mRNA_M-pyrifera_M_contig104857.1044.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104857.1044.1
Unique NamemRNA_M-pyrifera_M_contig104857.1044.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104857.1044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104857contigM-pyrifera_M_contig104857:405..635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.2862184-CDS-M-pyrifera_M_contig104857:404..6351622815556.2862184-CDS-M-pyrifera_M_contig104857:404..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104857 405..635 -
1692277462.2056847-CDS-M-pyrifera_M_contig104857:404..6351692277462.2056847-CDS-M-pyrifera_M_contig104857:404..635Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104857 405..635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104857.1044.1prot_M-pyrifera_M_contig104857.1044.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104857 405..635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104857.1044.1

>prot_M-pyrifera_M_contig104857.1044.1 ID=prot_M-pyrifera_M_contig104857.1044.1|Name=mRNA_M-pyrifera_M_contig104857.1044.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
SSLNIENISVNGLVGEHTGDVAISILCSDKTPCKNIEIANVHLTAAPGKK
NEFQCQNACGTASNTSPPSCLSKCEQ*
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mRNA from alignment at M-pyrifera_M_contig104857:405..635-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104857.1044.1 ID=mRNA_M-pyrifera_M_contig104857.1044.1|Name=mRNA_M-pyrifera_M_contig104857.1044.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig104857:405..635- (Macrocystis pyrifera P11B4 male)
TCCTCTCTCAACATCGAAAACATTTCTGTGAATGGCTTAGTAGGGGAACA
TACTGGCGACGTTGCCATTAGCATCCTTTGTTCTGACAAAACTCCATGCA
AGAACATTGAGATCGCAAATGTTCACCTCACGGCGGCACCTGGGAAGAAG
AATGAATTTCAGTGCCAGAATGCATGTGGTACTGCCTCCAACACCTCACC
TCCATCCTGCCTCTCCAAATGCGAACAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104857:405..635-

>mRNA_M-pyrifera_M_contig104857.1044.1 ID=mRNA_M-pyrifera_M_contig104857.1044.1|Name=mRNA_M-pyrifera_M_contig104857.1044.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig104857:405..635- (Macrocystis pyrifera P11B4 male)
TCCTCTCTCAACATCGAAAACATTTCTGTGAATGGCTTAGTAGGGGAACA
TACTGGCGACGTTGCCATTAGCATCCTTTGTTCTGACAAAACTCCATGCA
AGAACATTGAGATCGCAAATGTTCACCTCACGGCGGCACCTGGGAAGAAG
AATGAATTTCAGTGCCAGAATGCATGTGGTACTGCCTCCAACACCTCACC
TCCATCCTGCCTCTCCAAATGCGAACAATGATCCTCTCTCAACATCGAAA
ACATTTCTGTGAATGGCTTAGTAGGGGAACATACTGGCGACGTTGCCATT
AGCATCCTTTGTTCTGACAAAACTCCATGCAAGAACATTGAGATCGCAAA
TGTTCACCTCACGGCGGCACCTGGGAAGAAGAATGAATTTCAGTGCCAGA
ATGCATGTGGTACTGCCTCCAACACCTCACCTCCATCCTGCCTCTCCAAA
TGCGAACAATGA
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