mRNA_M-pyrifera_M_contig104927.1053.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104927.1053.1
Unique NamemRNA_M-pyrifera_M_contig104927.1053.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A7S2XVB8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB8_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 6.740e-18
Identity = 54/96 (56.25%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPR-QVGPRRPLRTEGALDYEVESDLEWEE--EPEGEDLSGAEEEDD------GNDALDYEDNWLVQDDVIEYDSDA 261
            KLLQF +  RPPYWGT S     QVG RRP      LDYEV+S+ EWEE  + EGEDLS   + DD      G D LDYED WL QDDVI Y+SD 
Sbjct:   20 KLLQFQEDHRPPYWGTWSASGAPQVGGRRPFGHHEKLDYEVDSEAEWEEPEDEEGEDLSEDGQSDDEEGVSKGKDCLDYEDGWLAQDDVI-YNSDG 114
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: UPI00077FB8E6 (chromatin assembly factor 1 subunit A n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FB8E6)

HSP 1 Score: 80.5 bits (197), Expect = 9.130e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGALDYEVESDLEWEEEPEGEDLSGAEEEDDGNDALDYE 213
            KL+QFH+++RPPYWGT  ++ R + PR P   +   DY+V+SD EWE+E  GE LSG E+ED+G D  +YE
Sbjct:  425 KLIQFHENVRPPYWGTWRKKSRAIRPRNPFGQDDIFDYDVDSDDEWEQEEPGESLSGTEQEDEGEDVDNYE 495
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A2R5GMW1_9STRA (Chromatin assembly factor 1 subunit A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMW1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.730e-15
Identity = 40/88 (45.45%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGALDYEVESDLEWEEEPE-GEDLSGAEEEDDGNDALDYEDNWLVQDDVIEYDSDA 261
            KL  F ++ RPPY+GT  ++  +V  RRP   + ALDYEV+SDL+W+++P+  E L G++   + +  LDY+D WL++DD +EY SDA
Sbjct:  788 KLFHFGENRRPPYFGTFRKKSSKVSGRRPFAQDRALDYEVDSDLDWQDDPDDAESLGGSDAASEDDKELDYQDGWLLRDDEVEYASDA 875
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A7I0Z1V7_DANPL (chromatin assembly factor 1 subunit A-like n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A7I0Z1V7_DANPL)

HSP 1 Score: 72.8 bits (177), Expect = 4.280e-13
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGAL-DYEVESDLEWEEEPEGEDLSG-AEEEDDGNDALDYE 213
            KLL FH++ RPPYWGT  ++   + PRRP +T+  L DYEV+SD EWEEE EGE + G A   DD  +A +YE
Sbjct:  189 KLLSFHENRRPPYWGTWRKKSSSINPRRPFKTDNKLLDYEVDSDEEWEEEQEGESIDGSAAGSDDEQEADEYE 261
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A212FH17_DANPL (Uncharacterized protein n=2 Tax=Danaus TaxID=13036 RepID=A0A212FH17_DANPL)

HSP 1 Score: 72.8 bits (177), Expect = 4.660e-13
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGAL-DYEVESDLEWEEEPEGEDLSG-AEEEDDGNDALDYE 213
            KLL FH++ RPPYWGT  ++   + PRRP +T+  L DYEV+SD EWEEE EGE + G A   DD  +A +YE
Sbjct:  553 KLLSFHENRRPPYWGTWRKKSSSINPRRPFKTDNKLLDYEVDSDEEWEEEQEGESIDGSAAGSDDEQEADEYE 625
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: UPI0010409D24 (chromatin assembly factor 1 subunit A-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI0010409D24)

HSP 1 Score: 72.8 bits (177), Expect = 4.670e-13
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGALDYEVESDLEWEEEPEGEDLSG-AEEEDDGNDALDYE 213
            KLL F ++ RPPYWGT  ++   V PRRP   +  LDYEV+SD EWEEEP+GE + G A   DD +DA +YE
Sbjct:  629 KLLSFEENKRPPYWGTWRKKSASVKPRRPFGQDQKLDYEVDSDEEWEEEPDGESVDGSAAGSDDEHDADEYE 700
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A8B9HQ02_ASTMX (Chromatin assembly factor 1, subunit A (p150) n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9HQ02_ASTMX)

HSP 1 Score: 72.8 bits (177), Expect = 4.680e-13
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTE-GALDYEVESDLEWEEEPEGEDLSGAE 177
            KLLQFH++ RP YWGTCS++   + PR PLR +   LDYEV+SD EWEEE  GE LS +E
Sbjct:  491 KLLQFHENYRPAYWGTCSKKSNHISPRCPLRQDKDLLDYEVDSDDEWEEEEPGESLSHSE 550
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: UPI00067C7CF4 (chromatin assembly factor 1 subunit A n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067C7CF4)

HSP 1 Score: 72.4 bits (176), Expect = 6.390e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPL-RTEGALDYEVESDLEWEEEPEGEDLSGAEEEDDGNDALDYE 213
            KLL FH++ RPPYWGT  ++   V PRRP  + E  LDYEV+SD EWEEEP+GE ++G+    D  +A +YE
Sbjct:  589 KLLSFHENRRPPYWGTWRKKSAFVKPRRPFGQDEKQLDYEVDSDEEWEEEPDGESINGSAAGSDDEEADEYE 660
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: A0A6H5KVX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX8_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.500e-13
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLR--TEGALDYEVESDLEWEEEPEGEDLSGAEEEDDGNDALDYE--------DNWLVQDD 237
            KLLQFH   RPPYWGT S+   QV  RRPL   T+G L+Y+ +S+ +WEEE +GEDL  ++EE +  D LDY+        D WL QDD
Sbjct:  831 KLLQFHQDHRPPYWGTWSKNSSQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLL-SDEEVEPEDNLDYKARDQAAVVDGWLRQDD 918
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BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Match: D7G3C4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 6.500e-13
Identity = 45/89 (50.56%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 KLLQFHDSLRPPYWGTCSREPRQVGPRRPLR--TEGALDYEVESDLEWEEEPEGEDLSGAEEEDDGNDALDYE--------DNWLVQDD 237
            KLLQFH   RPPYWGT S+   QV  RRPL   T+G L+Y+ +S+ +WEEE +GEDL  ++EE +  D LDY+        D WL QDD
Sbjct:  826 KLLQFHQDHRPPYWGTWSKSSSQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLL-SDEEVEPEDNLDYKARNQAAVVDGWLRQDD 913
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104927.1053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XVB8_9STRA6.740e-1856.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI00077FB8E69.130e-1652.11chromatin assembly factor 1 subunit A n=1 Tax=Para... [more]
A0A2R5GMW1_9STRA1.730e-1545.45Chromatin assembly factor 1 subunit A n=1 Tax=Hond... [more]
A0A7I0Z1V7_DANPL4.280e-1353.42chromatin assembly factor 1 subunit A-like n=1 Tax... [more]
A0A212FH17_DANPL4.660e-1353.42Uncharacterized protein n=2 Tax=Danaus TaxID=13036... [more]
UPI0010409D244.670e-1354.17chromatin assembly factor 1 subunit A-like n=1 Tax... [more]
A0A8B9HQ02_ASTMX4.680e-1360.00Chromatin assembly factor 1, subunit A (p150) n=1 ... [more]
UPI00067C7CF46.390e-1352.78chromatin assembly factor 1 subunit A n=1 Tax=Amye... [more]
A0A6H5KVX8_9PHAE6.500e-1350.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3C4_ECTSI6.500e-1350.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104927contigM-pyrifera_M_contig104927:370..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog42099.EPrPV00000022158
Preferred nameCHAF1A
KEGG koko:K10750
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006338,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007346,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009555,GO:0009628,GO:0009888,GO:0009934,GO:0009987,GO:0010026,GO:0010212,GO:0010332,GO:0010389,GO:0010448,GO:0010449,GO:0010564,GO:0016043,GO:0019904,GO:0022402,GO:0022603,GO:0022607,GO:0022622,GO:0030154,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034728,GO:0035264,GO:0035266,GO:0035295,GO:0040007,GO:0042023,GO:0042393,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0045787,GO:0046483,GO:0048229,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051276,GO:0051716,GO:0051726,GO:0060429,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070087,GO:0070828,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080186,GO:0090304,GO:0090558,GO:0099402,GO:1901360,GO:1901576,GO:1901987,GO:1901990,GO:1902749,GO:1903047
EggNOG free text desc.Source PGD
EggNOG OGs1MG6D@121069,KOG4364@1,KOG4364@2759
COG Functional cat.B
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.8987522-CDS-M-pyrifera_M_contig104927:369..6301622815556.8987522-CDS-M-pyrifera_M_contig104927:369..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104927 370..630 +
1692277462.5073524-CDS-M-pyrifera_M_contig104927:369..6301692277462.5073524-CDS-M-pyrifera_M_contig104927:369..630Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104927 370..630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104927.1053.1prot_M-pyrifera_M_contig104927.1053.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104927 370..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104927.1053.1

>prot_M-pyrifera_M_contig104927.1053.1 ID=prot_M-pyrifera_M_contig104927.1053.1|Name=mRNA_M-pyrifera_M_contig104927.1053.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
KLLQFHDSLRPPYWGTCSREPRQVGPRRPLRTEGALDYEVESDLEWEEEP
EGEDLSGAEEEDDGNDALDYEDNWLVQDDVIEYDSDA
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mRNA from alignment at M-pyrifera_M_contig104927:370..630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104927.1053.1 ID=mRNA_M-pyrifera_M_contig104927.1053.1|Name=mRNA_M-pyrifera_M_contig104927.1053.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig104927:370..630+ (Macrocystis pyrifera P11B4 male)
AAGCTGCTGCAGTTCCACGACTCGCTCCGCCCGCCGTACTGGGGCACGTG
CAGCAGGGAGCCCCGGCAGGTGGGGCCGCGCCGCCCACTGCGCACCGAGG
GCGCGCTGGACTACGAGGTGGAGAGCGACCTGGAGTGGGAGGAGGAGCCG
GAGGGGGAGGACTTGTCCGGCGCGGAGGAGGAGGACGACGGGAACGACGC
GCTGGACTACGAGGACAACTGGCTGGTGCAGGACGACGTGATCGAGTACG
ACTCGGACGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104927:370..630+

>mRNA_M-pyrifera_M_contig104927.1053.1 ID=mRNA_M-pyrifera_M_contig104927.1053.1|Name=mRNA_M-pyrifera_M_contig104927.1053.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig104927:370..630+ (Macrocystis pyrifera P11B4 male)
AAGCTGCTGCAGTTCCACGACTCGCTCCGCCCGCCGTACTGGGGCACGTG
CAGCAGGGAGCCCCGGCAGGTGGGGCCGCGCCGCCCACTGCGCACCGAGG
GCGCGCTGGACTACGAGGTGGAGAGCGACCTGGAGTGGGAGGAGGAGCCG
GAGGGGGAGGACTTGTCCGGCGCGGAGGAGGAGGACGACGGGAACGACGC
GCTGGACTACGAGGACAACTGGCTGGTGCAGGACGACGTGATCGAGTACG
ACTCGGACGCGAAGCTGCTGCAGTTCCACGACTCGCTCCGCCCGCCGTAC
TGGGGCACGTGCAGCAGGGAGCCCCGGCAGGTGGGGCCGCGCCGCCCACT
GCGCACCGAGGGCGCGCTGGACTACGAGGTGGAGAGCGACCTGGAGTGGG
AGGAGGAGCCGGAGGGGGAGGACTTGTCCGGCGCGGAGGAGGAGGACGAC
GGGAACGACGCGCTGGACTACGAGGACAACTGGCTGGTGCAGGACGACGT
GATCGAGTACGACTCGGACGCG
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