mRNA_M-pyrifera_M_contig104928.1054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104928.1054.1
Unique NamemRNA_M-pyrifera_M_contig104928.1054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104928.1054.1 vs. uniprot
Match: A0A3M0XV22_9PROT (Phenylacetate--CoA ligase family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0XV22_9PROT)

HSP 1 Score: 49.7 bits (117), Expect = 2.420e-5
Identity = 27/52 (51.92%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   25 SAVKGIAWPAIPPPAQAAIFALCAQLDVSQWWPADKIAAMQLAQADTLLQHA 180
            S + GIAWPAIP    A + A+  QL+ SQWW  D +AA QL Q   LL HA
Sbjct:   17 SRMPGIAWPAIPDGRAATLLAIQFQLEQSQWWSPDDLAAWQLRQLRLLLAHA 68
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104928.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3M0XV22_9PROT2.420e-551.92Phenylacetate--CoA ligase family protein n=1 Tax=A... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104928contigM-pyrifera_M_contig104928:451..639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.9391816-CDS-M-pyrifera_M_contig104928:450..6391622815556.9391816-CDS-M-pyrifera_M_contig104928:450..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104928 451..639 +
1692277462.5176206-CDS-M-pyrifera_M_contig104928:450..6391692277462.5176206-CDS-M-pyrifera_M_contig104928:450..639Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104928 451..639 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104928.1054.1prot_M-pyrifera_M_contig104928.1054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104928 451..639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104928.1054.1

>prot_M-pyrifera_M_contig104928.1054.1 ID=prot_M-pyrifera_M_contig104928.1054.1|Name=mRNA_M-pyrifera_M_contig104928.1054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
MLPAAEFPSAVKGIAWPAIPPPAQAAIFALCAQLDVSQWWPADKIAAMQL
AQADTLLQHAFAT
back to top

mRNA from alignment at M-pyrifera_M_contig104928:451..639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104928.1054.1 ID=mRNA_M-pyrifera_M_contig104928.1054.1|Name=mRNA_M-pyrifera_M_contig104928.1054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig104928:451..639+ (Macrocystis pyrifera P11B4 male)
ATGCTGCCCGCCGCCGAATTTCCCAGCGCCGTCAAAGGGATCGCATGGCC
CGCGATCCCGCCACCGGCGCAAGCCGCGATCTTTGCCCTGTGTGCGCAGC
TCGACGTTTCACAGTGGTGGCCGGCGGACAAGATCGCCGCGATGCAGCTC
GCGCAGGCGGACACGCTCCTGCAACACGCGTTCGCGACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104928:451..639+

>mRNA_M-pyrifera_M_contig104928.1054.1 ID=mRNA_M-pyrifera_M_contig104928.1054.1|Name=mRNA_M-pyrifera_M_contig104928.1054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig104928:451..639+ (Macrocystis pyrifera P11B4 male)
ATGCTGCCCGCCGCCGAATTTCCCAGCGCCGTCAAAGGGATCGCATGGCC
CGCGATCCCGCCACCGGCGCAAGCCGCGATCTTTGCCCTGTGTGCGCAGC
TCGACGTTTCACAGTGGTGGCCGGCGGACAAGATCGCCGCGATGCAGCTC
GCGCAGGCGGACACGCTCCTGCAACACGCGTTCGCGACCATGCTGCCCGC
CGCCGAATTTCCCAGCGCCGTCAAAGGGATCGCATGGCCCGCGATCCCGC
CACCGGCGCAAGCCGCGATCTTTGCCCTGTGTGCGCAGCTCGACGTTTCA
CAGTGGTGGCCGGCGGACAAGATCGCCGCGATGCAGCTCGCGCAGGCGGA
CACGCTCCTGCAACACGCGTTCGCGACC
back to top