mRNA_M-pyrifera_M_contig104863.1046.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104863.1046.1
Unique NamemRNA_M-pyrifera_M_contig104863.1046.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A1B1YQB2_9GAMM (Uncharacterized protein n=4 Tax=Bacteria TaxID=2 RepID=A0A1B1YQB2_9GAMM)

HSP 1 Score: 326 bits (836), Expect = 1.000e-106
Identity = 153/211 (72.51%), Postives = 177/211 (83.89%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAI-PHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +GI+TG  Y  +LRD R+LY+ G+RV+DVT YAP  GI+  I  HFD FH PELQ   T+ SP +G+PVSNSFL  RTW+E+ QR+ GESLRK+AT+G+MGRLPDFMNAFVTD A I PHVLGHRDKAFA+NA+RYWEYCRD+DICLTHTLVDPKRDY K L +QRALK VRETD+GIVV GARMLSTLAPVS E+WVGPFMPR+P EEDY
Sbjct:    1 MGIRTGAQYIASLRDDRALYIAGQRVRDVTAYAPLAGILGSIGEHFDAFHKPELQADYTYASPTDGQPVSNSFLPARTWDEVQQRLRGESLRKEATFGLMGRLPDFMNAFVTDAAVIAPHVLGHRDKAFADNAIRYWEYCRDQDICLTHTLVDPKRDYGKDLSAQRALKVVRETDAGIVVSGARMLSTLAPVSNEIWVGPFMPRRPGEEDY 211          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A661ENS0_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661ENS0_9GAMM)

HSP 1 Score: 293 bits (749), Expect = 2.750e-94
Identity = 137/209 (65.55%), Postives = 168/209 (80.38%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAI-PHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEE 624
            +G+KTG  Y   L DGR+LY+ GERV++  +YAP +GII  IS H+D FH PELQ R T+ SP +G PVSNSFL   TWE+M QR+ GE+LRK+ATYGMMGR+PDFMNAFVTD+A I PHVLGH+DK FA+NA+ Y++YCRD+DIC+THTL DP++DYSK L  Q +++ VRE D GI V GARMLSTLAPVS EL+VGPFMPR+P EE
Sbjct:    1 MGLKTGAQYRELLNDGRALYIGGERVKNPNQYAPLQGIIKTISEHYDDFHKPELQARYTYASPADGAPVSNSFLEAVTWEQMEQRIIGETLRKEATYGMMGRMPDFMNAFVTDLAVIAPHVLGHKDKTFADNAINYYQYCRDQDICVTHTLADPRKDYSKPLGEQNSVRIVREADDGIYVTGARMLSTLAPVSHELFVGPFMPRQPGEE 209          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A661ETC6_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661ETC6_9GAMM)

HSP 1 Score: 285 bits (729), Expect = 2.810e-91
Identity = 135/209 (64.59%), Postives = 166/209 (79.43%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAI-PHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEE 624
            +G+KTG  Y   L DGRSLY+ GE V++   YAP +GII  +S H+D F+ PELQ   T+ SP +G+PVSNSFL   +W E+ QR+ GE+LRK+ATYGMMGR+PDFMNAFVTD+  I PHVLGH+DKAFAENA++Y+E+CRDEDICLTHTL DP++DYSK L  Q +++ VRE D GI V GARMLSTLAPVS EL+VGPFMPR+P EE
Sbjct:    1 MGLKTGAEYRELLNDGRSLYIGGELVRNPNDYAPLQGIIQTVSEHYDEFYKPELQASYTYASPADGKPVSNSFLEAVSWPEIEQRMTGETLRKEATYGMMGRMPDFMNAFVTDMRLIAPHVLGHQDKAFAENAIKYYEFCRDEDICLTHTLADPRKDYSKPLGEQNSVRMVREADDGIYVTGARMLSTLAPVSHELFVGPFMPRQPGEE 209          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A7Y4X4F2_9DELT (4-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X4F2_9DELT)

HSP 1 Score: 276 bits (706), Expect = 9.970e-88
Identity = 129/210 (61.43%), Postives = 166/210 (79.05%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +G +TG+AY   LRD R +YVNGE V+DVT+Y P++G+I  ++  +DR  DP   P MT PSP +G+PVS SF+L +T EEM+QRV+GE  R + TYG+MGRLPDFMNAFV D AAI  +LG ++  F ENA  Y+E CR++D+CLTHTLVDP+ D SKG+E+Q AL+ V+ETD+G++V GARMLSTLAPVS+ELWVGP+MPRKP EEDY
Sbjct:    1 MGARTGKAYIEGLRDDRRIYVNGELVRDVTQYRPFQGVIRTLADLYDRQSDPTYAPFMTTPSPTSGQPVSTSFVLAKTQEEMVQRVNGERARCELTYGLMGRLPDFMNAFVADTAAIRDLLGRQNPRFGENAWTYYEQCREQDLCLTHTLVDPQIDRSKGVEAQEALRVVKETDAGLLVRGARMLSTLAPVSDELWVGPYMPRKPGEEDY 210          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A1Y0BFL9_9BACT (E123 n=2 Tax=environmental samples TaxID=48479 RepID=A0A1Y0BFL9_9BACT)

HSP 1 Score: 270 bits (691), Expect = 1.560e-85
Identity = 125/210 (59.52%), Postives = 166/210 (79.05%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +G +TG+ Y+  LRD R +YV GE V+DVT+Y P++G+I  ++  +DR  +P+ +  +T PSP +  PVS SF+L +TWEEM QRV GE LR + TYG+MGRLPDFMNAFVTD+AAI  +LG +   F ENA RY+E CR++D+CLTHTLVDP+ D S+G+E+Q AL+ V+ETD+G++V GARMLSTLAPVS+ELWVGP+MPRKP +EDY
Sbjct:    1 MGTRTGREYSEGLRDNRHIYVKGELVRDVTQYPPFQGVIRTLADLYDRQQEPQSRGALTTPSPTSDNPVSTSFVLAKTWEEMEQRVSGERLRCEFTYGLMGRLPDFMNAFVTDMAAIRPLLGRQRPEFGENAWRYYELCREKDLCLTHTLVDPQVDRSQGVEAQDALRIVKETDAGLLVRGARMLSTLAPVSDELWVGPYMPRKPGQEDY 210          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A3D3UEL1_9PROT (4-hydroxyphenylacetate 3-hydroxylase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3D3UEL1_9PROT)

HSP 1 Score: 264 bits (674), Expect = 5.110e-83
Identity = 121/210 (57.62%), Postives = 158/210 (75.24%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +G +TGQ Y   LRDGR +YVNG+ V+DVT Y  Y+G++ E++ H+DR HD     ++T  SP +G PVSNSFL  R  + + QR+ GE LR + TYG+MGRLPDF+NA+VTD+AA+PHVLG +DK FAENA  Y+ YCRD D+C+THTL+DP  D  KG ++Q+ L  VRE+D+GI+V GARMLSTLAP+S+EL VGPF+PR   EE Y
Sbjct:    1 MGARTGQQYIEGLRDGRRIYVNGDLVRDVTDYHGYRGVVRELARHYDRHHDAAFAEKLTFASPRDGAPVSNSFLFARDRDSLEQRIVGERLRCEQTYGLMGRLPDFLNAWVTDMAAVPHVLGAKDKKFAENAANYYAYCRDNDVCMTHTLLDPHVDRGKGPDAQQGLHIVRESDAGIIVSGARMLSTLAPISDELLVGPFLPRAAGEEAY 210          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A661EI18_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661EI18_9GAMM)

HSP 1 Score: 264 bits (675), Expect = 5.790e-83
Identity = 123/210 (58.57%), Postives = 157/210 (74.76%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +GI+TG  Y  +L+D R +++NG  V DVT +  + GI+ E++ H+DRFH+PE Q   T  SP +G PVSNS+L  +T  EM QRV GE+ RK  TYGMMGR+PD+MNAFVTD+AAI HVLGH++  FA+NA RY+EY RD DIC THTLVDPK+DY+  L   R+++ V +  +GIVV GARMLSTLAPVS E++VG FMPR P EEDY
Sbjct:   13 MGIRTGAEYIASLKDNRRIFINGGEVNDVTDHPAFSGIVQEVARHYDRFHEPEKQAIYTFSSPADGAPVSNSYLFAQTAGEMAQRVRGETERKADTYGMMGRMPDYMNAFVTDLAAIGHVLGHQEPRFADNAQRYYEYARDSDICFTHTLVDPKKDYTASLGEHRSVRIVEQNSAGIVVSGARMLSTLAPVSNEIFVGAFMPRMPGEEDY 222          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A3D5DGP7_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DGP7_9GAMM)

HSP 1 Score: 241 bits (614), Expect = 5.540e-74
Identity = 109/210 (51.90%), Postives = 154/210 (73.33%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +GI+TG+ Y + LRD R ++VNG  + DVT Y  ++  + E++  +D  HDP  +  +T+ SP +G+PVS SF++ +T +E+  RV GESLR D TYG+MGRLPD+MNAF TD AAI ++LGHR  +F ENA+ YW++ RD D+ LTH LVDP  D SKG+E+ +A+  V ET +G+VV+G +MLSTLAP+S+E++V P+MPRK  EE Y
Sbjct:    1 MGIRTGREYISGLRDERQIFVNGNLISDVTDYPAFRRGVEELARVYDHQHDPAYKTILTYASPSDGKPVSTSFMMAKTMDELNLRVRGESLRADLTYGLMGRLPDYMNAFATDCAAIAYLLGHRQASFGENAINYWQHVRDNDLALTHVLVDPHIDKSKGVEASKAMHVVEETSAGLVVEGCKMLSTLAPLSDEVYVAPYMPRKTGEEKY 210          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A7Y4X322_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4X322_9DELT)

HSP 1 Score: 233 bits (593), Expect = 3.710e-71
Identity = 112/214 (52.34%), Postives = 150/214 (70.09%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQR----ALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +GI+TG  +  +LRD R +YVNGER+ DVT Y P++GI++ +++ +D  H  E +  +T PSP +G PV+ SFL   +  ++ QR+  E +R + T+G+MGRLPDF NA+VTD+A     LG RD  F  NA+RYWE CRD D+CLTHTL DP+ D SKG   Q      L+ VRETDSG++V GA+MLSTLAP + EL++GPFMPR P EEDY
Sbjct:    1 MGIRTGSEFIESLRDERVVYVNGERLTDVTTYPPFQGILATLASLYDLNH--ERRAELTFPSPADGAPVALSFLKAASLAQVEQRLRAEEIRAEYTFGLMGRLPDFCNAYVTDLAVAAEYLGQRDPRFGHNAIRYWEQCRDSDLCLTHTLADPQIDRSKGPAEQSDPFLTLRVVRETDSGVIVRGAKMLSTLAPFANELYLGPFMPRSPGEEDY 212          
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Match: A0A1Y0BPF8_9BACT (L690 n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1Y0BPF8_9BACT)

HSP 1 Score: 225 bits (573), Expect = 3.600e-68
Identity = 111/214 (51.87%), Postives = 147/214 (68.69%), Query Frame = 1
Query:    1 VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFHDPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMMGRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTLVDPKRDYSKGLESQR----ALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPFMPRKPDEEDY 630
            +GI+TG A+  +LRD R +YVNGER+ DVT Y P++G+++ ++A +D  H  E +  +T  SP +G PV+ SFL      E+ QR+  E +R + T+G+MGRLPDF N +VTD+AA    LG R+  F +NALRYW  CRD D+CLTHTL DP+ D SKG   Q      L+  RETD G+VV GA+MLSTLAP + EL++GPFMPR P EEDY
Sbjct:    1 MGIRTGSAFIESLRDERVVYVNGERLTDVTTYPPFQGVLATLAALYDLNH--ERRAELTFASPADGAPVALSFLKATALAEVEQRLRAEEIRAEFTFGLMGRLPDFCNGYVTDLAAAADYLGQREPRFGQNALRYWADCRDRDLCLTHTLADPQIDRSKGPAEQSDPFLTLRVERETDRGVVVRGAKMLSTLAPFANELFLGPFMPRAPGEEDY 212          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104863.1046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1B1YQB2_9GAMM1.000e-10672.51Uncharacterized protein n=4 Tax=Bacteria TaxID=2 R... [more]
A0A661ENS0_9GAMM2.750e-9465.55Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A661ETC6_9GAMM2.810e-9164.59Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A7Y4X4F2_9DELT9.970e-8861.434-hydroxyphenylacetate 3-hydroxylase n=1 Tax=Delta... [more]
A0A1Y0BFL9_9BACT1.560e-8559.52E123 n=2 Tax=environmental samples TaxID=48479 Rep... [more]
A0A3D3UEL1_9PROT5.110e-8357.624-hydroxyphenylacetate 3-hydroxylase n=6 Tax=Alpha... [more]
A0A661EI18_9GAMM5.790e-8358.57Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A3D5DGP7_9GAMM5.540e-7451.90Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7Y4X322_9DELT3.710e-7152.34Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1Y0BPF8_9BACT3.600e-6851.87L690 n=1 Tax=uncultured bacterium TaxID=77133 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104863contigM-pyrifera_M_contig104863:2..631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score174.5
Seed ortholog evalue5.3e-41
Seed eggNOG ortholog566461.SSFG_01849
Preferred namehpaB
KEGG rclassRC00046
KEGG koko:K00483,ko:K16901
KEGG ReactionR02698,R03299,R09517
KEGG Pathwayko00350,ko00380,ko01120,ko01220,map00350,map00380,map01120,map01220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM 4-hydroxyphenylacetate 3-hydroxylase
EggNOG OGs2GKIQ@201174,COG2368@1,COG2368@2
EC1.14.14.8,1.14.14.9
COG Functional cat.Q
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.3692877-CDS-M-pyrifera_M_contig104863:1..6311622815556.3692877-CDS-M-pyrifera_M_contig104863:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104863 2..631 -
1692277462.2350821-CDS-M-pyrifera_M_contig104863:1..6311692277462.2350821-CDS-M-pyrifera_M_contig104863:1..631Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104863 2..631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104863.1046.1prot_M-pyrifera_M_contig104863.1046.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104863 2..631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104863.1046.1

>prot_M-pyrifera_M_contig104863.1046.1 ID=prot_M-pyrifera_M_contig104863.1046.1|Name=mRNA_M-pyrifera_M_contig104863.1046.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
VGIKTGQAYTNNLRDGRSLYVNGERVQDVTRYAPYKGIISEISAHFDRFH
DPELQPRMTHPSPVNGEPVSNSFLLTRTWEEMLQRVDGESLRKDATYGMM
GRLPDFMNAFVTDVAAIPHVLGHRDKAFAENALRYWEYCRDEDICLTHTL
VDPKRDYSKGLESQRALKFVRETDSGIVVDGARMLSTLAPVSEELWVGPF
MPRKPDEEDY
back to top

mRNA from alignment at M-pyrifera_M_contig104863:2..631-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104863.1046.1 ID=mRNA_M-pyrifera_M_contig104863.1046.1|Name=mRNA_M-pyrifera_M_contig104863.1046.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig104863:2..631- (Macrocystis pyrifera P11B4 male)
GTGGGCATTAAAACGGGACAGGCTTACACAAACAATCTGCGCGATGGCCG CTCTTTGTACGTCAACGGCGAGCGCGTGCAAGACGTCACCCGGTATGCGC CGTATAAAGGCATCATCAGCGAAATTTCTGCGCACTTCGACCGTTTCCAT GACCCTGAGCTACAGCCGCGCATGACGCATCCGTCGCCGGTCAACGGGGA GCCCGTAAGCAATTCGTTTTTGCTAACGCGGACCTGGGAGGAGATGTTGC AGCGTGTCGACGGCGAATCGCTACGCAAAGATGCGACTTACGGGATGATG GGGAGATTGCCGGATTTCATGAACGCCTTCGTCACCGATGTTGCCGCCAT ACCGCACGTGCTCGGCCATCGTGACAAGGCGTTCGCGGAAAATGCGCTGC GCTATTGGGAGTATTGTCGTGATGAGGATATTTGTCTTACGCATACACTC GTTGATCCAAAGCGCGACTACAGCAAAGGTCTCGAAAGCCAGCGTGCGCT GAAATTTGTCCGCGAAACCGACAGCGGAATCGTGGTTGATGGTGCGCGCA TGTTATCGACTCTGGCACCGGTGAGTGAAGAGTTGTGGGTCGGACCGTTT ATGCCGCGCAAGCCCGACGAAGAAGATTAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104863:2..631-

>mRNA_M-pyrifera_M_contig104863.1046.1 ID=mRNA_M-pyrifera_M_contig104863.1046.1|Name=mRNA_M-pyrifera_M_contig104863.1046.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig104863:2..631- (Macrocystis pyrifera P11B4 male)
GTGGGCATTAAAACGGGACAGGCTTACACAAACAATCTGCGCGATGGCCG
CTCTTTGTACGTCAACGGCGAGCGCGTGCAAGACGTCACCCGGTATGCGC
CGTATAAAGGCATCATCAGCGAAATTTCTGCGCACTTCGACCGTTTCCAT
GACCCTGAGCTACAGCCGCGCATGACGCATCCGTCGCCGGTCAACGGGGA
GCCCGTAAGCAATTCGTTTTTGCTAACGCGGACCTGGGAGGAGATGTTGC
AGCGTGTCGACGGCGAATCGCTACGCAAAGATGCGACTTACGGGATGATG
GGGAGATTGCCGGATTTCATGAACGCCTTCGTCACCGATGTTGCCGCCAT
ACCGCACGTGCTCGGCCATCGTGACAAGGCGTTCGCGGAAAATGCGCTGC
GCTATTGGGAGTATTGTCGTGATGAGGATATTTGTCTTACGCATACACTC
GTTGATCCAAAGCGCGACTACAGCAAAGGTCTCGAAAGCCAGCGTGCGCT
GAAATTTGTCCGCGAAACCGACAGCGGAATCGTGGTTGATGGTGCGCGCA
TGTTATCGACTCTGGCACCGGTGAGTGAAGAGTTGTGGGTCGGACCGTTT
ATGCCGCGCAAGCCCGACGAAGAAGATTACGTGGGCATTAAAACGGGACA
GGCTTACACAAACAATCTGCGCGATGGCCGCTCTTTGTACGTCAACGGCG
AGCGCGTGCAAGACGTCACCCGGTATGCGCCGTATAAAGGCATCATCAGC
GAAATTTCTGCGCACTTCGACCGTTTCCATGACCCTGAGCTACAGCCGCG
CATGACGCATCCGTCGCCGGTCAACGGGGAGCCCGTAAGCAATTCGTTTT
TGCTAACGCGGACCTGGGAGGAGATGTTGCAGCGTGTCGACGGCGAATCG
CTACGCAAAGATGCGACTTACGGGATGATGGGGAGATTGCCGGATTTCAT
GAACGCCTTCGTCACCGATGTTGCCGCCATACCGCACGTGCTCGGCCATC
GTGACAAGGCGTTCGCGGAAAATGCGCTGCGCTATTGGGAGTATTGTCGT
GATGAGGATATTTGTCTTACGCATACACTCGTTGATCCAAAGCGCGACTA
CAGCAAAGGTCTCGAAAGCCAGCGTGCGCTGAAATTTGTCCGCGAAACCG
ACAGCGGAATCGTGGTTGATGGTGCGCGCATGTTATCGACTCTGGCACCG
GTGAGTGAAGAGTTGTGGGTCGGACCGTTTATGCCGCGCAAGCCCGACGA
AGAAGATTAC
back to top