mRNA_M-pyrifera_M_contig104921.1051.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104921.1051.1
Unique NamemRNA_M-pyrifera_M_contig104921.1051.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: D7FYA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYA5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.010e-20
Identity = 45/51 (88.24%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAMEE 153
            M+TIDWE+QQL+VFNALKEGN+AL +LHEEMPLDKVEELMADTAESIAMEE
Sbjct:   91 MDTIDWETQQLQVFNALKEGNVALNKLHEEMPLDKVEELMADTAESIAMEE 141
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A4D9D5S7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5S7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.230e-8
Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   10 IDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAMEE 153
            I+WE +QL+VF+ALK GN AL+ +H+ + L++V++LMADTA+SIA E+
Sbjct:  101 IEWEREQLQVFDALKSGNQALEAIHKIVSLEEVDKLMADTADSIAYEQ 148
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A484DZ78_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZ78_BRELC)

HSP 1 Score: 56.2 bits (134), Expect = 7.120e-8
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIA 144
            ++T++WE+QQLKVF  LK GNL L  +H+EM ++ VEELM +T E+ A
Sbjct:  102 LDTVEWETQQLKVFEGLKAGNLILNAIHKEMTVEAVEELMLETEEAQA 149
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A836CK96_9STRA (Snf7-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK96_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.060e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAMEE 153
            +ET++WE  Q +V  AL EG  AL  LHE MP++ VE+LMADT E++  E+
Sbjct:   98 LETVEWEGHQAQVLAALSEGTKALNSLHEAMPIEDVEQLMADTQEALEYEQ 148
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A7S2V777_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V777_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.020e-7
Identity = 21/51 (41.18%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAMEE 153
            ++T++WE++ +++ NA++EG  AL ++HE + ++K+EE+MADT E+ A+ E
Sbjct:   84 VQTVEWETENVRIVNAMQEGTAALNKIHETLTVEKIEEVMADTEEAFAVAE 134
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A7S2BZN2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZN2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.300e-7
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAMEE 153
            ++TI WE++ +KV  AL+EGN AL  +H  M +DKVE LM +TAE+IA+++
Sbjct:  109 VQTIQWETETMKVVEALQEGNKALDAIHSVMSVDKVEALMDETAEAIAVQQ 159
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A0P1AN92_PLAHL (Hydroxymethylglutaryl-mitochondrial n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AN92_PLAHL)

HSP 1 Score: 54.3 bits (129), Expect = 2.350e-7
Identity = 25/48 (52.08%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIA 144
            ++T++WE+QQL+VF  LK  NL L  +H+EM ++ VEELM +TAE+ A
Sbjct:  105 LDTVEWETQQLQVFEGLKASNLILNAIHKEMTVEAVEELMLETAEAQA 152
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A0W8DKC4_PHYNI (Hydroxymethylglutaryl-CoA lyase, mitochondrial n=2 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKC4_PHYNI)

HSP 1 Score: 53.1 bits (126), Expect = 8.710e-7
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIA 144
            ++T++WE+QQL+VF  LK GN  L  +H+EM ++ VEELM +T E+ A
Sbjct:  466 LDTVEWETQQLQVFEGLKAGNSILNSIHKEMTVESVEELMLETEEAQA 513
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BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: A0A8K1CIZ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIZ2_PYTOL)

HSP 1 Score: 53.1 bits (126), Expect = 8.720e-7
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAES 138
            ++T++WESQQLKVF  LK GN  L  +H+EM ++ VE LM +T E+
Sbjct:  108 LDTVEWESQQLKVFEGLKAGNSVLDAIHKEMSVEAVENLMLETEEA 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Match: W2QKK3_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QKK3_PHYPN)

HSP 1 Score: 52.8 bits (125), Expect = 8.960e-7
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIA 144
            ++T++WE+QQL+VF  LK GN  L  +H+EM ++ VEELM +T E+ A
Sbjct:  106 LDTVEWETQQLQVFEGLKAGNSILNAIHKEMTVESVEELMLETEEAQA 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104921.1051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYA5_ECTSI1.010e-2088.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D5S7_9STRA4.230e-856.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A484DZ78_BRELC7.120e-854.17Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A836CK96_9STRA9.060e-850.98Snf7-domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2V777_9STRA2.020e-741.18Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2BZN2_9STRA2.300e-750.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0P1AN92_PLAHL2.350e-752.08Hydroxymethylglutaryl-mitochondrial n=1 Tax=Plasmo... [more]
A0A0W8DKC4_PHYNI8.710e-750.00Hydroxymethylglutaryl-CoA lyase, mitochondrial n=2... [more]
A0A8K1CIZ2_PYTOL8.720e-752.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2QKK3_PHYPN8.960e-750.00Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104921contigM-pyrifera_M_contig104921:155..307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog2880.D7FYA5
Preferred nameCHMP6
KEGG rclassRC00502,RC00503,RC01118,RC01946
KEGG koko:K01640,ko:K07204,ko:K08675,ko:K12195,ko:K16302
KEGG TC9.A.40.3
KEGG ReactionR01360,R08090
KEGG Pathwayko00072,ko00280,ko00281,ko00650,ko01100,ko04136,ko04138,ko04140,ko04144,ko04146,ko04150,ko04151,ko04152,ko04211,ko04213,ko04217,ko04714,ko04910,ko05206,map00072,map00280,map00281,map00650,map01100,map04136,map04138,map04140,map04144,map04146,map04150,map04151,map04152,map04211,map04213,map04217,map04714,map04910,map05206
KEGG ModuleM00036,M00088,M00412
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005768,GO:0005770,GO:0005829,GO:0005886,GO:0006469,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0006997,GO:0007005,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007080,GO:0007175,GO:0007176,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008593,GO:0009056,GO:0009057,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010256,GO:0010469,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019058,GO:0019068,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0023051,GO:0023057,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031410,GO:0031974,GO:0031982,GO:0032268,GO:0032269,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0033673,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042058,GO:0042059,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042623,GO:0042886,GO:0043086,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043328,GO:0043549,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045184,GO:0045324,GO:0045859,GO:0045936,GO:0046618,GO:0046755,GO:0046907,GO:0047485,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050000,GO:0050730,GO:0050732,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051338,GO:0051348,GO:0051503,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0060255,GO:0061024,GO:0061097,GO:0061099,GO:0061919,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:0140096,GO:1901184,GO:1901185,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1903047,GO:1904669,GO:1904895,GO:1904902,GO:2000272
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG2910@1,KOG2910@2759
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-24_003200.1
EC3.4.21.53,4.1.3.4
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03029,ko04131,ko04147
Exons1
Model size153
Cds size153
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.8333588-CDS-M-pyrifera_M_contig104921:154..3071622815556.8333588-CDS-M-pyrifera_M_contig104921:154..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104921 155..307 +
1692277462.4818757-CDS-M-pyrifera_M_contig104921:154..3071692277462.4818757-CDS-M-pyrifera_M_contig104921:154..307Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104921 155..307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104921.1051.1prot_M-pyrifera_M_contig104921.1051.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104921 155..307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104921.1051.1

>prot_M-pyrifera_M_contig104921.1051.1 ID=prot_M-pyrifera_M_contig104921.1051.1|Name=mRNA_M-pyrifera_M_contig104921.1051.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=51bp
METIDWESQQLKVFNALKEGNLALQQLHEEMPLDKVEELMADTAESIAME
E
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mRNA from alignment at M-pyrifera_M_contig104921:155..307+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104921.1051.1 ID=mRNA_M-pyrifera_M_contig104921.1051.1|Name=mRNA_M-pyrifera_M_contig104921.1051.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=153bp|location=Sequence derived from alignment at M-pyrifera_M_contig104921:155..307+ (Macrocystis pyrifera P11B4 male)
ATGGAGACGATCGATTGGGAGTCGCAGCAGCTGAAGGTTTTTAACGCGCT
GAAGGAGGGCAACTTGGCATTGCAGCAGCTTCACGAGGAGATGCCGCTGG
ACAAGGTCGAGGAGCTGATGGCGGACACCGCAGAGTCGATCGCGATGGAA
GAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104921:155..307+

>mRNA_M-pyrifera_M_contig104921.1051.1 ID=mRNA_M-pyrifera_M_contig104921.1051.1|Name=mRNA_M-pyrifera_M_contig104921.1051.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig104921:155..307+ (Macrocystis pyrifera P11B4 male)
ATGGAGACGATCGATTGGGAGTCGCAGCAGCTGAAGGTTTTTAACGCGCT
GAAGGAGGGCAACTTGGCATTGCAGCAGCTTCACGAGGAGATGCCGCTGG
ACAAGGTCGAGGAGCTGATGGCGGACACCGCAGAGTCGATCGCGATGGAA
GAGATGGAGACGATCGATTGGGAGTCGCAGCAGCTGAAGGTTTTTAACGC
GCTGAAGGAGGGCAACTTGGCATTGCAGCAGCTTCACGAGGAGATGCCGC
TGGACAAGGTCGAGGAGCTGATGGCGGACACCGCAGAGTCGATCGCGATG
GAAGAG
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