mRNA_M-pyrifera_M_contig104945.1058.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104945.1058.1
Unique NamemRNA_M-pyrifera_M_contig104945.1058.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A7R9KS22_9ACAR (Hypothetical protein n=1 Tax=Medioppia subpectinata TaxID=1979941 RepID=A0A7R9KS22_9ACAR)

HSP 1 Score: 107 bits (268), Expect = 5.220e-28
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            E  NRLVV++CNLK +K+RG  S+AMV+CAS  +KVE++SP EGS  GD++   K  G  D ++N KKK+  W  + PDL TDG R+A+Y+G   + E+ G  T  +L N  ++
Sbjct:    7 EMNNRLVVVLCNLKPAKMRGITSEAMVMCASTPEKVEILSPPEGSLPGDRVVFDKYPGTADSQLNPKKKI--WEQIAPDLKTDGSRVATYKGEPFKVESKGLVTAQTLANVAVK 118
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: UPI001E1C6FF9 (aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like n=1 Tax=Coregonus clupeaformis TaxID=59861 RepID=UPI001E1C6FF9)

HSP 1 Score: 109 bits (273), Expect = 2.920e-27
Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+ VL+CNLK +K+RG  SQAMV+CAS  DKVE++ P  G+  GD++      GEPDKE+N KKKV  W AV PDL TDGQ +A+Y+G   Q    G C   ++ N+ ++
Sbjct:  141 QMQNRMAVLLCNLKPAKMRGVLSQAMVMCASSPDKVEILDPPSGAVPGDRVIFQGFPGEPDKELNPKKKV--WEAVQPDLETDGQCVATYKGAPFQIAGKGVCKAQTMSNSCIK 252
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A0P7TKP7_SCLFO (tRNA-binding domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7TKP7_SCLFO)

HSP 1 Score: 106 bits (264), Expect = 3.830e-27
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQ 288
            +  NR+ VL+CNLK +K+RG  SQAMV+CAS  DKVE++ P  G+  GD++ V    GEPDKE+N KKKV  W  V PDL T+ QR+A+Y+GV  +
Sbjct:   19 QMQNRMAVLLCNLKPAKMRGVVSQAMVMCASTPDKVEILDPPPGAAPGDRVTVQGFPGEPDKELNPKKKV--WEQVQPDLRTNDQRVATYKGVAFE 112
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A8C9V799_SCLFO (Aminoacyl tRNA synthetase complex interacting multifunctional protein 1 n=2 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9V799_SCLFO)

HSP 1 Score: 110 bits (275), Expect = 5.820e-27
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+ VL+CNLK +K+RG  SQAMV+CAS  DKVE++ P  G+  GD++ V    GEPDKE+N KKKV  W  V PDL T+ QR+A+Y+GV  +    G C   ++ N+ ++
Sbjct:  211 QMQNRMAVLLCNLKPAKMRGVVSQAMVMCASTPDKVEILDPPPGAAPGDRVTVQGFPGEPDKELNPKKKV--WEQVQPDLRTNDQRVATYKGVAFEVAGKGVCKAQTMTNSGIK 322
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A444UHQ5_ACIRT (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 n=6 Tax=Acipenseroidei TaxID=186622 RepID=A0A444UHQ5_ACIRT)

HSP 1 Score: 110 bits (274), Expect = 6.150e-27
Identity = 54/114 (47.37%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQ-TEAGPCTVASLVNAHLR 339
            +  NR+ VL+CNLKA+K+RG  SQAMV+CAS  DKVE++ P  G+  GD++      GEPDKE+N KKKV  W  + PDL TDGQ +A+Y+G   + T  G C   ++ N+ ++
Sbjct:  195 QMQNRMAVLLCNLKAAKMRGVVSQAMVMCASSPDKVEVLDPPSGAVPGDRVTFRGFPGEPDKELNPKKKV--WEQIQPDLRTDGQCIATYKGAAFEITGKGVCKAQTMSNSGIK 306
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A061RKT1_9CHLO (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RKT1_9CHLO)

HSP 1 Score: 105 bits (262), Expect = 8.610e-27
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDD--KVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEAGPCTVASLVNAHLR 339
            E  NR VV+V NLK + +RG +S AMVLCAS  D  +VE+V+P EG+  G+++      GEPD+++N KKK+  + AV  DL TDG  +A+Y+GV   T AGPC VAS+V   ++
Sbjct:   31 EMQNRRVVVVTNLKPASMRGVKSHAMVLCASSADGSRVEIVTPPEGAAIGERVSFEGYPGEPDEQLNPKKKI--FEAVSQDLATDGSCVATYKGVPFMTSAGPCKVASIVGGGIK 143
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A1S3SL84_SALSA (aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 n=4 Tax=Salmoninae TaxID=504568 RepID=A0A1S3SL84_SALSA)

HSP 1 Score: 109 bits (273), Expect = 8.960e-27
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+ VL+CNLK +K+RG  SQAMV+CAS  DKVE++ P  G+  GD++      GEPDKE+N KKKV  W AV PDL TDGQ +A+Y+G   +    G C   ++ N+ ++
Sbjct:  197 QMQNRMAVLLCNLKPAKMRGVVSQAMVMCASSPDKVEILDPPSGAVPGDRVIFQGFPGEPDKELNPKKKV--WEAVQPDLKTDGQCVANYKGAPFEIAGKGVCKAQTMSNSGIK 308
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: UPI0003C8D5B6 (aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=UPI0003C8D5B6)

HSP 1 Score: 109 bits (273), Expect = 1.090e-26
Identity = 55/114 (48.25%), Postives = 77/114 (67.54%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+VVL+CNLK +K+RG  SQAMV+CAS  +KVE+++P EGS  GDKI      GEPDKE+N KKK+  W  + PDL T+   +A+YRGV  Q +  G C   ++ N+ ++
Sbjct:  208 QMQNRMVVLLCNLKPAKMRGVVSQAMVMCASSPEKVEILAPPEGSVPGDKITFDAFPGEPDKELNPKKKI--WEQIQPDLHTNEDCVATYRGVPFQVKGKGVCRAQTMANSGIK 319
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A1S3RDU7_SALSA (aminoacyl tRNA synthase complex-interacting multifunctional protein 1 n=13 Tax=Salmonidae TaxID=8015 RepID=A0A1S3RDU7_SALSA)

HSP 1 Score: 109 bits (273), Expect = 1.110e-26
Identity = 54/114 (47.37%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+ VL+CNLK +K+RG  SQAMV+CAS  DKVE++ P  G+  GD++      GEPDKE+N KKKV  W AV PDL TDGQ +A+Y+G   +    G C   ++ N+ ++
Sbjct:  209 QMQNRMAVLLCNLKPAKMRGVVSQAMVMCASSPDKVEILDPPSGAVPGDRVIFQGFPGEPDKELNPKKKV--WEAVQPDLKTDGQCVANYKGAPFEIAGKGVCKAQTMSNSGIK 320
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BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Match: A0A3Q1IID1_ANATE (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1-like n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1IID1_ANATE)

HSP 1 Score: 109 bits (272), Expect = 1.130e-26
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1 
Query:    1 EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDKIFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEA-GPCTVASLVNAHLR 339
            +  NR+VVL+CNLK   +RG  SQAMV+CAS  DKVE++ P  G+  GD+I      GEPDKE+N KKKV  W  + PDL TDGQ +A+YRG   +    G C   ++ N+ ++
Sbjct:  191 QVQNRMVVLLCNLKPVTIRGVVSQAMVMCASSSDKVEIIDPPSGAVPGDRIIFETFPGEPDKELNPKKKV--WEQIQPDLRTDGQCVATYRGAAFEVAGKGVCKAQTMSNSEIK 302
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104945.1058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9KS22_9ACAR5.220e-2846.49Hypothetical protein n=1 Tax=Medioppia subpectinat... [more]
UPI001E1C6FF92.920e-2748.25aminoacyl tRNA synthase complex-interacting multif... [more]
A0A0P7TKP7_SCLFO3.830e-2753.13tRNA-binding domain-containing protein n=1 Tax=Scl... [more]
A0A8C9V799_SCLFO5.820e-2747.37Aminoacyl tRNA synthetase complex interacting mult... [more]
A0A444UHQ5_ACIRT6.150e-2747.37Aminoacyl tRNA synthase complex-interacting multif... [more]
A0A061RKT1_9CHLO8.610e-2747.83Aminoacyl tRNA synthase complex-interacting multif... [more]
A0A1S3SL84_SALSA8.960e-2747.37aminoacyl tRNA synthase complex-interacting multif... [more]
UPI0003C8D5B61.090e-2648.25aminoacyl tRNA synthase complex-interacting multif... [more]
A0A1S3RDU7_SALSA1.110e-2647.37aminoacyl tRNA synthase complex-interacting multif... [more]
A0A3Q1IID1_ANATE1.130e-2647.37Aminoacyl tRNA synthase complex-interacting multif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104945contigM-pyrifera_M_contig104945:2..343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score108.6
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog246437.XP_006151231.1
Preferred nameAIMP1
KEGG koko:K15437
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001936,GO:0001937,GO:0002376,GO:0002791,GO:0002793,GO:0003674,GO:0003676,GO:0003723,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006954,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009605,GO:0009611,GO:0009966,GO:0009986,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010647,GO:0010817,GO:0016070,GO:0016477,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0019899,GO:0023051,GO:0023052,GO:0023056,GO:0030545,GO:0032879,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0042127,GO:0042221,GO:0042330,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046883,GO:0046887,GO:0046983,GO:0048018,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048870,GO:0050678,GO:0050680,GO:0050789,GO:0050794,GO:0050896,GO:0050900,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051674,GO:0051716,GO:0065007,GO:0065008,GO:0065009,GO:0070092,GO:0070094,GO:0071704,GO:0090087,GO:0090276,GO:0090277,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903530,GO:1903532
EggNOG free text desc.positive regulation of glucagon secretion
EggNOG OGs35CSF@314146,38C9W@33154,3BGHP@33208,3CU5M@33213,3J2ID@40674,484UI@7711,49328@7742,COG0143@1,KOG2241@2759
COG Functional cat.J
Best tax levelEuarchontoglires
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.146612-CDS-M-pyrifera_M_contig104945:1..3431622815557.146612-CDS-M-pyrifera_M_contig104945:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104945 2..343 +
1692277462.6095803-CDS-M-pyrifera_M_contig104945:1..3431692277462.6095803-CDS-M-pyrifera_M_contig104945:1..343Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104945 2..343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104945.1058.1prot_M-pyrifera_M_contig104945.1058.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104945 2..343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104945.1058.1

>prot_M-pyrifera_M_contig104945.1058.1 ID=prot_M-pyrifera_M_contig104945.1058.1|Name=mRNA_M-pyrifera_M_contig104945.1058.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
EFTNRLVVLVCNLKASKLRGQESQAMVLCASLDDKVELVSPAEGSKAGDK
IFVAKCTGEPDKEINTKKKVNAWTAVLPDLMTDGQRLASYRGVELQTEAG
PCTVASLVNAHLR*
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mRNA from alignment at M-pyrifera_M_contig104945:2..343+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104945.1058.1 ID=mRNA_M-pyrifera_M_contig104945.1058.1|Name=mRNA_M-pyrifera_M_contig104945.1058.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig104945:2..343+ (Macrocystis pyrifera P11B4 male)
GAGTTCACCAACCGCCTCGTGGTGCTGGTGTGTAACCTCAAGGCGAGCAA
GCTGCGAGGCCAGGAGTCCCAGGCCATGGTGCTGTGTGCCTCTCTCGACG
ATAAGGTGGAGCTCGTCAGCCCTGCAGAAGGTAGCAAGGCAGGAGACAAG
ATCTTCGTCGCCAAGTGCACTGGCGAACCCGACAAGGAAATCAACACCAA
GAAGAAGGTTAACGCTTGGACTGCCGTTCTCCCCGACCTCATGACTGACG
GCCAGCGTCTCGCCTCCTACAGGGGAGTGGAGCTCCAGACGGAGGCAGGC
CCCTGCACCGTCGCCTCCCTCGTCAACGCTCACCTCCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104945:2..343+

>mRNA_M-pyrifera_M_contig104945.1058.1 ID=mRNA_M-pyrifera_M_contig104945.1058.1|Name=mRNA_M-pyrifera_M_contig104945.1058.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig104945:2..343+ (Macrocystis pyrifera P11B4 male)
GAGTTCACCAACCGCCTCGTGGTGCTGGTGTGTAACCTCAAGGCGAGCAA
GCTGCGAGGCCAGGAGTCCCAGGCCATGGTGCTGTGTGCCTCTCTCGACG
ATAAGGTGGAGCTCGTCAGCCCTGCAGAAGGTAGCAAGGCAGGAGACAAG
ATCTTCGTCGCCAAGTGCACTGGCGAACCCGACAAGGAAATCAACACCAA
GAAGAAGGTTAACGCTTGGACTGCCGTTCTCCCCGACCTCATGACTGACG
GCCAGCGTCTCGCCTCCTACAGGGGAGTGGAGCTCCAGACGGAGGCAGGC
CCCTGCACCGTCGCCTCCCTCGTCAACGCTCACCTCCGCTGAGAGTTCAC
CAACCGCCTCGTGGTGCTGGTGTGTAACCTCAAGGCGAGCAAGCTGCGAG
GCCAGGAGTCCCAGGCCATGGTGCTGTGTGCCTCTCTCGACGATAAGGTG
GAGCTCGTCAGCCCTGCAGAAGGTAGCAAGGCAGGAGACAAGATCTTCGT
CGCCAAGTGCACTGGCGAACCCGACAAGGAAATCAACACCAAGAAGAAGG
TTAACGCTTGGACTGCCGTTCTCCCCGACCTCATGACTGACGGCCAGCGT
CTCGCCTCCTACAGGGGAGTGGAGCTCCAGACGGAGGCAGGCCCCTGCAC
CGTCGCCTCCCTCGTCAACGCTCACCTCCGCTGA
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