mRNA_M-pyrifera_M_contig104947.1059.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104947.1059.1
Unique NamemRNA_M-pyrifera_M_contig104947.1059.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A0K2TNL8_LEPSM (Uncharacterized protein (Fragment) n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2TNL8_LEPSM)

HSP 1 Score: 94.4 bits (233), Expect = 1.640e-19
Identity = 64/168 (38.10%), Postives = 90/168 (53.57%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLK-------DVLQDAYTLYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAA-----DLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            + L T L+++D+  H AL+ W VD +    LLE+ SPYLE +LK         L     L++ Y     YA A K+   LA      +TL+ERLEYL+RAI   K      E NAA     DL++ MEVA +Q+++L+ ++     E   S AV +LN  L D+S LY
Sbjct:  789 KVLQTCLKSDDQFFHAALYQWLVDEKHYERLLEIQSPYLEDFLKRGTSHHPGTLLMFDLLWKHYEKTQSYAAAAKILSKLAERHSTEVTLKERLEYLSRAIMCVKSGEMGSETNAAGELLHDLEEKMEVARVQLQILDALNTHGGHEV--SSAVSRLNSDLLDISTLY 954
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: UPI000BA81339 (nuclear pore complex protein Nup155-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA81339)

HSP 1 Score: 92.4 bits (228), Expect = 6.160e-19
Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLK-------DVLQDAYTLYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAA-------DLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q     L+++DEL H AL+ W  +      LL++ SP+LE YLK       D L     +++FY  N  Y+ A ++   LA   G  + L++RLEYL+RA+   K  SS + +  A       DL++ MEVA IQ++VLE +  + ++      A+ +LN  + D+++LY
Sbjct:  290 QMFQLALKSDDELFHVALYDWLTEQHQTERLLDIKSPFLENYLKQCTTAQPDNLASVELMWKFYEKNQNYSAAARILAKLADRHGTDINLQQRLEYLSRAVICVK--SSELRITTAGEGEFLHDLEEKMEVARIQLQVLEALMKKSIQLPVIQDAISRLNSDVLDITQLY 457
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A3Q3DLR5_HIPCM (Nucleoporin 155 n=2 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3DLR5_HIPCM)

HSP 1 Score: 92.4 bits (228), Expect = 7.780e-19
Identity = 57/162 (35.19%), Postives = 91/162 (56.17%), Query Frame = 1 
Query:   22 RANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAAD------LDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++   +       L+R+Y  N  + +A  +   LA      ++L++RLEYLARAI S K  SS +   AAD      L++ ME+  IQV++ E +  +C        AV +L+  L D+++LY
Sbjct:  888 RSQDELFHIALYNWLIQADLADKLLEVNSPYLEEHLMHMIKQDQSKVHNMDLLWRYYEKNRNFGKAAHVLARLADMHSTEISLKQRLEYLARAILSAKS-SSCISAQAADGEFLHELEEKMELVRIQVQIQETLIRQCSNHPSVKNAVSQLDSDLMDITKLY 1048
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A1A8GDU1_9TELE (Nucleoporin 155 (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8GDU1_9TELE)

HSP 1 Score: 90.5 bits (223), Expect = 3.390e-18
Identity = 59/169 (34.91%), Postives = 93/169 (55.03%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAAD------LDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++   +       L+R+Y  N  + +A  +   LA      ++L++RLEY+ARAI S K  SS V   A+D      L+D ME+  IQV++ E + G+         AV +L+  L D+++LY
Sbjct:  303 QMLGLAQRSQDELFHIALYNWLIQADLSDKLLEVNSPYLEEHLMHMIRQDQSKVHNMDLLWRYYEKNRNFGKAAHVLARLADLHSTEISLKQRLEYIARAILSAKS-SSGVSARASDGEFLRELEDKMELVRIQVQIQETLIGQYSHHPSVKNAVSQLDAELMDITKLY 470
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A1A8FS60_9TELE (Nucleoporin 155 (Fragment) n=1 Tax=Nothobranchius korthausae TaxID=1143690 RepID=A0A1A8FS60_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 9.050e-18
Identity = 58/169 (34.32%), Postives = 93/169 (55.03%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAAD------LDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++   +       L+R+Y  N  + +A  +   LA      ++L++RLEY+ARAI S K  SS +   A+D      L+D ME+  IQV++ E + G+         AV +L+  L D+++LY
Sbjct:  625 QMLGLAQRSQDELFHIALYNWLIQADLSDKLLEVNSPYLEEHLMHMIRQDQSKVHNMDLLWRYYEKNRNFGKAAHVLARLADLHSTEISLKQRLEYIARAILSAKS-SSGMSARASDGEFLRELEDKMELVRIQVQIQETLIGQYSHHPSVKNAVSQLDAELMDITKLY 792
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A3B3Q4Q0_9TELE (Nucleoporin 155 n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3Q4Q0_9TELE)

HSP 1 Score: 89.4 bits (220), Expect = 9.160e-18
Identity = 56/168 (33.33%), Postives = 91/168 (54.17%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAA-----DLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +   +LLEV+SPYLE +L  +++           L+R+Y  N  +++A  +   LA      ++L++RLEY++RAI S K  S T    A      +L++ MEV  IQV++ E +S +  +      AV +L+  L D+++LY
Sbjct:  758 QVLQLAQRSQDELFHIALYNWLIQADLTEKLLEVNSPYLEEHLMRMIKQDQNKVHSMDLLWRYYEKNRSFSKAAHVLARLADMHSTEISLKQRLEYISRAILSAKSFSGTSSQGADGEFLNELEEKMEVVRIQVQIQETLSRQYSQHPSVQAAVSQLDSELMDITKLY 925
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A3P8WIF1_CYNSE (Nucleoporin 155 n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P8WIF1_CYNSE)

HSP 1 Score: 89.4 bits (220), Expect = 9.190e-18
Identity = 56/169 (33.14%), Postives = 93/169 (55.03%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAAD------LDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++   +       L+R+Y  N  + +A  +   LA      ++L++RLEYLARAI S K  SS++   A+D      L++ ME+  IQV++ E +  +         A+ +L+  L D+++LY
Sbjct:  879 QMLGLAQRSQDELFHIALYNWLIQADLTDKLLEVNSPYLEEHLMHMIKQDQSKVHNMDLLWRYYEKNRNFGKAAHVLARLADMHSTEISLKQRLEYLARAILSAKS-SSSISAQASDGEFLHELEEKMELVRIQVQIQETLIRQSFHHPSVKNAISQLDSELMDITKLY 1046
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A6J0TSN7_9SAUR (nuclear pore complex protein Nup155 n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0TSN7_9SAUR)

HSP 1 Score: 88.2 bits (217), Expect = 2.350e-17
Identity = 56/169 (33.14%), Postives = 96/169 (56.80%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYL-------KDVLQDAYTLYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAAD------LDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL   AL+GW V  +  ++LL+++SP+LE YL       ++ ++    L+R++  N  ++ A ++   LA      ++L++RLEY+ARAI S K  S+ +   AAD      L++ MEVA IQ ++ E +  +C   +   +A+ +L+  L D+S+LY
Sbjct: 1018 QMLKLAQRSTDELFSIALYGWLVQADLSDKLLQINSPFLEPYLTRMAKVDQNKVRYMDLLWRYFEKNRSFSSAARVLAKLADMHSTEISLQQRLEYIARAILSAKS-STAISPIAADGEFLHELEEKMEVARIQFQIQEALQRQCSHHSSVQEAISRLDSELMDISKLY 1185
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: A0A6P8EEH6_CLUHA (nuclear pore complex protein Nup155 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8EEH6_CLUHA)

HSP 1 Score: 87.4 bits (215), Expect = 4.370e-17
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAA-----DLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++           L+R+Y  +  + +A  +   LA      ++LR+RLEY++RAI S K  S T    A      +L++ MEVA IQV++ + +S    +      A+ +L+  L D+++LY
Sbjct: 1016 QMLGLAQRSQDELFHIALYNWLIQADLTDKLLEVNSPYLEDHLMHIIKQDLNKVRNMDLLWRYYEKSRNFGKAAHVLARLADMHSTEISLRQRLEYISRAILSAKSSSCTSSQGADGEFLHELEEKMEVARIQVQIQDMLSRRHSQHPSAQAAIAQLDSELMDITKLY 1183
[Close]
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Match: UPI001C0890DD (nuclear pore complex protein Nup155 isoform X1 n=5 Tax=Alosa TaxID=34772 RepID=UPI001C0890DD)

HSP 1 Score: 87.4 bits (215), Expect = 4.370e-17
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = 1 
Query:    1 QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDAYT-------LYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKECSSTVEVNAA-----DLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLHDLSELY 468
            Q L    R+ DEL H AL+ W +  +  ++LLEV+SPYLE +L  +++           L+R+Y  +  + +A+ +   LA      ++LR+RLEY++RAI S K  S T    A      +L++ MEVA IQV++ E +     +      A+ +L+  L D+++LY
Sbjct: 1030 QMLGLAQRSQDELFHIALYNWLIQTDLADKLLEVNSPYLEDHLMHIIKQDQNKVRNMDLLWRYYEKSRNFGKASHVLARLADMHSTEISLRQRLEYISRAILSAKSSSCTSSQGADGEFLHELEEKMEVARIQVQIQEMLIRRHSQHPSAQAAIAQLDSELMDITKLY 1197
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104947.1059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K2TNL8_LEPSM1.640e-1938.10Uncharacterized protein (Fragment) n=2 Tax=Lepeoph... [more]
UPI000BA813396.160e-1933.53nuclear pore complex protein Nup155-like n=1 Tax=L... [more]
A0A3Q3DLR5_HIPCM7.780e-1935.19Nucleoporin 155 n=2 Tax=Hippocampus comes TaxID=10... [more]
A0A1A8GDU1_9TELE3.390e-1834.91Nucleoporin 155 (Fragment) n=1 Tax=Nothobranchius ... [more]
A0A1A8FS60_9TELE9.050e-1834.32Nucleoporin 155 (Fragment) n=1 Tax=Nothobranchius ... [more]
A0A3B3Q4Q0_9TELE9.160e-1833.33Nucleoporin 155 n=1 Tax=Paramormyrops kingsleyae T... [more]
A0A3P8WIF1_CYNSE9.190e-1833.14Nucleoporin 155 n=4 Tax=Percomorphaceae TaxID=1489... [more]
A0A6J0TSN7_9SAUR2.350e-1733.14nuclear pore complex protein Nup155 n=1 Tax=Pogona... [more]
A0A6P8EEH6_CLUHA4.370e-1732.74nuclear pore complex protein Nup155 n=1 Tax=Clupea... [more]
UPI001C0890DD4.370e-1732.74nuclear pore complex protein Nup155 isoform X1 n=5... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104947contigM-pyrifera_M_contig104947:107..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score90.5
Seed ortholog evalue7.5e-16
Seed eggNOG ortholog244447.XP_008324126.1
Preferred nameNUP155
KEGG koko:K14312
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000972,GO:0001508,GO:0001555,GO:0001654,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003674,GO:0003682,GO:0005198,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006936,GO:0006941,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007015,GO:0007017,GO:0007049,GO:0007051,GO:0007053,GO:0007140,GO:0007154,GO:0007267,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007295,GO:0007300,GO:0007303,GO:0007423,GO:0007444,GO:0008015,GO:0008016,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009888,GO:0009987,GO:0009994,GO:0010256,GO:0010467,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016049,GO:0016482,GO:0017038,GO:0017056,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030029,GO:0030036,GO:0030048,GO:0030154,GO:0030715,GO:0030717,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035220,GO:0035295,GO:0035637,GO:0036228,GO:0040007,GO:0042127,GO:0042306,GO:0042307,GO:0042391,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043900,GO:0043902,GO:0044057,GO:0044085,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044611,GO:0044703,GO:0045184,GO:0045477,GO:0045595,GO:0046822,GO:0046824,GO:0046907,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048588,GO:0048589,GO:0048599,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0051028,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051222,GO:0051223,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051276,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0055049,GO:0055050,GO:0060047,GO:0060048,GO:0060284,GO:0060341,GO:0060429,GO:0061024,GO:0061337,GO:0061982,GO:0061988,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070201,GO:0070252,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0086001,GO:0086002,GO:0086003,GO:0086014,GO:0086019,GO:0086026,GO:0086065,GO:0086066,GO:0090087,GO:0090306,GO:0090316,GO:0090435,GO:0097435,GO:0140013,GO:1900180,GO:1900182,GO:1903046,GO:1903522,GO:1903827,GO:1903829,GO:1904589,GO:1904591,GO:1904748,GO:1904951,GO:1905475,GO:1905879,GO:1905936,GO:1905938,GO:2000241,GO:2000243
EggNOG free text desc.Nuclear pore complex protein
EggNOG OGs38TTX@33154,3BAXK@33208,3CSPY@33213,4818G@7711,48ZBG@7742,49ZWV@7898,COG5308@1,KOG1900@2759
COG Functional cat.UY
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size468
Cds size468
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.1891658-CDS-M-pyrifera_M_contig104947:106..5741622815557.1891658-CDS-M-pyrifera_M_contig104947:106..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104947 107..574 +
1692277462.6215234-CDS-M-pyrifera_M_contig104947:106..5741692277462.6215234-CDS-M-pyrifera_M_contig104947:106..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104947 107..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104947.1059.1prot_M-pyrifera_M_contig104947.1059.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104947 107..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104947.1059.1

>prot_M-pyrifera_M_contig104947.1059.1 ID=prot_M-pyrifera_M_contig104947.1059.1|Name=mRNA_M-pyrifera_M_contig104947.1059.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=156bp
QALHTVLRANDELAHRALFGWFVDNEAVNELLEVHSPYLEAYLKDVLQDA
YTLYRFYVVNNRYAEATKLAYSLALAEGNGLTLRERLEYLARAIASCKEC
SSTVEVNAADLDDMMEVAHIQVKVLERVSGECLEEADKSKAVEKLNHGLH
DLSELY
back to top

mRNA from alignment at M-pyrifera_M_contig104947:107..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104947.1059.1 ID=mRNA_M-pyrifera_M_contig104947.1059.1|Name=mRNA_M-pyrifera_M_contig104947.1059.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig104947:107..574+ (Macrocystis pyrifera P11B4 male)
CAGGCGCTACACACAGTTCTGCGTGCCAACGACGAGCTGGCACACCGTGC
TCTGTTCGGTTGGTTTGTGGACAACGAGGCAGTGAACGAGCTGCTGGAGG
TGCACTCGCCCTACCTGGAGGCGTACCTGAAGGACGTGCTCCAAGACGCG
TACACGCTCTACCGCTTCTATGTGGTCAACAACAGATACGCCGAGGCGAC
GAAGCTCGCCTACAGCCTCGCGCTGGCAGAGGGCAACGGCCTCACACTCC
GTGAGCGGCTGGAGTACCTGGCGAGGGCCATCGCCAGCTGCAAGGAGTGC
TCCTCCACCGTGGAGGTGAACGCAGCAGACCTGGACGACATGATGGAGGT
GGCGCACATCCAGGTGAAGGTGCTCGAGCGCGTGAGCGGCGAATGCCTGG
AGGAGGCCGACAAGAGCAAGGCGGTGGAGAAGCTCAACCACGGCCTCCAC
GACCTCTCGGAGCTCTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104947:107..574+

>mRNA_M-pyrifera_M_contig104947.1059.1 ID=mRNA_M-pyrifera_M_contig104947.1059.1|Name=mRNA_M-pyrifera_M_contig104947.1059.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=936bp|location=Sequence derived from alignment at M-pyrifera_M_contig104947:107..574+ (Macrocystis pyrifera P11B4 male)
CAGGCGCTACACACAGTTCTGCGTGCCAACGACGAGCTGGCACACCGTGC
TCTGTTCGGTTGGTTTGTGGACAACGAGGCAGTGAACGAGCTGCTGGAGG
TGCACTCGCCCTACCTGGAGGCGTACCTGAAGGACGTGCTCCAAGACGCG
TACACGCTCTACCGCTTCTATGTGGTCAACAACAGATACGCCGAGGCGAC
GAAGCTCGCCTACAGCCTCGCGCTGGCAGAGGGCAACGGCCTCACACTCC
GTGAGCGGCTGGAGTACCTGGCGAGGGCCATCGCCAGCTGCAAGGAGTGC
TCCTCCACCGTGGAGGTGAACGCAGCAGACCTGGACGACATGATGGAGGT
GGCGCACATCCAGGTGAAGGTGCTCGAGCGCGTGAGCGGCGAATGCCTGG
AGGAGGCCGACAAGAGCAAGGCGGTGGAGAAGCTCAACCACGGCCTCCAC
GACCTCTCGGAGCTCTACCAGGCGCTACACACAGTTCTGCGTGCCAACGA
CGAGCTGGCACACCGTGCTCTGTTCGGTTGGTTTGTGGACAACGAGGCAG
TGAACGAGCTGCTGGAGGTGCACTCGCCCTACCTGGAGGCGTACCTGAAG
GACGTGCTCCAAGACGCGTACACGCTCTACCGCTTCTATGTGGTCAACAA
CAGATACGCCGAGGCGACGAAGCTCGCCTACAGCCTCGCGCTGGCAGAGG
GCAACGGCCTCACACTCCGTGAGCGGCTGGAGTACCTGGCGAGGGCCATC
GCCAGCTGCAAGGAGTGCTCCTCCACCGTGGAGGTGAACGCAGCAGACCT
GGACGACATGATGGAGGTGGCGCACATCCAGGTGAAGGTGCTCGAGCGCG
TGAGCGGCGAATGCCTGGAGGAGGCCGACAAGAGCAAGGCGGTGGAGAAG
CTCAACCACGGCCTCCACGACCTCTCGGAGCTCTAC
back to top