mRNA_M-pyrifera_M_contig104926.1052.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104926.1052.1
Unique NamemRNA_M-pyrifera_M_contig104926.1052.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: A0A838T898_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=A0A838T898_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.920e-6
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  421 FYTMINNGDGTFGSPLATNTFD--GPSAVDAGDLDNDGDVDLVLSS--------NTDYNIYVYKNNGDGTF 603
            F+T INNGDGTFG P  T + +  G S +DA D+DNDGD+D VL+         N+   I++ KNNG GTF
Sbjct:  497 FHTAINNGDGTFG-PRQTWSMNACGWSDIDAFDMDNDGDLDAVLTEWLGCTNDPNSARRIFISKNNGSGTF 566
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: A0A820Q676_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820Q676_9BILA)

HSP 1 Score: 52.8 bits (125), Expect = 1.750e-5
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  397 VAIDEYSKFYTMINNGDGTF--GSPLATNTFDGPSAVDAGDLDNDGDVDLVLSSNTDYNIYVYKNNGDGTFSNHQGY 621
            + +D  S     +  G+GTF  GS  +T +   P ++  GDL+ND  +D+V+++    N+ V+   GDGTFSN + Y
Sbjct:   44 ITVDYSSNILIFLGYGNGTFVKGSTYSTGSGSRPLSITVGDLNNDNQLDIVVTNCLTDNVVVFSGEGDGTFSNQRTY 120
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: UPI00082D0A19 (T9SS type A sorting domain-containing protein n=1 Tax=Tamlana agarivorans TaxID=481183 RepID=UPI00082D0A19)

HSP 1 Score: 55.5 bits (132), Expect = 1.940e-5
Identity = 32/72 (44.44%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:  403 IDEYSKFYTMINNGDGTFG--SPLATNTFDG-PSAVDAGDLDNDGDVDLVLSSNTDYNIYVYKNNGDGTFSN 609
            ID  +K   + NNGD TFG  S    NT+   P+   AGD+D DGD+D+++SS     IY+ KN+G G F+N
Sbjct:  510 IDRINKIAWIKNNGDLTFGDLSVFTDNTYGFIPNKYTAGDIDRDGDIDIIVSSKNYSRIYLLKNDGLGNFTN 581
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: A0A356KWZ5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KWZ5_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.480e-5
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  412 YSKFYTMINNGDGTFGSPLATNTFDGPSAVDAGDLDNDGDVDLVLSSNTDYNIYVYKNNGDGTFSNH 612
            + K Y  +N+G G FGS +  + F G    D GDLD DGD DLVL+ ++ +  YV  N+G GT ++H
Sbjct:  549 FKKLYVSLNDGTGVFGSFVGIHNF-GHLFADQGDLDGDGDTDLVLAGSSSF--YVLMNDGGGTLTHH 612
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: U5QK37_9CYAN (Uncharacterized protein n=1 Tax=Gloeobacter kilaueensis JS1 TaxID=1183438 RepID=U5QK37_9CYAN)

HSP 1 Score: 53.9 bits (128), Expect = 6.320e-5
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:  397 VAIDEYSKFYTMINNGDGTFGSPLATNTFDGPSAVDAGDLDNDGDVDLVLS 549
            V +   S    ++N GDGTF +P   +T DG S++ AGDLD DGDVDLV S
Sbjct:  637 VTVSNGSIVSVLLNRGDGTFDAPAIFHTIDGNSSISAGDLDGDGDVDLVTS 687
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BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Match: A0A1G1TID1_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter coccineus TaxID=1908235 RepID=A0A1G1TID1_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 6.900e-5
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:  433 INNGDGTFGSPLATNTFDGPSAVDAGDLDNDGDVDLVLSS---NTDYNIYVYKNNGDGTFSNHQGYENLG 633
            +N+G GTFGSP A      P+++  GD+DNDGD+DLV+ +   NT   + V  N+G+GTF + Q Y   G
Sbjct:  187 LNDGRGTFGSPRAVEVGISPTSLALGDMDNDGDLDLVVGAGIQNTSA-LNVALNDGEGTFGSPQSYSIFG 255
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104926.1052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A838T898_9BACT5.920e-649.30T9SS type A sorting domain-containing protein n=1 ... [more]
A0A820Q676_9BILA1.750e-535.06Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
UPI00082D0A191.940e-544.44T9SS type A sorting domain-containing protein n=1 ... [more]
A0A356KWZ5_9BACT3.480e-543.28Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
U5QK37_9CYAN6.320e-550.98Uncharacterized protein n=1 Tax=Gloeobacter kilaue... [more]
A0A1G1TID1_9BACT6.900e-544.29Uncharacterized protein n=1 Tax=Hymenobacter cocci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104926contigM-pyrifera_M_contig104926:2..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.8669734-CDS-M-pyrifera_M_contig104926:1..6401622815556.8669734-CDS-M-pyrifera_M_contig104926:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104926 2..640 +
1692277462.4932308-CDS-M-pyrifera_M_contig104926:1..6401692277462.4932308-CDS-M-pyrifera_M_contig104926:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104926 2..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104926.1052.1prot_M-pyrifera_M_contig104926.1052.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104926 2..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104926.1052.1

>prot_M-pyrifera_M_contig104926.1052.1 ID=prot_M-pyrifera_M_contig104926.1052.1|Name=mRNA_M-pyrifera_M_contig104926.1052.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
DSDSTYATKVNLSVGDSPTNFTIADLDGDGDEDMIMSDNDSYYVKVLYND
GEGSFDSGTNFSLNDYSYTVTAGDLDHDGDLDIVVGISDNVSVLLNDGTG
VLSAPADYSIGTVQNVIDVVTTDINGDGELDIVAIDEYSKFYTMINNGDG
TFGSPLATNTFDGPSAVDAGDLDNDGDVDLVLSSNTDYNIYVYKNNGDGT
FSNHQGYENLGYF
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mRNA from alignment at M-pyrifera_M_contig104926:2..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104926.1052.1 ID=mRNA_M-pyrifera_M_contig104926.1052.1|Name=mRNA_M-pyrifera_M_contig104926.1052.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=639bp|location=Sequence derived from alignment at M-pyrifera_M_contig104926:2..640+ (Macrocystis pyrifera P11B4 male)
GATAGCGATAGTACTTATGCAACGAAAGTAAATTTATCTGTAGGCGATTC
TCCAACAAATTTTACGATTGCCGATTTAGACGGTGACGGTGATGAAGATA
TGATAATGAGTGATAATGATAGTTACTATGTAAAAGTACTATACAATGAT
GGTGAAGGCAGTTTTGATTCCGGCACCAATTTCTCATTGAATGATTATTC
ATATACAGTTACGGCAGGTGATTTAGACCACGATGGAGATCTGGATATAG
TAGTGGGTATTTCTGATAACGTGTCTGTGTTGTTGAATGATGGAACTGGT
GTACTATCTGCTCCAGCAGATTATTCAATAGGTACAGTCCAAAATGTTAT
TGATGTAGTAACGACAGATATCAATGGGGATGGAGAATTAGATATAGTTG
CTATTGATGAATACAGCAAATTCTACACTATGATAAATAATGGAGATGGG
ACATTCGGGTCTCCACTGGCAACTAATACCTTTGACGGACCGAGTGCAGT
GGATGCAGGGGACTTAGATAATGACGGGGATGTCGACCTAGTTCTTTCAA
GTAATACCGATTATAATATCTATGTATATAAAAATAATGGAGATGGGACA
TTTTCAAATCATCAGGGGTATGAAAATTTAGGCTATTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104926:2..640+

>mRNA_M-pyrifera_M_contig104926.1052.1 ID=mRNA_M-pyrifera_M_contig104926.1052.1|Name=mRNA_M-pyrifera_M_contig104926.1052.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig104926:2..640+ (Macrocystis pyrifera P11B4 male)
GATAGCGATAGTACTTATGCAACGAAAGTAAATTTATCTGTAGGCGATTC
TCCAACAAATTTTACGATTGCCGATTTAGACGGTGACGGTGATGAAGATA
TGATAATGAGTGATAATGATAGTTACTATGTAAAAGTACTATACAATGAT
GGTGAAGGCAGTTTTGATTCCGGCACCAATTTCTCATTGAATGATTATTC
ATATACAGTTACGGCAGGTGATTTAGACCACGATGGAGATCTGGATATAG
TAGTGGGTATTTCTGATAACGTGTCTGTGTTGTTGAATGATGGAACTGGT
GTACTATCTGCTCCAGCAGATTATTCAATAGGTACAGTCCAAAATGTTAT
TGATGTAGTAACGACAGATATCAATGGGGATGGAGAATTAGATATAGTTG
CTATTGATGAATACAGCAAATTCTACACTATGATAAATAATGGAGATGGG
ACATTCGGGTCTCCACTGGCAACTAATACCTTTGACGGACCGAGTGCAGT
GGATGCAGGGGACTTAGATAATGACGGGGATGTCGACCTAGTTCTTTCAA
GTAATACCGATTATAATATCTATGTATATAAAAATAATGGAGATGGGACA
TTTTCAAATCATCAGGGGTATGAAAATTTAGGCTATTTCGATAGCGATAG
TACTTATGCAACGAAAGTAAATTTATCTGTAGGCGATTCTCCAACAAATT
TTACGATTGCCGATTTAGACGGTGACGGTGATGAAGATATGATAATGAGT
GATAATGATAGTTACTATGTAAAAGTACTATACAATGATGGTGAAGGCAG
TTTTGATTCCGGCACCAATTTCTCATTGAATGATTATTCATATACAGTTA
CGGCAGGTGATTTAGACCACGATGGAGATCTGGATATAGTAGTGGGTATT
TCTGATAACGTGTCTGTGTTGTTGAATGATGGAACTGGTGTACTATCTGC
TCCAGCAGATTATTCAATAGGTACAGTCCAAAATGTTATTGATGTAGTAA
CGACAGATATCAATGGGGATGGAGAATTAGATATAGTTGCTATTGATGAA
TACAGCAAATTCTACACTATGATAAATAATGGAGATGGGACATTCGGGTC
TCCACTGGCAACTAATACCTTTGACGGACCGAGTGCAGTGGATGCAGGGG
ACTTAGATAATGACGGGGATGTCGACCTAGTTCTTTCAAGTAATACCGAT
TATAATATCTATGTATATAAAAATAATGGAGATGGGACATTTTCAAATCA
TCAGGGGTATGAAAATTTAGGCTATTTC
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