mRNA_M-pyrifera_M_contig104960.1064.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104960.1064.1
Unique NamemRNA_M-pyrifera_M_contig104960.1064.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A7S1CL90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CL90_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.710e-38
Identity = 69/127 (54.33%), Postives = 93/127 (73.23%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIR-GAAPDVAIAEENVRALRRFNAKRKMRGAIQAVRGTLRLRIMLR 378
            YG E DIWS+GVI YI+LCGYPPFH   + +++R+I AGDY F  E W  IS++AKDL+ R+L VDPKKR+TA +IL H W+  GA P+  +    V+ L++FNA+RK+R A+QAVR   R ++MLR
Sbjct:  210 YGKEVDIWSLGVIFYILLCGYPPFHDENQNKLFRKIKAGDYTFDPEDWDHISEDAKDLITRILVVDPKKRMTAADILRHRWVLDGALPETNLTGTIVQ-LKKFNARRKLRAAMQAVRAVARTQVMLR 335          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: D8LP07_ECTSI (Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP07_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 6.880e-37
Identity = 62/120 (51.67%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIAE--ENVRALRRFNAKRKMRGAIQAVRGT 354
            YG   D+WS+GVI+YI+L GYPPFH   +  ++R+I AG++ FH E+W SIS+EAKDL+RR+LTVDPKKR+TA + + HPW+     D+       N+  LR FNA+RK+R AI++V  T
Sbjct:   25 YGTSVDMWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSISNEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDADLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 144          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A058ZEN5_FONAL (Calcium/calmodulin-dependent protein kinase I n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZEN5_FONAL)

HSP 1 Score: 130 bits (327), Expect = 3.730e-36
Identity = 62/125 (49.60%), Postives = 88/125 (70.40%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIR---GAAPDVAIAEENVRALRRFNAKRKMRGAIQAVRGTLRLR 366
            YG   D WS+GVI YI+LCGYPPF+  ++  +++ I+AG + FH E+W+ ISD AKDL+RR+LTVDP +R+TA+E L HPWI    G+A ++ I E     L +FNA+RK+R A++ V    RL+
Sbjct:   10 YGKSVDNWSIGVIAYILLCGYPPFYDEDQATLFQTIMAGVFDFHVEYWSHISDSAKDLIRRLLTVDPAQRLTAEEALRHPWIAQEGGSASNIDIHESFTTQLAKFNARRKLRAAMKTVAMVTRLK 134          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A7S2XV40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV40_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.300e-36
Identity = 60/117 (51.28%), Postives = 84/117 (71.79%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIA--EENVRALRRFNAKRKMRGAIQAV 345
            YG   D+WS+GVI YI+L GYPPFH  ++  ++ +I AGD+ FH E+W  +S+EAKDL+R++LTVDP KRITA E + HPW+ GA   +A    +  +R LRRFNA+RK R  ++A+
Sbjct:  204 YGLAVDMWSIGVITYILLGGYPPFHDEKQSNLFAKIRAGDFVFHPEYWDPVSEEAKDLIRKLLTVDPNKRITAAEAMQHPWVTGADETLAARNLDSQLRELRRFNARRKFRSGVKAI 320          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A835YRH8_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRH8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.850e-35
Identity = 59/117 (50.43%), Postives = 83/117 (70.94%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIA--EENVRALRRFNAKRKMRGAIQAV 345
            YG   D+WS+GVI+YI+L GYPPFH   +  ++R+I AG Y FH E+W  +S+EAKDL+ R+LTVD  KR+TA E + HPW+     D+A    E+N+  L+ FNA+RK+R AI++V
Sbjct:   22 YGTSVDMWSIGVIIYILLGGYPPFHDENQTRLFRKIRAGSYKFHSEYWGGVSNEAKDLISRLLTVDVSKRLTAAEAVVHPWLLSKDIDLAARSLEKNLEQLKLFNARRKLRAAIKSV 138          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: UPI001B887D50 (calcium/calmodulin-dependent protein kinase type IV-like isoform X2 n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B887D50)

HSP 1 Score: 132 bits (333), Expect = 4.280e-35
Identity = 59/116 (50.86%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIAEENVRALRRFNAKRKMRGAIQAVR 348
            Y    D+WS+GVI YI+LCGY PF A ++RE+Y+ ++ G Y F + +W  IS  AKDLV+R+LT+DPKKRITAK  L HPW++G A      E     ++ FNAKRK++ A +AVR
Sbjct:  196 YDKSVDLWSIGVIAYILLCGYEPFSAEDDREMYKNVIKGKYTFDEIYWDDISKNAKDLVKRLLTLDPKKRITAKSALQHPWVKGKAASSDHLESTYEKIKEFNAKRKLKTATEAVR 311          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A1E7F701_9STRA (Kinase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F701_9STRA)

HSP 1 Score: 129 bits (325), Expect = 6.380e-34
Identity = 58/117 (49.57%), Postives = 88/117 (75.21%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIA--EENVRALRRFNAKRKMRGAIQAV 345
            Y   AD+WS+GVILYI+L GYPPF    +RE++R+I  GDY FH+E+W ++S EA+ L++ +LTVDPK+R+TA++ L++PWI G A  +A    ++N+ +L++FNAKRK + A+  V
Sbjct:  211 YDQRADMWSVGVILYILLGGYPPFIENTQRELFRKIKKGDYEFHEEYWGTVSTEARTLIKSLLTVDPKERLTAQQALENPWIHGDADSLAKKGLDKNLASLKKFNAKRKFKAAVSTV 327          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A6H5K8A8_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 8.940e-34
Identity = 61/120 (50.83%), Postives = 84/120 (70.00%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIAE--ENVRALRRFNAKRKMRGAIQAVRGT 354
            YG   D+WS+GVI+YI+L GYPPFH   +  ++R+I AG++ FH E+W S S EAKDL+RR+LTVDPKKR+TA + + HPW+     D+       N+  LR FNA+RK+R AI++V  T
Sbjct:  235 YGTSVDMWSIGVIVYILLGGYPPFHDENQTRLFRKIKAGNFKFHPEYWQSTSSEAKDLIRRLLTVDPKKRLTAAQAVTHPWLLSKDDDLLKHNLGVNLEQLRLFNARRKLRAAIKSVLAT 354          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: L8H5H0_ACACA (Camk2b protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5H0_ACACA)

HSP 1 Score: 129 bits (324), Expect = 9.140e-34
Identity = 62/115 (53.91%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRG-AAPDVAIAEENVRALRRFNAKRKMRGAIQA 342
            YG E D+W++GV++YI+LCGYPPF+A ++ E++ QILAGD+ F    W +IS EAKDL+R+ L VDP KRI A E L HPW++G AAPD  + +  +  L++FNAKRK + AI A
Sbjct:  201 YGLEVDMWAVGVVMYILLCGYPPFYAEDDDEVFDQILAGDFEFPAPLWDTISAEAKDLIRKCLIVDPAKRIKAAEALQHPWVKGSAAPDDHL-QGTLSELKKFNAKRKWKHAILA 314          
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Match: A0A8B6F0Y2_MYTGA (Calcium/calmodulin-dependent protein kinase IV n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6F0Y2_MYTGA)

HSP 1 Score: 129 bits (323), Expect = 1.020e-33
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 1
Query:    1 YGHEADIWSMGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLVRRMLTVDPKKRITAKEILDHPWIRGAAPDVAIAEENVRALRRFNAKRKMRGAIQA 342
            Y    DIWS GVI YI+LCGY PF+   ERE+Y++IL GDY+F   FW SIS  AKDL+ +ML +DPKKRITA + L HPW++G+A       E    ++ FNA RKMR  + A
Sbjct:  195 YTPAVDIWSCGVITYILLCGYEPFYEESEREVYKRILKGDYHFDSPFWDSISWNAKDLISKMLQLDPKKRITADQALQHPWVKGSAAKNEHMAEAQNKIKEFNAARKMRATMDA 308          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104960.1064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CL90_9STRA1.710e-3854.33Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D8LP07_ECTSI6.880e-3751.67Possible CDPK n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A058ZEN5_FONAL3.730e-3649.60Calcium/calmodulin-dependent protein kinase I n=1 ... [more]
A0A7S2XV40_9STRA7.300e-3651.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YRH8_9STRA2.850e-3550.43Kinase-like domain-containing protein n=1 Tax=Trib... [more]
UPI001B887D504.280e-3550.86calcium/calmodulin-dependent protein kinase type I... [more]
A0A1E7F701_9STRA6.380e-3449.57Kinase domain-containing protein n=1 Tax=Fragilari... [more]
A0A6H5K8A8_9PHAE8.940e-3450.83Protein kinase domain-containing protein n=1 Tax=E... [more]
L8H5H0_ACACA9.140e-3453.91Camk2b protein n=1 Tax=Acanthamoeba castellanii st... [more]
A0A8B6F0Y2_MYTGA1.020e-3352.63Calcium/calmodulin-dependent protein kinase IV n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104960contigM-pyrifera_M_contig104960:98..475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog691883.XP_009492571.1
KEGG koko:K06641,ko:K08794
KEGG Pathwayko04110,ko04111,ko04115,ko04218,ko04921,ko04925,ko05166,map04110,map04111,map04115,map04218,map04921,map04925,map05166
KEGG ModuleM00691
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1,2.7.11.17
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03400
Exons1
Model size378
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.41505-CDS-M-pyrifera_M_contig104960:97..4481622815557.41505-CDS-M-pyrifera_M_contig104960:97..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104960 98..448 -
1692277462.7333398-CDS-M-pyrifera_M_contig104960:97..4481692277462.7333398-CDS-M-pyrifera_M_contig104960:97..448Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104960 98..448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.4257438-UTR-M-pyrifera_M_contig104960:448..4751622815557.4257438-UTR-M-pyrifera_M_contig104960:448..475Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104960 449..475 -
1692277462.7539608-UTR-M-pyrifera_M_contig104960:448..4751692277462.7539608-UTR-M-pyrifera_M_contig104960:448..475Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104960 449..475 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104960.1064.1prot_M-pyrifera_M_contig104960.1064.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104960 98..448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104960.1064.1

>prot_M-pyrifera_M_contig104960.1064.1 ID=prot_M-pyrifera_M_contig104960.1064.1|Name=mRNA_M-pyrifera_M_contig104960.1064.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=117bp
MGVILYIMLCGYPPFHAAEEREIYRQILAGDYYFHDEFWTSISDEAKDLV
RRMLTVDPKKRITAKEILDHPWIRGAAPDVAIAEENVRALRRFNAKRKMR
GAIQAVRGTLRLRIMLR
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mRNA from alignment at M-pyrifera_M_contig104960:98..475-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104960.1064.1 ID=mRNA_M-pyrifera_M_contig104960.1064.1|Name=mRNA_M-pyrifera_M_contig104960.1064.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig104960:98..475- (Macrocystis pyrifera P11B4 male)
TACGGCCACGAGGCGGACATTTGGAGCATGGGTGTGATTTTGTACATTAT GCTGTGCGGCTACCCGCCGTTCCACGCGGCGGAGGAGCGGGAAATCTACC GCCAGATCCTCGCGGGCGACTACTACTTCCACGACGAATTCTGGACGTCG ATTTCCGACGAAGCCAAGGATTTGGTCCGTCGCATGCTCACGGTCGACCC CAAAAAGCGCATCACGGCCAAGGAAATCCTCGATCACCCCTGGATCCGAG GCGCAGCGCCCGATGTGGCCATTGCAGAGGAAAACGTGCGCGCCCTCCGT CGATTCAACGCCAAACGCAAAATGCGGGGCGCCATCCAGGCCGTCAGAGG CACGCTCCGCCTCAGAATCATGCTCCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104960:98..475-

>mRNA_M-pyrifera_M_contig104960.1064.1 ID=mRNA_M-pyrifera_M_contig104960.1064.1|Name=mRNA_M-pyrifera_M_contig104960.1064.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=702bp|location=Sequence derived from alignment at M-pyrifera_M_contig104960:98..475- (Macrocystis pyrifera P11B4 male)
ATGGGTGTGATTTTGTACATTATGCTGTGCGGCTACCCGCCGTTCCACGC
GGCGGAGGAGCGGGAAATCTACCGCCAGATCCTCGCGGGCGACTACTACT
TCCACGACGAATTCTGGACGTCGATTTCCGACGAAGCCAAGGATTTGGTC
CGTCGCATGCTCACGGTCGACCCCAAAAAGCGCATCACGGCCAAGGAAAT
CCTCGATCACCCCTGGATCCGAGGCGCAGCGCCCGATGTGGCCATTGCAG
AGGAAAACGTGCGCGCCCTCCGTCGATTCAACGCCAAACGCAAAATGCGG
GGCGCCATCCAGGCCGTCAGAGGCACGCTCCGCCTCAGAATCATGCTCCG
CATGGGTGTGATTTTGTACATTATGCTGTGCGGCTACCCGCCGTTCCACG
CGGCGGAGGAGCGGGAAATCTACCGCCAGATCCTCGCGGGCGACTACTAC
TTCCACGACGAATTCTGGACGTCGATTTCCGACGAAGCCAAGGATTTGGT
CCGTCGCATGCTCACGGTCGACCCCAAAAAGCGCATCACGGCCAAGGAAA
TCCTCGATCACCCCTGGATCCGAGGCGCAGCGCCCGATGTGGCCATTGCA
GAGGAAAACGTGCGCGCCCTCCGTCGATTCAACGCCAAACGCAAAATGCG
GGGCGCCATCCAGGCCGTCAGAGGCACGCTCCGCCTCAGAATCATGCTCC
GC
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