mRNA_M-pyrifera_M_contig104954.1063.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104954.1063.1
Unique NamemRNA_M-pyrifera_M_contig104954.1063.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: C1MP01_MICPC (Filamin like protein n=5 Tax=Micromonas pusilla TaxID=38833 RepID=C1MP01_MICPC)

HSP 1 Score: 72.0 bits (175), Expect = 1.730e-11
Identity = 50/175 (28.57%), Postives = 82/175 (46.86%), Query Frame = 1
Query:    1 RIVAPSSLTPPKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSL---QVFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRVTTFLGATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTLPNCGAAQGVVLPPNIELSYAWS 516
            R++APSS+TPP   +S P  +G CD  I  D SGS+GGGGRKL++++ +      A V                    ++ + ++ +  G  Y + ++VT +LG      S   V H F   + P P   + GG  + + R   L++ A  +LP+   A     P    ++Y W+
Sbjct: 3494 RLLAPSSITPPVASISAPSAVGPCDN-IAFDVSGSSGGGGRKLRYEFGIVANDATADVGVVVAALXXXXXXXXXXXXDVVTLSSNVMTAGVSYNLTLQVTDYLG------SAHKVHHGFVKRAYPTPIARVLGGEDRTIRRGHALSLEADVSLPDVSCAS---FPAVANVTYEWT 3658          
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: C1EH03_MICCC (Filamin like protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EH03_MICCC)

HSP 1 Score: 65.1 bits (157), Expect = 4.330e-9
Identity = 56/178 (31.46%), Postives = 84/178 (47.19%), Query Frame = 1
Query:   10 APSSLTPPKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQVFAGVYNETRLTSLQSFLVSSTNFA-------LIRIPASFLDVGAQYWIDVRVTTFLGATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTLPN--CGAAQGVVLPPNIELSYAWS 516
            AP+  TPP+  LS P+ IG CD  ++LDAS S GGGGR ++F +S  V A   + + +       VS+   A       +I + ++ L+ G  Y   VR T F G T++ S+          S  P+P   +S GR    TR+  + +     LP+  C A     +   I+  Y WS
Sbjct: 2930 APAVPTPPEARLSVPDKIGPCDG-VVLDASQSRGGGGRPMEFRYS--VVATATDGSAVADALGAAVSAAAAARGGVTNPVIVLESAHLEPGVSYTFTVRATDFTGGTSTASAT------VTKSVYPMPISKISSGRTYTATRSHAVTIEGDVQLPSVACDAIAATEVGDGID--YRWS 3096          
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: A0A7D9L656_PARCT (REJ domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L656_PARCT)

HSP 1 Score: 64.3 bits (155), Expect = 7.360e-9
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 1
Query:    4 IVAPSSLTPPKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQVFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRVTTFLGATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTLPNCGAAQGVVLPPNIELSYAWS 516
            I+ P +   P  ++ GP  I  C   + LD S S+GGGGR L++ WSL+ +  V NE     + + L ++ N A + I  + +  G  Y   + V+ F+ + A  +++S        ++ PLP+V L G  Q +    +   VTA     +C   +         LSY+WS
Sbjct:  583 ILPPGNPVKPVPVIFGPTQISSCG-HLTLDGSQSSGGGGRNLEYGWSLEGW--VDNE-----ITAVLNAAVNNARVFINGTLMSAGTTYEFKLAVSNFISSQAVATNIS-----VTKATDPLPEVTLEGPLQGKAMAGKAFYVTATAKAASCSTEKA--------LSYSWS 732          
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: F0YIV2_AURAN (REJ domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIV2_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.710e-8
Identity = 56/173 (32.37%), Postives = 81/173 (46.82%), Query Frame = 1
Query:    4 IVAPSSLTPPKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQVFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRV--TTFLGATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTLPNCGAAQGVVLPPNIELSYAWS 516
            + AP     P+V+L  P + G C  ++ LDAS +AGGGGR L F WS             T            A + + A+ L   A   +DV V  T FLG T++ ++        RV    +P V +SGG ++ L R++PL V A  +   C AA G+    +  L YAW+
Sbjct: 1853 LAAPDPAVAPRVVLVAPLEAGSCG-DLELDASQTAGGGGRPLAFAWSA------------TGALGAAXXXXXGATLVVAAADLAAAAGTTVDVEVAATNFLGETSAATAS------VRVRGEAIPTVAISGGARRELRRSEPLEVFA--SAEACAAA-GL---DSAALDYAWA 2000          
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: A0A7S0ESY2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ESY2_9CRYP)

HSP 1 Score: 58.9 bits (141), Expect = 5.770e-7
Identity = 44/143 (30.77%), Postives = 68/143 (47.55%), Query Frame = 1
Query:   31 PKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQVFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRVTTFLGATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTLPNC 459
            P +++   +  G+C+ +++LDAS S GG GRK+ F W ++   G+  E  +TS   +L    + A   +  S L  G  Y   +R+T FL         S       VS  PLPKV + G   + +TR +  +V     LP C
Sbjct: 1834 PTIVVRSAKMYGMCE-DVVLDASASYGGAGRKMTFLWGVRP--GIPKEEAVTS---YLTQIGSVANCTVANSLLSPGTSYTFVLRITNFL------EQFSEQEIPVVVSQYPLPKVYIIGSSIRSVTREKGFSVEGYSALPLC 1964          
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Match: A0A6S7HF03_PARCT (Receptor for egg jelly (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HF03_PARCT)

HSP 1 Score: 57.4 bits (137), Expect = 1.810e-6
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 1
Query:   52 PEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQVFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRVTTFLGATASFSSLSGVGHLFRVSSA--PLPKVILSGGRQQRLTRAQPLAVTAIGTLPNCGAAQGVVLPPNIELSYAWS 516
            P  I  C   + LD S S+GGGGR L++ WSL+   G  N+     + + L ++ N A + I  S +  G+ Y   + V  FL +TA       + H   V+ A  PLP+V ++G R+ ++       VTA     +C + +         L++AWS
Sbjct:    1 PAQISSCG-HLTLDGSQSSGGGGRNLEYGWSLE---GQGND----EITAVLNAAINEARVFINGSLMTSGSTYTFKLTVKNFLYSTA-------MDHSLTVTKARDPLPEVTVNGPREGKVFGMNAFYVTAKAKAASCSSTKA--------LTFAWS 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104954.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
C1MP01_MICPC1.730e-1128.57Filamin like protein n=5 Tax=Micromonas pusilla Ta... [more]
C1EH03_MICCC4.330e-931.46Filamin like protein n=1 Tax=Micromonas commoda (s... [more]
A0A7D9L656_PARCT7.360e-928.65REJ domain-containing protein (Fragment) n=1 Tax=P... [more]
F0YIV2_AURAN2.710e-832.37REJ domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S0ESY2_9CRYP5.770e-730.77Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A6S7HF03_PARCT1.810e-629.94Receptor for egg jelly (Fragment) n=1 Tax=Paramuri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104954contigM-pyrifera_M_contig104954:7..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog4792.ETI39369
Hectar predicted targeting categoryother localisation
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size516
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.3833416-CDS-M-pyrifera_M_contig104954:6..5221622815557.3833416-CDS-M-pyrifera_M_contig104954:6..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104954 7..522 +
1692277462.7192638-CDS-M-pyrifera_M_contig104954:6..5221692277462.7192638-CDS-M-pyrifera_M_contig104954:6..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104954 7..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104954.1063.1prot_M-pyrifera_M_contig104954.1063.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104954 7..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104954.1063.1

>prot_M-pyrifera_M_contig104954.1063.1 ID=prot_M-pyrifera_M_contig104954.1063.1|Name=mRNA_M-pyrifera_M_contig104954.1063.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
RIVAPSSLTPPKVLLSGPEDIGVCDTEILLDASGSAGGGGRKLQFDWSLQ
VFAGVYNETRLTSLQSFLVSSTNFALIRIPASFLDVGAQYWIDVRVTTFL
GATASFSSLSGVGHLFRVSSAPLPKVILSGGRQQRLTRAQPLAVTAIGTL
PNCGAAQGVVLPPNIELSYAWS
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mRNA from alignment at M-pyrifera_M_contig104954:7..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104954.1063.1 ID=mRNA_M-pyrifera_M_contig104954.1063.1|Name=mRNA_M-pyrifera_M_contig104954.1063.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig104954:7..522+ (Macrocystis pyrifera P11B4 male)
CGCATTGTGGCCCCCTCGTCCTTGACCCCTCCTAAGGTTTTGCTTTCGGG ACCTGAAGACATTGGTGTATGTGATACTGAGATTCTCCTTGATGCTTCCG GAAGTGCAGGTGGCGGTGGGAGAAAACTACAGTTTGACTGGTCATTGCAA GTATTTGCAGGAGTGTACAACGAGACTCGGCTCACGTCCCTGCAATCTTT CCTAGTCTCGTCCACCAACTTTGCATTGATTCGCATTCCAGCATCGTTCC TCGATGTTGGAGCGCAGTATTGGATTGACGTCCGCGTAACAACATTCCTC GGAGCGACTGCTTCGTTTTCTTCTCTCTCTGGAGTCGGACACCTCTTCCG TGTCTCCTCCGCTCCGCTACCAAAGGTGATTCTGAGTGGAGGACGACAGC AGCGTCTTACGCGAGCGCAGCCTCTTGCCGTTACGGCAATCGGCACTCTG CCAAACTGTGGTGCAGCACAAGGAGTTGTTCTTCCGCCGAACATTGAGCT GTCATACGCATGGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104954:7..522+

>mRNA_M-pyrifera_M_contig104954.1063.1 ID=mRNA_M-pyrifera_M_contig104954.1063.1|Name=mRNA_M-pyrifera_M_contig104954.1063.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig104954:7..522+ (Macrocystis pyrifera P11B4 male)
CGCATTGTGGCCCCCTCGTCCTTGACCCCTCCTAAGGTTTTGCTTTCGGG
ACCTGAAGACATTGGTGTATGTGATACTGAGATTCTCCTTGATGCTTCCG
GAAGTGCAGGTGGCGGTGGGAGAAAACTACAGTTTGACTGGTCATTGCAA
GTATTTGCAGGAGTGTACAACGAGACTCGGCTCACGTCCCTGCAATCTTT
CCTAGTCTCGTCCACCAACTTTGCATTGATTCGCATTCCAGCATCGTTCC
TCGATGTTGGAGCGCAGTATTGGATTGACGTCCGCGTAACAACATTCCTC
GGAGCGACTGCTTCGTTTTCTTCTCTCTCTGGAGTCGGACACCTCTTCCG
TGTCTCCTCCGCTCCGCTACCAAAGGTGATTCTGAGTGGAGGACGACAGC
AGCGTCTTACGCGAGCGCAGCCTCTTGCCGTTACGGCAATCGGCACTCTG
CCAAACTGTGGTGCAGCACAAGGAGTTGTTCTTCCGCCGAACATTGAGCT
GTCATACGCATGGAGCCGCATTGTGGCCCCCTCGTCCTTGACCCCTCCTA
AGGTTTTGCTTTCGGGACCTGAAGACATTGGTGTATGTGATACTGAGATT
CTCCTTGATGCTTCCGGAAGTGCAGGTGGCGGTGGGAGAAAACTACAGTT
TGACTGGTCATTGCAAGTATTTGCAGGAGTGTACAACGAGACTCGGCTCA
CGTCCCTGCAATCTTTCCTAGTCTCGTCCACCAACTTTGCATTGATTCGC
ATTCCAGCATCGTTCCTCGATGTTGGAGCGCAGTATTGGATTGACGTCCG
CGTAACAACATTCCTCGGAGCGACTGCTTCGTTTTCTTCTCTCTCTGGAG
TCGGACACCTCTTCCGTGTCTCCTCCGCTCCGCTACCAAAGGTGATTCTG
AGTGGAGGACGACAGCAGCGTCTTACGCGAGCGCAGCCTCTTGCCGTTAC
GGCAATCGGCACTCTGCCAAACTGTGGTGCAGCACAAGGAGTTGTTCTTC
CGCCGAACATTGAGCTGTCATACGCATGGAGC
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