mRNA_M-pyrifera_M_contig10495.1061.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10495.1061.1
Unique NamemRNA_M-pyrifera_M_contig10495.1061.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10495.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10495contigM-pyrifera_M_contig10495:5649..9939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1296
Cds size1296
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10495.1061.1prot_M-pyrifera_M_contig10495.1061.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10495 5649..9939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.2769623-CDS-M-pyrifera_M_contig10495:5648..57451622815557.2769623-CDS-M-pyrifera_M_contig10495:5648..5745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 5649..5745 -
1692277462.6635256-CDS-M-pyrifera_M_contig10495:5648..57451692277462.6635256-CDS-M-pyrifera_M_contig10495:5648..5745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 5649..5745 -
1622815557.289816-CDS-M-pyrifera_M_contig10495:6633..70821622815557.289816-CDS-M-pyrifera_M_contig10495:6633..7082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 6634..7082 -
1692277462.6725745-CDS-M-pyrifera_M_contig10495:6633..70821692277462.6725745-CDS-M-pyrifera_M_contig10495:6633..7082Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 6634..7082 -
1622815557.301603-CDS-M-pyrifera_M_contig10495:8365..85821622815557.301603-CDS-M-pyrifera_M_contig10495:8365..8582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 8366..8582 -
1692277462.6814578-CDS-M-pyrifera_M_contig10495:8365..85821692277462.6814578-CDS-M-pyrifera_M_contig10495:8365..8582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 8366..8582 -
1622815557.3155184-CDS-M-pyrifera_M_contig10495:9406..99391622815557.3155184-CDS-M-pyrifera_M_contig10495:9406..9939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 9407..9939 -
1692277462.6904538-CDS-M-pyrifera_M_contig10495:9406..99391692277462.6904538-CDS-M-pyrifera_M_contig10495:9406..9939Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10495 9407..9939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10495.1061.1

>prot_M-pyrifera_M_contig10495.1061.1 ID=prot_M-pyrifera_M_contig10495.1061.1|Name=mRNA_M-pyrifera_M_contig10495.1061.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=432bp
QSTLRAALDSKADRADLSAIESSAASLLAASRQRAAADAATVAATAADLR
QDLAATVAAATAEASAGFNSRADALDVAVAGLAAAVEGAREGCRSAREKN
RRGAVKRLERVEAGLAAVAAVATAAAEAAASVETATAAAAKEAKAAEAKA
AAAAAAAAVANREAEVEAEETADKTTANQSGGDAVCSTSSSSTARARASA
KSAAAVAEEVKYLAKRVAELEPSQQTAAVAVTTAAAAAAAAAAERLVEQK
RAIGAPGMVVSERQRVDAVVGEGAVAATVQRDGAARDRGRIIGGISCGGG
GKRGGEGSEGGGGGEWREGRGEGGWGRGGEGRWKKGRGGGRRLESERGET
ERKGGGGGGGRRSQGGRGGRGGGGGGGGSGGEEGGGQRDEGERGRGGRRG
RRRPKTSGGGAGGRARGGERVEIVDGGAGGRR
back to top

mRNA from alignment at M-pyrifera_M_contig10495:5649..9939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10495.1061.1 ID=mRNA_M-pyrifera_M_contig10495.1061.1|Name=mRNA_M-pyrifera_M_contig10495.1061.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4291bp|location=Sequence derived from alignment at M-pyrifera_M_contig10495:5649..9939- (Macrocystis pyrifera P11B4 male)
CAGTCGACGCTTCGCGCCGCTCTAGATTCCAAAGCAGACCGCGCCGACCT
GTCCGCAATCGAAAGCTCCGCGGCCTCTCTCCTCGCCGCCTCCCGCCAGC
GCGCCGCAGCCGACGCCGCTACCGTCGCCGCCACCGCCGCCGACCTCAGA
CAAGACCTCGCCGCGACTGTGGCGGCTGCTACGGCCGAGGCCTCCGCAGG
CTTTAACTCCCGAGCGGATGCCCTCGACGTAGCTGTGGCGGGGCTAGCGG
CGGCGGTCGAGGGAGCGCGGGAGGGCTGCCGGTCGGCGCGAGAGAAGAAC
CGGAGGGGTGCCGTAAAGCGACTGGAGAGGGTCGAGGCCGGACTGGCGGC
AGTGGCAGCGGTGGCGACGGCAGCGGCGGAGGCAGCGGCTTCTGTGGAGA
CAGCGACGGCGGCGGCGGCGAAGGAGGCGAAGGCGGCGGAGGCAAAGGCA
GCGGCGGCGGCGGCGGCTGCTGCAGTTGCGAATAGAGAAGCGGAAGTGGA
AGCCGAGGAGACAGCCGACAAGACGACGGCTAAGTCTACTACGAGCGCCA
CGGAACGGCGCCGCGGGAGAAGAAAGAGGTGAGGAGCACGGTCTAGATAA
ATTAGGGATTCTCCCTCTTTCTTTCTTCTCTTTTCCTCTCTCGTTCGCTC
TCTCGCTCTCTCTCTCTTTCTCTCTCTTTTTCTCTCTTTTTTTCTCTTCC
TTTCTCTCTCTTTCTATCTCTCTGCCTCCGTCGCTCTCTTCCTCTTCCTC
TCTCTTTCTCTCTCTTTCTCTTTCTTGCTCTCTCTATCTACCTCCCTCGC
TCCCTTTCTCTCTCTTGTTCGCTACTTCTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTTCTCTCTCTCTTCCCCTGTCTCTGTCCCTCATGGAATCCGA
TTTCCCCTCCTCGACCACGTCGTGCGGTGCTTTCAAGCATTTTTGACTCG
CCCCCCAGTCCCCACCTCCCCCCCTTACTCCCACTATTTTCATCCCATCA
CCCGTCTGCCCCCAATCCCCCTTATCCCCCCCCCACCCCCCTCCCTTTTC
GCGCCTCCCGCAATCTCCACCGTCATCATGTTGCCGTTTTCGCGTTCTCT
TCCGCGTTTGCTTCCCACTTCCACCGCCCCAATCCGCATCACGATCCGAT
TCGATTGGATTCGATTGGATTCGGTTCGATATCGACTCGGTGTACAACCG
GTGTTCGATTCGGTGTTGATGTCGCTTCGATTCGATTCGGTTCAATTCGG
TTCAATTCGGTTCGGCTCTGTACAATTGAATTCGATCGCTTCGGTCCGCT
TCGGTTCGCTTCGGTTCGGTGTAATGCGATAAAAACGAGAAGGGAGGACA
CTGCGAGTCAGAGTGGTGGTGATGCTGTTTGTAGTACTAGTAGTAGCAGC
ACGGCGAGGGCTAGGGCTAGCGCCAAGTCTGCCGCTGCTGTCGCTGAGGA
GGTGAAGTACCTCGCCAAGCGCGTGGCCGAGTTAGAGCCCTCTCAGCAGA
CGGCGGCAGTGGCGGTGACGACGGCGGCGGCGGCAGCGGCGGCGGCGGCG
GCAGAACGACTCGTAGAGCAGAAGGTGAGAGAAAAGCTAGTTTAGAGATG
AAGCACCTGTTGGGTGGCGCGTATTACGATAATTCAAGATTTTGTTACTG
TATCCCAGACCATGTGCTTGAACGTAGAGTGCTTTACACACGTAGGATAT
TGTTTTTCAAGGCAAGTGGTGCAAGGCTCTATATGTTTGTACATCGCGTG
GAAGGAAAAAGGGAAGGAAAAGGAAGCGCATGGGTTTTCTTGCGAGGTTG
GATATGGTTTAGGGTTTTCGCGAGGCACCCCTTGAAAAGCCTGGGGGCAT
GGGAAAGGGGCGGGGGGGGGGGAGGCTGCCGCTTCGCGGCTACGCGTGGC
CTGAGTGAAGATGTCATTTGTGTTTCACACGGGAGGGGGGAAAAGCCCAA
CGATGAGGCGTGAAGCAAGAAATTGGTGCGATTGTAAAGAGGTGGGGGGG
GGTCTGCTCGCCTCCGCCGATCGCTGCCCCATCCGCCCACTTTCGTTCTT
CGACCTAAATGTTGGGTCGTATCATGTGTCCCGCTCGTGCGCAAGTGCGT
GCAAGTAGAAACAATCCCCTCAAGCCCCCTTTCCCCGTCCTTGTGTCATT
TGGGTGAACGACCTCTCGCTCATGATTCCCCGGTCGCTTTGAATTTGGAC
TTCCTTTATGATCCGGTGTCGATTTCGATTTTCGTTGACATTCGATTCCA
AGTTGTCTCTTCTTCATCGATTTACGATTCCGGTTAGGTTTCCATTTTGC
ATTCGACTTGCGTGTTTCATGTCACGGTCAATTTCGATTTTTTTCAACCG
GTTTCTATTTCCGTGTCCGTTTCTTTCGCATCCGATCTCACATTCTGGGA
ACAGGCGTCGGAAGCGGCCAGAGAGAGGGCGGCGTGCACCGCGGCACTCG
CCGAACGTCTGTCGGCATTCGAGGACGGGGTTGCTCGGCAACTCTCAGAG
ATGTCCCACGCCCTGACCACAGCTCGAGCGGCGGCAACAGTGACAGCTAC
GGCAACTTCAAGTGCGGTAGCGGCTGCAGTGGAAGCGGCGGCGGCAGCGG
CGGCAGGAGATGGCAAACGACAAAAAGAGGACGGTCGCGCCCGACGAAAC
ATGCAAGACAAAGAAAACAGGCGACACGGAGAAGACGGGCAGGACCCAAG
ACATAGACAAGACAGAGAAGGCCGACGCACATGCAGACTGGGCAATCGGG
ACTCCGCTCCGCCGGGCTTGGTGCGTGCTGGTCGTGAGGGCGGCCCAGGG
GCCGGCGAGGGGATTTGGATGCGGGTTCGGGGCGGGTCCGAGGAGGAAGA
CCCAGAGAGAGCGATAGGGGCGCCGGGGATGGTTGTGTCGGAGAGGCAGA
GGGTAGACGCGGTTGTAGGGGAGGGGGCGGTGGCCGCGACGGTGCAGCGT
GACGGTGCAGCAAGGGATCGGGGTAGAATTATAGGGGGAATAAGCTGTGG
GGGGGGAGGAAAGCGAGGAGGTGAAGGAAGTGAGGGAGGAGGAGGAGGGG
AGTGGAGAGAAGGGCGAGGAGAGGGAGGGTGGGGACGAGGAGGAGAAGGG
AGGTGGAAAAAAGGGCGAGGAGGAGGAAGAAGGTTGGAGAGCGAGAGGGG
AGAGACAGAGAGAAAAGGAGGAGGAGGAGGAGGAGGGAGGAGGAGCCAGG
GAGGCAGAGGAGGAAGAGGAGGAGGAGGAGGTGGGGGAGGAAGTGGGGGA
GAAGAAGGAGGAGGGCAACGAGACGAGGGCGAAAGAGGACGAGGAGGCCG
GAGGGGGTGGAGCGGCTGTCACCGAGACTCGGAGCGATCCCTATCCTGGT
CTGTCAATGCGGGCGATGAAGGCGTCCCCCTGGGGCCGGACAACGAAGGG
GTGGCTCCTTGGGAAAACGCAACACGGGGGTACGTGGACGACTCGACCAC
GGATGACCGAGATGCTGGGGTGGATGCGGGTTTATCCCCGACGGGCGCGT
GCGAACCAGACCCCTCTCGACCCCGTCCGACTCCACGGCACATCCACTCC
AAAATGGGTTTGGGGGAAGGCTGGCGGGAAGATCCATTTGCGGCCGAGGG
TCGAGACGGTGCTCTGGGCGAAACGAAGAATGGAACGAGTAGCGAGACAA
TGAGCGGGACGAGAAACGGGACAGGGAACAAGGCGATGAACGGCTTAAGG
AATGGGACGGAGAAAGGGACAAAGAGCGGGGCGGGGAGCGGGACGAGAAG
CAAGTCGGGGAAGCGGGTGGGGAGCGCGAGAAGGAAAGGCGAGGGGAGGG
GGGTGAGAAGCGGAGAGAGGGATGGGGCGAATGCTACGGGGACGACGAAG
AGAGAGGTGAAGAACAGGAGGGAACGGAGTTCAACCGAGGGATCAGCGAT
CCCGGAGAAGATCCGACCTTTCCTTGACTGTCCGTCAGATGGTTCTTGGG
TGAGACTCGTCGAAAGGGTTGAACGTGGTCGTGGTGGCGTTGTCGGTGTC
GATACCGGTGGTGTTCTTGGTGTGTTTGGTGGTGTTCTTAATACCGCTGG
TGCTGCAGATGGTAGCGGTGGTGGCGGTGACAGTGGCGGAGGTGGAGGTG
ATCGCAGAGGCAGAAAAAAGGGGGGAGACAGAGGAATAGCATCTGCGCTC
GACAACGCGGAGAGAGAAAAAATATCAGCCGCCCCGCAGAGGAGTAGGCG
ACGTCCAAAAACATCAGGGGGAGGGGCCGGGGGGAGGGCGAGGGGGGGAG
AAAGAGTGGAAATAGTAGATGGGGGGGCAGGCGGACGTCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10495:5649..9939-

>mRNA_M-pyrifera_M_contig10495.1061.1 ID=mRNA_M-pyrifera_M_contig10495.1061.1|Name=mRNA_M-pyrifera_M_contig10495.1061.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2592bp|location=Sequence derived from alignment at M-pyrifera_M_contig10495:5649..9939- (Macrocystis pyrifera P11B4 male)
CAGTCGACGCTTCGCGCCGCTCTAGATTCCAAAGCAGACCGCGCCGACCT
GTCCGCAATCGAAAGCTCCGCGGCCTCTCTCCTCGCCGCCTCCCGCCAGC
GCGCCGCAGCCGACGCCGCTACCGTCGCCGCCACCGCCGCCGACCTCAGA
CAAGACCTCGCCGCGACTGTGGCGGCTGCTACGGCCGAGGCCTCCGCAGG
CTTTAACTCCCGAGCGGATGCCCTCGACGTAGCTGTGGCGGGGCTAGCGG
CGGCGGTCGAGGGAGCGCGGGAGGGCTGCCGGTCGGCGCGAGAGAAGAAC
CGGAGGGGTGCCGTAAAGCGACTGGAGAGGGTCGAGGCCGGACTGGCGGC
AGTGGCAGCGGTGGCGACGGCAGCGGCGGAGGCAGCGGCTTCTGTGGAGA
CAGCGACGGCGGCGGCGGCGAAGGAGGCGAAGGCGGCGGAGGCAAAGGCA
GCGGCGGCGGCGGCGGCTGCTGCAGTTGCGAATAGAGAAGCGGAAGTGGA
AGCCGAGGAGACAGCCGACAAGACGACGGCTAACAGTCGACGCTTCGCGC
CGCTCTAGATTCCAAAGCAGACCGCGCCGACCTGTCCGCAATCGAAAGCT
CCGCGGCCTCTCTCCTCGCCGCCTCCCGCCAGCGCGCCGCAGCCGACGCC
GCTACCGTCGCCGCCACCGCCGCCGACCTCAGACAAGACCTCGCCGCGAC
TGTGGCGGCTGCTACGGCCGAGGCCTCCGCAGGCTTTAACTCCCGAGCGG
ATGCCCTCGACGTAGCTGTGGCGGGGCTAGCGGCGGCGGTCGAGGGAGCG
CGGGAGGGCTGCCGGTCGGCGCGAGAGAAGAACCGGAGGGGTGCCGTAAA
GCGACTGGAGAGGGTCGAGGCCGGACTGGCGGCAGTGGCAGCGGTGGCGA
CGGCAGCGGCGGAGGCAGCGGCTTCTGTGGAGACAGCGACGGCGGCGGCG
GCGAAGGAGGCGAAGGCGGCGGAGGCAAAGGCAGCGGCGGCGGCGGCGGC
TGCTGCAGTTGCGAATAGAGAAGCGGAAGTGGAAGCCGAGGAGACAGCCG
ACAAGACGACGGCTAATCAGAGTGGTGGTGATGCTGTTTGTAGTACTAGT
AGTAGCAGCACGGCGAGGGCTAGGGCTAGCGCCAAGTCTGCCGCTGCTGT
CGCTGAGGAGGTGAAGTACCTCGCCAAGCGCGTGGCCGAGTTAGAGCCCT
CTCAGCAGACGGCGGCAGTGGCGGTGACGACGGCGGCGGCGGCAGCGGCG
GCGGCGGCGGCAGAACGACTCGTAGAGCAGAAGTCAGAGTGGTGGTGATG
CTGTTTGTAGTACTAGTAGTAGCAGCACGGCGAGGGCTAGGGCTAGCGCC
AAGTCTGCCGCTGCTGTCGCTGAGGAGGTGAAGTACCTCGCCAAGCGCGT
GGCCGAGTTAGAGCCCTCTCAGCAGACGGCGGCAGTGGCGGTGACGACGG
CGGCGGCGGCAGCGGCGGCGGCGGCGGCAGAACGACTCGTAGAGCAGAAG
AGAGCGATAGGGGCGCCGGGGATGGTTGTGTCGGAGAGGCAGAGGGTAGA
CGCGGTTGTAGGGGAGGGGGCGGTGGCCGCGACGGTGCAGCGTGACGGTG
CAGCAAGGGATCGGGGTAGAATTATAGGGGGAATAAGCTGTGGGGGGGGA
GGAAAGCGAGGAGGTGAAGGAAGTGAGGGAGGAGGAGGAGGGGAGTGGAG
AGAAGGGCGAGGAGAGGGAGGGTGGGGACGAGGAGGAGAAGGGAGGTGGA
AAAAAGGGCGAGGAGGAGGAAGAAGGTTGGAGAGCGAGAGGGGAGAGACA
GAGAGAAAAGGAGGAGGAGGAGGAGGAGGGAGGAGGAGCCAGGGAGGCAG
AGGAGGAAGAGGAGGAGGAGGAGGTGGGGGAGGAAGTGGGGGAGAAGAAG
GAGGAGGGCAACGAGACGAGGGCGAAAGAGGACGAGGAGGCCGGAGGGGA
GAGCGATAGGGGCGCCGGGGATGGTTGTGTCGGAGAGGCAGAGGGTAGAC
GCGGTTGTAGGGGAGGGGGCGGTGGCCGCGACGGTGCAGCGTGACGGTGC
AGCAAGGGATCGGGGTAGAATTATAGGGGGAATAAGCTGTGGGGGGGGAG
GAAAGCGAGGAGGTGAAGGAAGTGAGGGAGGAGGAGGAGGGGAGTGGAGA
GAAGGGCGAGGAGAGGGAGGGTGGGGACGAGGAGGAGAAGGGAGGTGGAA
AAAAGGGCGAGGAGGAGGAAGAAGGTTGGAGAGCGAGAGGGGAGAGACAG
AGAGAAAAGGAGGAGGAGGAGGAGGAGGGAGGAGGAGCCAGGGAGGCAGA
GGAGGAAGAGGAGGAGGAGGAGGTGGGGGAGGAAGTGGGGGAGAAGAAGG
AGGAGGGCAACGAGACGAGGGCGAAAGAGGACGAGGAGGCCGGAGGGGTA
GGCGACGTCCAAAAACATCAGGGGGAGGGGCCGGGGGGAGGGCGAGGGGG
GGAGAAAGAGTGGAAATAGTAGATGGGGGGGCAGGCGGACGTCGATAGGC
GACGTCCAAAAACATCAGGGGGAGGGGCCGGGGGGAGGGCGAGGGGGGGA
GAAAGAGTGGAAATAGTAGATGGGGGGGCAGGCGGACGTCGA
back to top