mRNA_M-pyrifera_M_contig104934.1057.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104934.1057.1
Unique NamemRNA_M-pyrifera_M_contig104934.1057.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A0L0SLM5_ALLM3 (UBC core domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SLM5_ALLM3)

HSP 1 Score: 161 bits (407), Expect = 2.720e-43
Identity = 77/139 (55.40%), Postives = 102/139 (73.38%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTLS 417
            F  R+DLL  L+FG   TPY  APF+F IQ PA YP  PP+V F +    R+NPNL+E+GKVCLSLLGTW GK  ESW+PS+ST+LQ++VS+QGL+L    P+FLEPGY  ++G+++G + S  YN+   ILSLK T++
Sbjct:  626 FSSRLDLLVALVFGPDDTPYAGAPFLFEIQLPADYPRTPPSVYFMNRSGGRMNPNLHEDGKVCLSLLGTWHGKSYESWNPSTSTILQLLVSIQGLVL-VKHPYFLEPGYGKYQGTSDGTQNSRMYNERVRILSLKGTVA 763          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A833YFP4_JUGRE (UBC core domain-containing protein n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833YFP4_JUGRE)

HSP 1 Score: 150 bits (380), Expect = 7.920e-43
Identity = 80/135 (59.26%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLK 405
            +E RM+LL+ +I G  GTPYH   FVF+  FP TYPS PP V + S    RLNPNLY+ GKVCLSLLGTW GK  E W P  ST+LQV+VS+Q LIL  A PFF EPGYE     AEG  +S++YN  A ILSLK
Sbjct:  113 YEARMELLRAVIIGPAGTPYHDGLFVFDCLFPTTYPSSPPMVYYYSG-GLRLNPNLYDCGKVCLSLLGTWTGKQNEMWIPEKSTMLQVLVSIQALILN-AKPFFNEPGYETTYVGAEGERRSMEYNDNAFILSLK 245          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A7S0W9U9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W9U9_9CRYP)

HSP 1 Score: 150 bits (379), Expect = 1.030e-42
Identity = 76/139 (54.68%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTLS 417
            FE+R DLLQ +I G  GTPY    F F+IQ P+ YP VPP V + +    RLNPNLYENGKVCLSLLGTW G   ESW P  S++LQV+VS+QGLIL    P++ EP YE +RG+ EG   S  YN++A +L+L+  L+
Sbjct:   46 FEDRADLLQAVIKGPLGTPYSNGLFFFDIQLPSDYPDVPPRVYYHAH-GDRLNPNLYENGKVCLSLLGTWAGSSVESWDPKKSSILQVLVSIQGLIL-VPEPYYNEPSYEQYRGTEEGELSSKQYNESAFLLTLQSVLA 182          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A7S0UGW3_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UGW3_HEMAN)

HSP 1 Score: 149 bits (377), Expect = 2.360e-42
Identity = 76/139 (54.68%), Postives = 95/139 (68.35%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTLS 417
            FE+R DLLQ +I G  GTPY    F F+IQ P+ YP VPP V + +    RLNPNLYENGKVCLSLLGTW G   ESW P  S +LQV+VS+QGLIL    P++ EP YE +RG+ EG   S  YN++A +L+L+  L+
Sbjct:   63 FEDRADLLQAVIKGPSGTPYSNGLFFFDIQLPSDYPDVPPRVYYHAH-GDRLNPNLYENGKVCLSLLGTWAGSTVESWDPKKSNILQVLVSIQGLIL-VPEPYYNEPSYEQYRGTEEGELSSKQYNESAYLLTLQSILA 199          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: F0Y522_AURAN (UBC core domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y522_AURAN)

HSP 1 Score: 145 bits (366), Expect = 4.740e-42
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSV-LTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTLS 417
            F+ER DLL+ +I G  GTPY    F F++Q PA YP  PP + + S  +T RLNPNLYENGKVCLSLLGTW G     W P SSTVLQ++VS+QGL+L    P++ EPG E   G+ EG +++  YN+ A +LSL+ T+S
Sbjct:   10 FQERSDLLRCVIVGPDGTPYERMVFAFDLQLPAAYPKEPPAMHYHSWGITERLNPNLYENGKVCLSLLGTWSGP---GWDPESSTVLQLLVSLQGLVL-VDKPYYNEPGNEKHAGTLEGEQQARSYNENAKLLSLQATIS 145          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A392N0F4_9FABA (Putative ubiquitin-conjugating enzyme E2 25-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392N0F4_9FABA)

HSP 1 Score: 146 bits (369), Expect = 4.760e-42
Identity = 75/135 (55.56%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLK 405
            +E R+DLL+ +I GA+GTPYH   F F++ FP+ +P+VPP V + S    RLNPNLY  GKVCLSLL TW G   E W P  ST+LQV+VS+QGLIL T  P+F EPGY    GSAEG  +SL YN+   +LSL+
Sbjct:    7 YESRIDLLRAVIIGAEGTPYHDGLFFFDVFFPSGFPNVPPQVYYHSG-GLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTK-PYFNEPGYARLSGSAEGEMRSLRYNEDTFLLSLR 139          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A1D6FJU1_MAIZE (Putative ubiquitin-conjugating enzyme E2 25 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6FJU1_MAIZE)

HSP 1 Score: 151 bits (381), Expect = 1.460e-41
Identity = 75/138 (54.35%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTL 414
            +E+RMDLL+ +I G  GTPYH   F F+I FP  YP+VPP V +++    RLNPNLY+ GKVCLSLL TWDG  CE W+P++ST+LQV+VS+Q L+L  A PFF EPGY +   +A G +KSL YN+   +LS +  L
Sbjct:  233 YEDRMDLLRGVIMGPAGTPYHDGLFFFDIYFPPRYPNVPPMVNYRAG-GLRLNPNLYDCGKVCLSLLNTWDGSGCEKWNPANSTMLQVLVSIQALVLN-AKPFFNEPGYAMHANTAHGEKKSLAYNEDTFLLSCRTML 368          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A7S1UES5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UES5_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.590e-41
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTL 414
            +E R DL++ +IFG  GTPY   PFVF+I+ PA+YP+VPP V F S++  RLNPNLY +GKVCLSLLGTW G     W+ S ST+LQV+ S+QGL+L TA PFF EPGYE   G+ +G + S  YN+TA +LSL+  L
Sbjct:  167 YEARTDLMRAVIFGPGGTPYADVPFVFDIRMPASYPAVPPKVFFHSLVKERLNPNLYVDGKVCLSLLGTWTGP---GWT-SESTILQVLASIQGLVL-TAEPFFNEPGYEAQAGTPQGDQNSALYNETARLLSLRMLL 299          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: UPI0009E2FC86 (putative ubiquitin-conjugating enzyme E2 38 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E2FC86)

HSP 1 Score: 150 bits (380), Expect = 1.740e-41
Identity = 77/138 (55.80%), Postives = 99/138 (71.74%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLKHTL 414
            FE+RMD+L+ +I G  GTPYH   F F+I FP T+P VPP V + S    RLNPNLY+ GKVCLSLL TW G+ CE+W+ S+ST+LQV+VS+Q L+L  A P+F EPG+EL   +  G ++SL YN+TA ILS K  L
Sbjct:  168 FEDRMDILRAVIIGPAGTPYHDGLFFFDIYFPPTFPLVPPMVHYHSG-GLRLNPNLYQCGKVCLSLLNTWPGQGCETWNSSNSTILQVLVSIQALVLN-AKPYFNEPGFELSVNTPYGRKESLAYNETAFILSCKTML 303          
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Match: A0A151SVP6_CAJCA (Putative ubiquitin carrier protein E2 25 (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SVP6_CAJCA)

HSP 1 Score: 153 bits (387), Expect = 1.910e-41
Identity = 78/135 (57.78%), Postives = 95/135 (70.37%), Query Frame = 1
Query:    1 FEERMDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNPNLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFFLEPGYELFRGSAEGIEKSLDYNQTALILSLK 405
            +E RMDLL+ +I GA+GTPYH   F F++ FP++YPSVPP V + S    RLNPNLY+ GKVCLSLL TW G   E W P  ST+LQV+VS+QGLIL T  P+F EPGY    GSA G +KS  YN+   ILSL+
Sbjct:  294 YESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSSYPSVPPQVHYHSG-GLRLNPNLYDCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTK-PYFNEPGYARMSGSANGEKKSFQYNEDTFILSLR 426          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104934.1057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0SLM5_ALLM32.720e-4355.40UBC core domain-containing protein n=2 Tax=Allomyc... [more]
A0A833YFP4_JUGRE7.920e-4359.26UBC core domain-containing protein n=1 Tax=Juglans... [more]
A0A7S0W9U9_9CRYP1.030e-4254.68Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0UGW3_HEMAN2.360e-4254.68Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
F0Y522_AURAN4.740e-4252.86UBC core domain-containing protein (Fragment) n=1 ... [more]
A0A392N0F4_9FABA4.760e-4255.56Putative ubiquitin-conjugating enzyme E2 25-like (... [more]
A0A1D6FJU1_MAIZE1.460e-4154.35Putative ubiquitin-conjugating enzyme E2 25 n=1 Ta... [more]
A0A7S1UES5_9STRA1.590e-4156.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
UPI0009E2FC861.740e-4155.80putative ubiquitin-conjugating enzyme E2 38 n=1 Ta... [more]
A0A151SVP6_CAJCA1.910e-4157.78Putative ubiquitin carrier protein E2 25 (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104934contigM-pyrifera_M_contig104934:163..632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score157.9
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog28583.AMAG_08577T0
KEGG koko:K10581
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGs38KJS@33154,3NYWY@4751,COG5078@1,KOG0895@2759
EC2.3.2.24
COG Functional cat.O
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size417
Cds size405
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104934.1057.1prot_M-pyrifera_M_contig104934.1057.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104934 163..620 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.0820544-CDS-M-pyrifera_M_contig104934:162..5181622815557.0820544-CDS-M-pyrifera_M_contig104934:162..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104934 163..518 -
1692277462.5746665-CDS-M-pyrifera_M_contig104934:162..5181692277462.5746665-CDS-M-pyrifera_M_contig104934:162..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104934 163..518 -
1622815557.09381-CDS-M-pyrifera_M_contig104934:571..6201622815557.09381-CDS-M-pyrifera_M_contig104934:571..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104934 572..620 -
1692277462.5888898-CDS-M-pyrifera_M_contig104934:571..6201692277462.5888898-CDS-M-pyrifera_M_contig104934:571..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104934 572..620 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.1061304-UTR-M-pyrifera_M_contig104934:620..6321622815557.1061304-UTR-M-pyrifera_M_contig104934:620..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104934 621..632 -
1692277462.6007457-UTR-M-pyrifera_M_contig104934:620..6321692277462.6007457-UTR-M-pyrifera_M_contig104934:620..632Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig104934 621..632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104934.1057.1

>prot_M-pyrifera_M_contig104934.1057.1 ID=prot_M-pyrifera_M_contig104934.1057.1|Name=mRNA_M-pyrifera_M_contig104934.1057.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MDLLQVLIFGAKGTPYHLAPFVFNIQFPATYPSVPPTVQFQSVLTSRLNP
NLYENGKVCLSLLGTWDGKDCESWSPSSSTVLQVIVSMQGLILGTAAPFF
LEPGYELFRGSAEGIEKSLDYNQTALILSLKHTLS
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mRNA from alignment at M-pyrifera_M_contig104934:163..632-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104934.1057.1 ID=mRNA_M-pyrifera_M_contig104934.1057.1|Name=mRNA_M-pyrifera_M_contig104934.1057.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=470bp|location=Sequence derived from alignment at M-pyrifera_M_contig104934:163..632- (Macrocystis pyrifera P11B4 male)
TTTGAGGAGCGCATGGACCTTCTTCAGGTGTTGATATTTGGAGCCAAAGG CACTCCCTACCGTGAGCCGACCCCTCCCCGCGCTGCGATAAGCATCAGCT GACAACTGCTGCAGACTTAGCACCCTTCGTCTTCAACATCCAGTTTCCTG CAACGTATCCCAGTGTGCCCCCCACTGTCCAGTTCCAGTCTGTGCTGACC AGCAGACTCAACCCCAACCTGTATGAGAATGGCAAGGTCTGCCTGAGCCT GCTTGGTACCTGGGATGGGAAAGACTGCGAGTCATGGTCGCCTTCCTCAT CCACTGTCCTTCAGGTTATTGTCAGCATGCAGGGCCTCATCCTTGGCACT GCCGCACCGTTCTTCCTGGAGCCTGGCTACGAGCTCTTCCGCGGAAGTGC CGAGGGGATTGAAAAGTCGCTGGACTACAACCAGACCGCACTGATTCTCT CTTTGAAGCACACCCTATCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104934:163..632-

>mRNA_M-pyrifera_M_contig104934.1057.1 ID=mRNA_M-pyrifera_M_contig104934.1057.1|Name=mRNA_M-pyrifera_M_contig104934.1057.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig104934:163..632- (Macrocystis pyrifera P11B4 male)
ATGGACCTTCTTCAGGTGTTGATATTTGGAGCCAAAGGCACTCCCTACCA
TGGACCTTCTTCAGGTGTTGATATTTGGAGCCAAAGGCACTCCCTACCAC
TTAGCACCCTTCGTCTTCAACATCCAGTTTCCTGCAACGTATCCCAGTGT
GCCCCCCACTGTCCAGTTCCAGTCTGTGCTGACCAGCAGACTCAACCCCA
ACCTGTATGAGAATGGCAAGGTCTGCCTGAGCCTGCTTGGTACCTGGGAT
GGGAAAGACTGCGAGTCATGGTCGCCTTCCTCATCCACTGTCCTTCAGGT
TATTGTCAGCATGCAGGGCCTCATCCTTGGCACTGCCGCACCGTTCTTCC
TGGAGCCTGGCTACGAGCTCTTCCGCGGAAGTGCCGAGGGGATTGAAAAG
TCGCTGGACTACAACCAGACCGCACTGATTCTCTCTTTGAAGCACACCCT
ATCCACTTAGCACCCTTCGTCTTCAACATCCAGTTTCCTGCAACGTATCC
CAGTGTGCCCCCCACTGTCCAGTTCCAGTCTGTGCTGACCAGCAGACTCA
ACCCCAACCTGTATGAGAATGGCAAGGTCTGCCTGAGCCTGCTTGGTACC
TGGGATGGGAAAGACTGCGAGTCATGGTCGCCTTCCTCATCCACTGTCCT
TCAGGTTATTGTCAGCATGCAGGGCCTCATCCTTGGCACTGCCGCACCGT
TCTTCCTGGAGCCTGGCTACGAGCTCTTCCGCGGAAGTGCCGAGGGGATT
GAAAAGTCGCTGGACTACAACCAGACCGCACTGATTCTCTCTTTGAAGCA
CACCCTATCC
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