLNYQCNTRSGNPAIWQEEISSCGF 631          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A7R9ZJX9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJX9_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.130e-42
Identity = 71/135 (52.59%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSG-PSSRHSATDWSNKNDYRA-KLKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+P  +RGI+CRFG+ GI+A +HYD  RNFI +++G++RYIL+ P+QCGNL +  SG PS RHS+ DWSN ++++      AK  EVVL+ GD+LYLP  WFH  +SL  N QCN RSG   E  K L  C F
Sbjct:  120 FMVDPSDERGINCRFGMKGIVAATHYDMSRNFIFILKGQKRYILAHPNQCGNLMLHPSGHPSGRHSSIDWSNPDEWQTGNFPQAKVNEVVLQAGDALYLPTAWFHFIVSLNLNYQCNARSGITYENKKALLDCGF 254          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A7S1GA22_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GA22_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.250e-42
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 FVVN--PRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKN----DYRAKLK----NAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+  P   RGIHCRFG AGIIAESHYDG RNFI+++RG +RYIL+PP QC NL +  SGPS+RH+  DWS+ +    DY  K       A+ ++ VL  GD LY+P+++FH PISL  +IQCN RSG    G   +ERC F
Sbjct:  216 FIVDNSPGAYRGIHCRFGAAGIIAESHYDGHRNFIAMLRGHKRYILNPPDQCPNLGLWKSGPSARHTYVDWSDPDSPSRDYHKKAPPEWYTARGIDTVLNEGDVLYVPSFYFHNPISLDRSIQCNARSGVSAYGQAAVERCGF 358          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A7S1CH23_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CH23_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.170e-42
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    1 FVVN--PRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGPSSRHSATDWSNKN----DYRAKLK----NAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+  P   RGIHCRFG AGIIAESHYDG RNFI+++RG +RYIL+PP QC NL +  SGPS+RH+  DWS+ +    DY  K       A+ ++ VL  GD LY+P+++FH PISL  +IQCN RSG    G   +ERC F
Sbjct:  216 FIVDNSPGAYRGIHCRFGAAGIIAESHYDGHRNFIAMLRGHKRYILNPPDQCPNLGLWKSGPSARHTYVDWSDPDSPSRDYHKKAPPEWYTARGIDTVLNEGDVLYVPSFYFHNPISLDRSIQCNARSGVSAYGQAAVERCGF 358          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A7S2Y860_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y860_9STRA)

HSP 1 Score: 150 bits (379), Expect = 5.670e-42
Identity = 74/141 (52.48%), Postives = 102/141 (72.34%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSGP-SSRHSATDWSNKNDYRAK---LKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKEL----ERCNF 399
            F+V+P Q+RGI+CRFG+ G +A++H+D  RN+I V+ GRRRYILSPPSQC +L++   G  S+RHSA DWS  +  +A    L++A+AL+++L+PGD+LYLP  WFH  +SLTT+ QCN RSGS    G +L    E C F
Sbjct:  187 FMVDPSQERGINCRFGMVGNVADNHFDPTRNWIVVLGGRRRYILSPPSQCRHLNLHPLGHVSARHSADDWSQTSTSKAAQDHLQHAQALQILLQPGDALYLPTSWFHFIVSLTTSFQCNARSGSTQTRGSKLQAIFEECGF 327          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 155 bits (393), Expect = 1.460e-41
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILHSG-PSSRHSATDWSNK--NDYRAKLKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            F+V+P Q RGI+CRFG  GIIAE+HYDGGRNF++++RG +RYIL PP +C NL +   G P +RH+  DWS+   N++  K+KNA A +VVL  GD LY+P++WFH  +S   N QCNTRSG    G KE+  C F
Sbjct:  641 FLVDPSQNRGINCRFGARGIIAEAHYDGGRNFVTILRGAKRYILLPPEECPNLYLYPRGHPEARHAKADWSDLDLNEF-PKMKNAMAAQVVLRAGDVLYIPSYWFHYIVSTGVNAQCNTRSGLSIRGRKEIADCGF 775          
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Match: A0A6U5H2S0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A6U5H2S0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.870e-41
Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 1
Query:    1 FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQCGNLDILH--SGPSSRHSATDWSNKN-DYRAKLKNAKALEVVLEPGDSLYLPAWWFHLPISLTTNIQCNTRSGSPGEGGKELERCNF 399
            ++   RQQ+GIHCRFG+ G+IAE+H+DG RNF+ V+ G RRYI+S P+QC  L  LH    PS+RHSA DWS+ + +   K K AK  EVVL+ GD LYLP  WFH  ISLT N QCNTRSG   E  +++ +C F
Sbjct:  209 YLTEHRQQKGIHCRFGMKGVIAENHFDGSRNFVVVLGGERRYIVSEPNQCEML-ALHPKEHPSARHSAIDWSDPDLESFPKFKEAKTSEVVLQAGDVLYLPTNWFHYIISLTLNYQCNTRSGVSTETMQDIRKCGF 343          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104971.1067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E992_CAFRO4.310e-6068.42JmjC domain-containing protein n=4 Tax=Sar TaxID=2... [more]
A0A482R830_9EURY6.370e-5055.97JmjC domain-containing protein n=1 Tax=Euryarchaeo... [more]
A0A7S1G2M9_9STRA8.820e-4551.37Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A812QUH0_9DINO2.680e-4451.88Hif1an protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A7R9ZJX9_9STRA1.130e-4252.59Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S1GA22_9STRA2.250e-4253.15Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1CH23_9STRA3.170e-4253.15Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S2Y860_9STRA5.670e-4252.48Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
F2UI36_SALR51.460e-4153.68JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
A0A6U5H2S0_9STRA2.870e-4154.41Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104971contigM-pyrifera_M_contig104971:241..639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue5.5e-36
Seed eggNOG ortholog946362.XP_004991157.1
KEGG koko:K10277
Hectar predicted targeting categoryother localisation
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.6980712-CDS-M-pyrifera_M_contig104971:240..6391622815557.6980712-CDS-M-pyrifera_M_contig104971:240..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104971 241..639 -
1692277462.9020848-CDS-M-pyrifera_M_contig104971:240..6391692277462.9020848-CDS-M-pyrifera_M_contig104971:240..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104971 241..639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104971.1067.1prot_M-pyrifera_M_contig104971.1067.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104971 241..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104971.1067.1

>prot_M-pyrifera_M_contig104971.1067.1 ID=prot_M-pyrifera_M_contig104971.1067.1|Name=mRNA_M-pyrifera_M_contig104971.1067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
FVVNPRQQRGIHCRFGVAGIIAESHYDGGRNFISVVRGRRRYILSPPSQC
GNLDILHSGPSSRHSATDWSNKNDYRAKLKNAKALEVVLEPGDSLYLPAW
WFHLPISLTTNIQCNTRSGSPGEGGKELERCNF
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mRNA from alignment at M-pyrifera_M_contig104971:241..639-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104971.1067.1 ID=mRNA_M-pyrifera_M_contig104971.1067.1|Name=mRNA_M-pyrifera_M_contig104971.1067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig104971:241..639- (Macrocystis pyrifera P11B4 male)
TTCGTGGTCAACCCAAGGCAACAACGAGGAATTCACTGCCGCTTTGGTGT TGCTGGAATCATTGCAGAATCCCACTATGATGGAGGACGAAACTTTATCA GTGTTGTGCGTGGGCGACGCAGGTATATTCTCTCTCCACCTTCTCAGTGT GGAAACCTCGACATCTTGCATAGTGGACCATCGTCACGACATTCTGCCAC AGATTGGTCCAACAAGAACGACTATCGCGCAAAGCTCAAAAACGCAAAAG CTCTTGAAGTTGTCCTTGAGCCTGGGGATTCTCTCTATCTCCCTGCGTGG TGGTTTCACCTCCCAATCTCCCTCACCACCAATATCCAATGCAACACACG TTCAGGATCACCAGGAGAAGGTGGGAAAGAGTTGGAACGTTGCAACTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104971:241..639-

>mRNA_M-pyrifera_M_contig104971.1067.1 ID=mRNA_M-pyrifera_M_contig104971.1067.1|Name=mRNA_M-pyrifera_M_contig104971.1067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig104971:241..639- (Macrocystis pyrifera P11B4 male)
TTCGTGGTCAACCCAAGGCAACAACGAGGAATTCACTGCCGCTTTGGTGT
TGCTGGAATCATTGCAGAATCCCACTATGATGGAGGACGAAACTTTATCA
GTGTTGTGCGTGGGCGACGCAGGTATATTCTCTCTCCACCTTCTCAGTGT
GGAAACCTCGACATCTTGCATAGTGGACCATCGTCACGACATTCTGCCAC
AGATTGGTCCAACAAGAACGACTATCGCGCAAAGCTCAAAAACGCAAAAG
CTCTTGAAGTTGTCCTTGAGCCTGGGGATTCTCTCTATCTCCCTGCGTGG
TGGTTTCACCTCCCAATCTCCCTCACCACCAATATCCAATGCAACACACG
TTCAGGATCACCAGGAGAAGGTGGGAAAGAGTTGGAACGTTGCAACTTTT
TCGTGGTCAACCCAAGGCAACAACGAGGAATTCACTGCCGCTTTGGTGTT
GCTGGAATCATTGCAGAATCCCACTATGATGGAGGACGAAACTTTATCAG
TGTTGTGCGTGGGCGACGCAGGTATATTCTCTCTCCACCTTCTCAGTGTG
GAAACCTCGACATCTTGCATAGTGGACCATCGTCACGACATTCTGCCACA
GATTGGTCCAACAAGAACGACTATCGCGCAAAGCTCAAAAACGCAAAAGC
TCTTGAAGTTGTCCTTGAGCCTGGGGATTCTCTCTATCTCCCTGCGTGGT
GGTTTCACCTCCCAATCTCCCTCACCACCAATATCCAATGCAACACACGT
TCAGGATCACCAGGAGAAGGTGGGAAAGAGTTGGAACGTTGCAACTTT
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