mRNA_M-pyrifera_M_contig104868.1047.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104868.1047.1
Unique NamemRNA_M-pyrifera_M_contig104868.1047.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A6I6AGV3_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AGV3_9PLAN)

HSP 1 Score: 322 bits (824), Expect = 7.310e-107
Identity = 196/213 (92.02%), Postives = 196/213 (92.02%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCSTGAXXXXXXXXXXXXVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSDDDLFGSPDNKAFKPTPD 639
            AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCSTGAXXXXXXXXXXXXVSYPPASASTP       TNGAKVPEPREIEST PKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXX         KKSDDDLFGSPDNKAFKPTPD
Sbjct:  105 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCSTGAXXXXXXXXXXXXVSYPPASASTPXXXXXXXTNGAKVPEPREIESTSPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXX---------KKSDDDLFGSPDNKAFKPTPD 308          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A518AB14_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AB14_9PLAN)

HSP 1 Score: 240 bits (612), Expect = 7.790e-75
Identity = 174/215 (80.93%), Postives = 185/215 (86.05%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYAST-VGYGPAAGCCSPCGMGGCSTGAXXXXXXXXXXXXVSYPPASASTPTPEPNN-TTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSDDDLFGSPDNKAFKPTPD 639
            AAYRWYLINNPQAVGVSYR+FNGG NMYAS   GY P+ GCCSPCGMGGCSTGAXXXXXXXXXXXXVSY P+SASTPTP+PN+ TT+G  VPEPREIESTPPKTYAEEPMNP N    VEDSGFGERRYDRKTPMDTPMPG EA+DLF++PLKRDA  S           XXXXXXXXXXXXXXXXXXXXXXX KKSD+DLFGSP+NKAFKPTPD
Sbjct:  101 AAYRWYLINNPQAVGVSYRSFNGG-NMYASNYAGYAPS-GCCSPCGMGGCSTGAXXXXXXXXXXXXVSYSPSSASTPTPDPNSKTTSGGTVPEPREIESTPPKTYAEEPMNPEN---KVEDSGFGERRYDRKTPMDTPMPGGEAKDLFEQPLKRDA--SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKSDEDLFGSPNNKAFKPTPD 308          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A517WRK7_9PLAN (Uncharacterized protein n=4 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WRK7_9PLAN)

HSP 1 Score: 191 bits (486), Expect = 3.400e-56
Identity = 122/215 (56.74%), Postives = 142/215 (66.05%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCSTGAXXXXXXXXXXXXVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSDDDLFG--SPDNKAFKPTPD 639
            AAYRWYLINNPQ VGVSYRNF GG +   +   YGP  GCCSPCG+GGC+TGA   XXXXXXXX VSY PA A+TPTP+P    +G KVPEPREIEST PKT+A++PM PG    NVEDSGFG RRY+R +PMDTPMP +E++D+F+ PLKR  +E+PMPG                               +K  DD FG  S   KAFKPTPD
Sbjct:  100 AAYRWYLINNPQVVGVSYRNFGGGNSYGFAGAAYGP--GCCSPCGIGGCATGACGSXXXXXXXX-VSYNPAGANTPTPDP---ASGKKVPEPREIESTTPKTFADDPMPPGESKSNVEDSGFGARRYER-SPMDTPMPKSESKDVFEVPLKRGGSETPMPGGGT---------------------KLPEFGTEKKQDDFFGNESDKTKAFKPTPD 286          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A518IHC0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IHC0_9PLAN)

HSP 1 Score: 181 bits (458), Expect = 7.750e-52
Identity = 132/222 (59.46%), Postives = 153/222 (68.92%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCS-----TGAXXXXXXXXXXXXVSYPP----ASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSDDDLFGSPDNKAFKPTPD 639
            AAYRWYLINNPQ VGVSY +F GG +   + V YGP  G C PCGMGGC      T  XXXXXXXXXXX V+Y P    ASASTPTP+PN    G KVP PR++E+TPPKTY+E+PM P N   ++EDSGFG RRY+  +PMDTPMP NEA+DLF+ P+K + TESPMP +   PA                XXXXXXXX  KSDDD FG+ +NKAFKPTPD
Sbjct:  100 AAYRWYLINNPQVVGVSYNSFGGGSSTQFAGVAYGPT-GNCGPCGMGGCGIXXXXTXXXXXXXXXXXXXGVNYNPVANPASASTPTPDPNA---GGKVPTPRDVENTPPKTYSEKPMAPENKEESIEDSGFGARRYN-PSPMDTPMPKNEAKDLFETPIKGNETESPMPEAK--PA-----------LPDFGXXXXXXXXXXKSDDDFFGTGENKAFKPTPD 303          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A6BZH8_9PLAN (Uncharacterized protein n=8 Tax=Planctomycetaceae TaxID=126 RepID=A6BZH8_9PLAN)

HSP 1 Score: 174 bits (440), Expect = 4.030e-49
Identity = 127/220 (57.73%), Postives = 140/220 (63.64%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGY-GPAAGCCSPCGMGGC-----STGAXXXXXXXXXXXXVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSDDDLFG-SPDNKAFKPTPD 639
            AAYRWYL+NNPQAVGVSYRNF+GG N YAST  Y GP    C  CGMGG      ST  XXXXXXXXXXXXVSY PA+ASTPTP+PN    G  VP PRE+EST PKT+A++PMN   P   VEDSGF +RRYDR     TPMP NEAEDLFK PL RD  E PMPG+   PA                        +K+  +DLFG S    AFKPTPD
Sbjct:  103 AAYRWYLLNNPQAVGVSYRNFSGG-NAYASTGSYYGPVG--CGSCGMGGXXXXXXSTXXXXXXXXXXXXXXVSYNPATASTPTPDPNA---GGTVPPPREVESTTPKTFADDPMNSRKPDPGVEDSGFEQRRYDRSPMNSTPMPKNEAEDLFKAPLNRDVEELPMPGAK--PATPANPGFERSQPDFGPE-------KKEESNDLFGGSNSTDAFKPTPD 307          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A2E2C472_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C472_9PLAN)

HSP 1 Score: 159 bits (403), Expect = 1.190e-43
Identity = 120/221 (54.30%), Postives = 139/221 (62.90%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGY-GPAAGCCSPCGMGGC-----STGAXXXXXXXXXXXXVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSD-DDLFGSPDNK-AFKPTPD 639
            AAYRWYL+NNPQAVGVSYRNF+GG   YAST  Y GP    C  CGMG       +T  XXXXXXXXXXX VSY PA+ASTPTP+PN+   G  VP PRE+EST PKT+A+EPMN GNPG  VEDSGF +RRYDR     TPMP +EA DLF+ P+K +    P+P  +NP                          EKK D +DLFG  ++  AFK TPD
Sbjct:  102 AAYRWYLLNNPQAVGVSYRNFSGG-TAYASTGSYYGPVG--CGSCGMGXXXXXXXATXXXXXXXXXXXXXGVSYNPATASTPTPDPNS---GNPVPPPREVESTTPKTFADEPMNSGNPGPGVEDSGFEQRRYDRSPMNSTPMPKDEANDLFQPPVKPEGETQPVP-RANP---------IVPENTRPERSQPDFGPEKKEDSNDLFGGGNSTDAFKVTPD 306          
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Match: A0A3C0ABF4_9PLAN (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3C0ABF4_9PLAN)

HSP 1 Score: 153 bits (386), Expect = 5.420e-42
Identity = 117/225 (52.00%), Postives = 135/225 (60.00%), Query Frame = 1
Query:    1 AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGC----------STGAXXXXXXXXXXXXVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPPKTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPLKRDATESPMPGSSNPPAQXXXXXXXXXXXXXXXXXXXXXXXEKKSD-DDLFGSPD-NKAFKPTPD 639
            AAYRWYL+NNPQAVGVSYRNF+GG   YAST  Y        P G G C          +T  XXXXXXXXXXX VSY PA+ASTPTP+PN+   G  VP PRE+EST PKT+A+EPMN GNPG  VEDSGF +RRYDR     TPMP +EA DLF+ P+K +    P+P  +NP                          EKK D +DLFG  +   AFK TPD
Sbjct:   15 AAYRWYLLNNPQAVGVSYRNFSGG-TAYASTGSY------YGPVGRGSCGMXXXXXXXXATXXXXXXXXXXXXXGVSYNPATASTPTPDPNS---GNPVPPPREVESTTPKTFADEPMNSGNPGPGVEDSGFEQRRYDRSPMNSTPMPKDEANDLFQPPVKPEGETQPVP-RANP---------IVPENTRPERSQPDFGPEKKEDSNDLFGGGNPTDAFKVTPD 219          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104868.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6I6AGV3_9PLAN7.310e-10792.02Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518AB14_9PLAN7.790e-7580.93Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A517WRK7_9PLAN3.400e-5656.74Uncharacterized protein n=4 Tax=Gimesia aquarii Ta... [more]
A0A518IHC0_9PLAN7.750e-5259.46Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A6BZH8_9PLAN4.030e-4957.73Uncharacterized protein n=8 Tax=Planctomycetaceae ... [more]
A0A2E2C472_9PLAN1.190e-4354.30Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A3C0ABF4_9PLAN5.420e-4252.00Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104868contigM-pyrifera_M_contig104868:2..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size639
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.408209-CDS-M-pyrifera_M_contig104868:1..6401622815556.408209-CDS-M-pyrifera_M_contig104868:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104868 2..640 -
1692277462.245258-CDS-M-pyrifera_M_contig104868:1..6401692277462.245258-CDS-M-pyrifera_M_contig104868:1..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104868 2..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104868.1047.1prot_M-pyrifera_M_contig104868.1047.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104868 2..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104868.1047.1

>prot_M-pyrifera_M_contig104868.1047.1 ID=prot_M-pyrifera_M_contig104868.1047.1|Name=mRNA_M-pyrifera_M_contig104868.1047.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=213bp
AAYRWYLINNPQAVGVSYRNFNGGGNMYASTVGYGPAAGCCSPCGMGGCS
TGACGMGGCSTGNCGVSYPPASASTPTPEPNNTTNGAKVPEPREIESTPP
KTYAEEPMNPGNPGGNVEDSGFGERRYDRKTPMDTPMPGNEAEDLFKEPL
KRDATESPMPGSSNPPAQPNFGTEPSQPNFGTEPSQPGFGPEKKSDDDLF
GSPDNKAFKPTPD
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mRNA from alignment at M-pyrifera_M_contig104868:2..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104868.1047.1 ID=mRNA_M-pyrifera_M_contig104868.1047.1|Name=mRNA_M-pyrifera_M_contig104868.1047.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=639bp|location=Sequence derived from alignment at M-pyrifera_M_contig104868:2..640- (Macrocystis pyrifera P11B4 male)
GCCGCTTATCGCTGGTACCTGATCAACAACCCGCAGGCTGTTGGCGTCAG CTACCGCAACTTTAATGGTGGCGGCAACATGTATGCGTCCACCGTCGGCT ACGGTCCTGCTGCAGGCTGCTGTTCCCCTTGTGGAATGGGTGGCTGCTCA ACCGGTGCCTGTGGTATGGGTGGATGCAGCACAGGCAACTGTGGCGTCTC CTATCCTCCCGCCAGTGCCAGCACACCGACTCCCGAACCCAACAACACCA CCAACGGTGCCAAGGTTCCGGAACCCCGCGAAATTGAGAGCACTCCTCCC AAAACTTATGCCGAAGAGCCCATGAATCCCGGCAACCCCGGCGGCAACGT GGAAGATTCCGGCTTCGGTGAACGTCGTTACGATCGTAAAACCCCCATGG ATACTCCCATGCCGGGCAATGAAGCAGAAGACCTCTTCAAAGAACCGCTG AAACGGGACGCCACTGAGTCTCCCATGCCGGGCAGCAGCAATCCTCCCGC ACAGCCAAACTTCGGGACAGAACCTTCGCAGCCCAACTTCGGAACCGAGC CTTCTCAACCCGGTTTTGGCCCTGAGAAAAAATCGGACGACGATCTGTTC GGTTCTCCGGACAACAAGGCCTTCAAGCCGACTCCGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104868:2..640-

>mRNA_M-pyrifera_M_contig104868.1047.1 ID=mRNA_M-pyrifera_M_contig104868.1047.1|Name=mRNA_M-pyrifera_M_contig104868.1047.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1278bp|location=Sequence derived from alignment at M-pyrifera_M_contig104868:2..640- (Macrocystis pyrifera P11B4 male)
GCCGCTTATCGCTGGTACCTGATCAACAACCCGCAGGCTGTTGGCGTCAG
CTACCGCAACTTTAATGGTGGCGGCAACATGTATGCGTCCACCGTCGGCT
ACGGTCCTGCTGCAGGCTGCTGTTCCCCTTGTGGAATGGGTGGCTGCTCA
ACCGGTGCCTGTGGTATGGGTGGATGCAGCACAGGCAACTGTGGCGTCTC
CTATCCTCCCGCCAGTGCCAGCACACCGACTCCCGAACCCAACAACACCA
CCAACGGTGCCAAGGTTCCGGAACCCCGCGAAATTGAGAGCACTCCTCCC
AAAACTTATGCCGAAGAGCCCATGAATCCCGGCAACCCCGGCGGCAACGT
GGAAGATTCCGGCTTCGGTGAACGTCGTTACGATCGTAAAACCCCCATGG
ATACTCCCATGCCGGGCAATGAAGCAGAAGACCTCTTCAAAGAACCGCTG
AAACGGGACGCCACTGAGTCTCCCATGCCGGGCAGCAGCAATCCTCCCGC
ACAGCCAAACTTCGGGACAGAACCTTCGCAGCCCAACTTCGGAACCGAGC
CTTCTCAACCCGGTTTTGGCCCTGAGAAAAAATCGGACGACGATCTGTTC
GGTTCTCCGGACAACAAGGCCTTCAAGCCGACTCCGGATGCCGCTTATCG
CTGGTACCTGATCAACAACCCGCAGGCTGTTGGCGTCAGCTACCGCAACT
TTAATGGTGGCGGCAACATGTATGCGTCCACCGTCGGCTACGGTCCTGCT
GCAGGCTGCTGTTCCCCTTGTGGAATGGGTGGCTGCTCAACCGGTGCCTG
TGGTATGGGTGGATGCAGCACAGGCAACTGTGGCGTCTCCTATCCTCCCG
CCAGTGCCAGCACACCGACTCCCGAACCCAACAACACCACCAACGGTGCC
AAGGTTCCGGAACCCCGCGAAATTGAGAGCACTCCTCCCAAAACTTATGC
CGAAGAGCCCATGAATCCCGGCAACCCCGGCGGCAACGTGGAAGATTCCG
GCTTCGGTGAACGTCGTTACGATCGTAAAACCCCCATGGATACTCCCATG
CCGGGCAATGAAGCAGAAGACCTCTTCAAAGAACCGCTGAAACGGGACGC
CACTGAGTCTCCCATGCCGGGCAGCAGCAATCCTCCCGCACAGCCAAACT
TCGGGACAGAACCTTCGCAGCCCAACTTCGGAACCGAGCCTTCTCAACCC
GGTTTTGGCCCTGAGAAAAAATCGGACGACGATCTGTTCGGTTCTCCGGA
CAACAAGGCCTTCAAGCCGACTCCGGAT
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