mRNA_M-pyrifera_M_contig10491.1050.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10491.1050.1
Unique NamemRNA_M-pyrifera_M_contig10491.1050.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A6H5KTG8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTG8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.140e-60
Identity = 93/96 (96.88%), Postives = 96/96 (100.00%), Query Frame = 1
Query:    1 LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK 288
            LVQTACYGVRVYTNTSWLANHVDT+ATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPS+FHGN+YANAFVHYKPK
Sbjct:  362 LVQTACYGVRVYTNTSWLANHVDTKATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSTFHGNYYANAFVHYKPK 457          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A835YWU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWU1_9STRA)

HSP 1 Score: 161 bits (408), Expect = 9.800e-46
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKP 285
            LV T+CYG+R YT  SWLANHVDTRATH +S I+ VDQ+V +DWPL I+DHAGND+NITM PRD+VLYESATCVHGRPS+F G FYAN F+HYKP
Sbjct:  360 LVSTSCYGIRAYTRGSWLANHVDTRATHTISAIINVDQEVNKDWPLNIFDHAGNDHNITMAPRDMVLYESATCVHGRPSTFDGQFYANMFIHYKP 454          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A7S2UT49_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT49_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.130e-32
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   10 TACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK 288
            TACYG+RVY   + L  HVD  +THA+SVI+ VDQDVEE W L IYDH+G+ +N+TM P D+VLYESA+C HGRP    GN+Y N FVHY+PK
Sbjct:  378 TACYGIRVYQEGAELRGHVDRISTHAISVIINVDQDVEEPWYLHIYDHSGSAHNVTMAPGDMVLYESASCQHGRPFPLKGNYYTNTFVHYRPK 470          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A7S2THP0_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2THP0_9EUKA)

HSP 1 Score: 122 bits (305), Expect = 2.490e-31
Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK 288
            L  T  YG+RVY N ++L NHVD  ATH VS IM +    +  WPL IYDH GN++NIT+ P ++VLYESATCVHGRPS F G +Y NAF H++PK
Sbjct:  233 LEHTDLYGMRVYKNNTFLENHVDRVATHVVSAIMHIADKQDIPWPLNIYDHYGNEHNITISPGEMVLYESATCVHGRPSLFQGEYYVNAFAHFRPK 328          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A7S3H7N7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7N7_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.410e-30
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 1
Query:   10 TACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKP 285
            T+ YG+R YTN S L  HVDT  TH VS I+ VDQDV+EDWPL+I DH  N++NI MKP D+VLYESA  +HGRP  F G  Y N F+HYKP
Sbjct:  343 TSIYGIRKYTNGSVLRMHVDTVNTHVVSAIINVDQDVDEDWPLLILDHQDNEHNIIMKPGDMVLYESAKLLHGRPEMFKGRHYDNIFIHYKP 434          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A7R9Z896_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z896_9CHLO)

HSP 1 Score: 117 bits (293), Expect = 7.270e-29
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:    1 LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYK 282
            L  TA YGVR YT  +WL NHVD R TH +S I+ +DQDV+E WPL I DHAG  +NITM P D+++YE ATC HGR    +G + AN F+H+K
Sbjct:  419 LEPTAMYGVRAYTRGAWLKNHVDMRGTHIISAIVNIDQDVDEPWPLEIRDHAGQLHNITMVPGDIIMYEGATCEHGRQYPLNGRWLANTFIHFK 512          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A7S4KHC4_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KHC4_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 4.770e-28
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   10 TACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK 288
            TA YG+R Y+N S+L NHVD  ATHAVSVI+QVDQ V +DW L ++ H G    + M P  +VLYESA+ +HGRP   +G +YAN FVH++PK
Sbjct:  256 TALYGIRTYSNESYLLNHVDRSATHAVSVIIQVDQKVTDDWLLEVHGHDGKVEELPMAPGQMVLYESASVIHGRPKPLNGEYYANVFVHFRPK 348          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: W7TBS5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBS5_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.420e-27
Identity = 51/91 (56.04%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   10 TACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYK 282
            T+CYG+R+Y N SWL  HVDT  TH +S IM VDQDVEEDW L   DH  N + +T++P D + YESA+ +HGRP    G  +ANAFVH+K
Sbjct:  366 TSCYGIRIYHNGSWLREHVDTGDTHIISAIMNVDQDVEEDWLLTFIDHNDNRHFVTLEPGDALYYESASGLHGRPIPLKGKLFANAFVHFK 456          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: UPI000C7889A2 (uncharacterized protein LOC111713088 n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C7889A2)

HSP 1 Score: 107 bits (266), Expect = 1.360e-26
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    1 LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK 288
            LV TA YG+R YT  +WL  H+D   TH VS I+ + QDV+EDWPL I DH GN Y I + P D+V YESA  +H R   F G  Y N FVHY P+
Sbjct:   81 LVGTAVYGLRKYTRGAWLHAHLDHLRTHVVSAILNIAQDVDEDWPLQIEDHQGNKYEIILAPGDMVWYESAKLIHARIKPFKGRSYENIFVHYMPR 176          
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Match: A0A812VS92_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VS92_SYMMI)

HSP 1 Score: 107 bits (268), Expect = 1.630e-26
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   10 TACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYDHAGNDYNITMKPRDLVLYESATCVHGRPSS-FHGNFYANAFVHYKP 285
            T+ YG+R YTN S L  HVDTRATH VS I+ VDQDV+E W L+I DHA  ++ + M+P D++LYESA  +HGRP+   +G  Y N F+HYKP
Sbjct:  188 TSIYGIRKYTNNSVLRMHVDTRATHVVSAIINVDQDVQEPWKLLILDHAYEEHWVEMQPGDMLLYESAKLLHGRPAEPMNGRRYENLFIHYKP 280          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10491.1050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTG8_9PHAE1.140e-6096.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YWU1_9STRA9.800e-4674.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UT49_9STRA1.130e-3262.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2THP0_9EUKA2.490e-3158.33Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3H7N7_9STRA1.410e-3061.96Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9Z896_9CHLO7.270e-2956.38Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S4KHC4_9EUKA4.770e-2855.91Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
W7TBS5_9STRA4.420e-2756.04Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
UPI000C7889A21.360e-2653.13uncharacterized protein LOC111713088 n=1 Tax=Euryt... [more]
A0A812VS92_SYMMI1.630e-2655.91Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10491contigM-pyrifera_M_contig10491:7749..8758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue1.4e-49
Seed eggNOG ortholog2880.D8LR21
Hectar predicted targeting categoryother localisation
EggNOG OGs2DE90@1,2S5PQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.7711017-CDS-M-pyrifera_M_contig10491:7748..79221622815556.7711017-CDS-M-pyrifera_M_contig10491:7748..7922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10491 7749..7922 -
1692277462.4626293-CDS-M-pyrifera_M_contig10491:7748..79221692277462.4626293-CDS-M-pyrifera_M_contig10491:7748..7922Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10491 7749..7922 -
1622815556.783983-CDS-M-pyrifera_M_contig10491:8644..87581622815556.783983-CDS-M-pyrifera_M_contig10491:8644..8758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10491 8645..8758 -
1692277462.47321-CDS-M-pyrifera_M_contig10491:8644..87581692277462.47321-CDS-M-pyrifera_M_contig10491:8644..8758Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10491 8645..8758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10491.1050.1prot_M-pyrifera_M_contig10491.1050.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10491 7749..8758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10491.1050.1

>prot_M-pyrifera_M_contig10491.1050.1 ID=prot_M-pyrifera_M_contig10491.1050.1|Name=mRNA_M-pyrifera_M_contig10491.1050.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
LVQTACYGVRVYTNTSWLANHVDTRATHAVSVIMQVDQDVEEDWPLMIYD
HAGNDYNITMKPRDLVLYESATCVHGRPSSFHGNFYANAFVHYKPK
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mRNA from alignment at M-pyrifera_M_contig10491:7749..8758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10491.1050.1 ID=mRNA_M-pyrifera_M_contig10491.1050.1|Name=mRNA_M-pyrifera_M_contig10491.1050.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1010bp|location=Sequence derived from alignment at M-pyrifera_M_contig10491:7749..8758- (Macrocystis pyrifera P11B4 male)
CTGGTCCAGACGGCCTGCTACGGGGTGCGCGTGTACACCAACACGAGCTG GTTGGCGAACCACGTGGACACGCGTGCAACGCACGCCGTATCGGTCATCA TGCAGGTCGACCAGGTGAGCGCTACTAGCAAAAGAAGAGGAGGCGGGCAG AGAGCAGGCGGAAACGACCAAACAAGCGGGGAAACCAAACGCGCGAAGAA CTCAACCGCCGCGCGCCCTTTTTTTTCGCTCTGTTTGTTTGCTTGTTCGT TTTCGGCATATCGTTTCTTAGCATTTTCCGCGGTTTCCCTTTTTTTTTGT CTCGCTTGGTGGTGCTTGTTTGATCGCATACCACAGACTCGCGTGGGTCG GATGTTGAAAGAGGATGGCAACGGAATCGATGGTTTTGATCTACGGGCCG CCAGATTGAACAATTACACACATCGGGCTGATCATCGGCTCCCAGTGCAA ACGATCTACAGATCTTTCAGGGCAGATAGATAGATCCCTGATCTGTATGA TCTGTATGATCTGTATGATCTAGCTCATGTTGCCTGGTGGGAGCCGTATC ATCTGCGTAATCTACAGTAGGACATGTTTCCTGGGTTGGATCTGTACTCT GCAGATCCTGCTCACCGTCTCAGAACAACCGGTTGGGGTCTGGATGATCT AAAATCGTGAACTGTCCAACGTTTGAACAGTCGTCCACTATTTTCTCTTG TTACACGCGTATAGTGTCTCGAGCCGCGTCCTGATGTCCCTTGACGAGAA GAGTCAATCCCCCCCCCCGTCCCCCTTCCCCTTCCTCCCCGCGCGCGCCC CGCCTCGGCACGAAACGAAACCTTTGTGCGACTCAGGACGTCGAGGAAGA CTGGCCGCTGATGATCTACGACCACGCGGGCAACGACTACAATATCACGA TGAAGCCGCGAGACTTGGTCCTTTACGAGAGCGCGACGTGCGTGCACGGG CGACCATCGTCATTCCACGGAAATTTCTACGCAAACGCCTTCGTTCACTA CAAACCCAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10491:7749..8758-

>mRNA_M-pyrifera_M_contig10491.1050.1 ID=mRNA_M-pyrifera_M_contig10491.1050.1|Name=mRNA_M-pyrifera_M_contig10491.1050.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig10491:7749..8758- (Macrocystis pyrifera P11B4 male)
CTGGTCCAGACGGCCTGCTACGGGGTGCGCGTGTACACCAACACGAGCTG
GTTGGCGAACCACGTGGACACGCGTGCAACGCACGCCGTATCGGTCATCA
TGCAGGTCGACCAGCTGGTCCAGACGGCCTGCTACGGGGTGCGCGTGTAC
ACCAACACGAGCTGGTTGGCGAACCACGTGGACACGCGTGCAACGCACGC
CGTATCGGTCATCATGCAGGTCGACCAGGACGTCGAGGAAGACTGGCCGC
TGATGATCTACGACCACGCGGGCAACGACTACAATATCACGATGAAGCCG
CGAGACTTGGTCCTTTACGAGAGCGCGACGTGCGTGCACGGGCGACCATC
GTCATTCCACGGAAATTTCTACGCAAACGCCTTCGTTCACTACAAACCCA
AGGACGTCGAGGAAGACTGGCCGCTGATGATCTACGACCACGCGGGCAAC
GACTACAATATCACGATGAAGCCGCGAGACTTGGTCCTTTACGAGAGCGC
GACGTGCGTGCACGGGCGACCATCGTCATTCCACGGAAATTTCTACGCAA
ACGCCTTCGTTCACTACAAACCCAAG
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