mRNA_M-pyrifera_M_contig104856.1043.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104856.1043.1
Unique NamemRNA_M-pyrifera_M_contig104856.1043.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: UPI0019D6848F (transcription factor GTE9-like n=1 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D6848F)

HSP 1 Score: 96.3 bits (238), Expect = 1.330e-20
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   40 NELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLR 354
            +++R C  I RKL++      F QPVDPV     DYF+VI+ PMDLGT+++KLG   Y S D + AD  L FSNA  YN  G+ V+E AK LN I   EW+ + R
Sbjct:   61 SKIRLCGNILRKLMDHKGGWLFNQPVDPVLFKIPDYFDVIRHPMDLGTVKKKLGSKQYVSTDEFAADVRLTFSNAMKYNPPGNDVHEIAKELNGIFDSEWEAVER 165          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A1Y1YR21_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YR21_9FUNG)

HSP 1 Score: 93.2 bits (230), Expect = 5.860e-19
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   40 NELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQM 348
            +E++ C+RI RK++   S  +F QPVDP+RD C  YF++IK PMDLGT++ KL +  Y +   +  D  L+ +N  I+N  G +VY E + L ++  +EW ++
Sbjct:  920 DEMKICKRIIRKMMAHKSAFYFLQPVDPIRDGCPTYFDLIKHPMDLGTVKAKLDEGGYHNLKEFEDDIRLMLNNCFIFNPIGSYVYNEGQELESVFEKEWSEL 1022          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A835F8D2_9POAL (Bromo domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835F8D2_9POAL)

HSP 1 Score: 92.8 bits (229), Expect = 6.790e-19
Identity = 49/104 (47.12%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   43 ELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLR 354
            ++R C  I RKL++  S   F  PVDPV     DYF+VI+ PMDLGT+++KL    Y S D + AD  L FSNA  YN  G+ V+E AK LN I   EW+ + R
Sbjct:   61 KIRLCGNILRKLMDHKSGWLFNTPVDPVLFGIPDYFDVIRHPMDLGTVKKKLTSKQYRSTDEFAADVRLTFSNAMKYNPPGNHVHEIAKELNGIFDSEWESVER 164          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A0A9P3L8_ARUDO (GTE901 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9P3L8_ARUDO)

HSP 1 Score: 90.9 bits (224), Expect = 2.840e-18
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   49 RTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLRERAERD 372
            R C  I RKL++  S   F +PVDPV     DYF+VI+ PMDLGT+++KL    Y S D + AD  L FSNA  YN  G+ V+  AK LN I   EW+ + RE  +R+
Sbjct:   63 RLCGNILRKLMDHKSIWLFDKPVDPVLYGIPDYFDVIRNPMDLGTVKKKLSNKQYVSTDEFAADVRLTFSNAMKYNPPGNDVHAIAKELNGIFDSEWESVERECRDRN 170          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A0Q3J3Q1_BRADI (Bromo domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3J3Q1_BRADI)

HSP 1 Score: 90.9 bits (224), Expect = 3.180e-18
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 1
Query:    7 GTRKKLPAAVKNELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLRERAERDR 375
             ++ K+ +   ++ R C+ +  KL+       F +PVDPV     DYF+VI+ PMDLGT+++KL    Y S D + AD  L FSNA  YN  G+FV+  A++LN I   EW   L ER  RDR
Sbjct:   49 SSKNKVESMNASQARQCKNVLEKLMGHTGGWLFHEPVDPVLFGIPDYFDVIRNPMDLGTVKKKLTNKNYPSTDEFAADVRLTFSNAMKYNPPGNFVHTVAEQLNGIFDSEWK--LYERKWRDR 169          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A261Y1L4_9FUNG (Transcription initiation factor TFIID subunit 2 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y1L4_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 5.130e-18
Identity = 49/113 (43.36%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   37 KNELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEW----DQMLRERA 363
            K  ++ C+ I RKL     +  F QPVDP+     DYF+VIK PMDLG+I++KL  + Y SA+ ++ D  LVF+N   YN EG +V++E K L  I   EW    DQ  +E+A
Sbjct: 1309 KEAVKGCRAIIRKLFASKHSLNFQQPVDPIALNIPDYFDVIKNPMDLGSIKQKLDDNRYGSANEFYNDVKLVFNNCYTYNPEGSYVHQEGKTLEAIFESEWQKFQDQQKQEQA 1421          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A8J5T5R5_ZIZPA (Bromo domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5T5R5_ZIZPA)

HSP 1 Score: 89.0 bits (219), Expect = 6.470e-18
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   40 NELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLRERAERDR 375
            ++LR C  + +KL++ +    F +PVDPV     DYF+VI+ PMDLGT+++KL    Y S D + AD  L FSNA  YN  G+ V+  A +LN +   EW   L ER  RDR
Sbjct:   60 SKLRQCGNVLKKLMDHEGGWLFHKPVDPVLYGIPDYFDVIRNPMDLGTVKKKLTNKQYSSTDEFAADVRLTFSNAMKYNPPGNDVHNIADQLNRLFDSEWK--LLERKWRDR 169          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A5J9UTQ3_9POAL (Bromo domain-containing protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UTQ3_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 7.520e-18
Identity = 52/122 (42.62%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   13 RKKLPAAVKNELRTCQRITRKLLNL-DSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLRERAERDR 375
            +KK  +    ++R C  I  KL++  D +  F  PVDPV     DYF+VI+ PMDLGT+++KL    Y S + + AD  L FSNA  YN  G++V+  AK LN I   EW+ +  ER  RDR
Sbjct:   51 KKKTESMDTRKIRLCGNILSKLMDQGDKSLLFLHPVDPVVYGIPDYFDVIRNPMDLGTVKKKLANRQYASTNEFAADVRLTFSNAMTYNPPGNYVHNVAKELNGIFESEWESV--ERKCRDR 170          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: A0A811QCM8_9POAL (Hypothetical protein n=4 Tax=Andropogoneae TaxID=147429 RepID=A0A811QCM8_9POAL)

HSP 1 Score: 89.7 bits (221), Expect = 8.100e-18
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   28 AAVKNE--LRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLR 354
            A++KN   +R C  I RKL++      F  PVDPV     DYF+VI+ PMDLGT++ KL K  Y S + + AD  L FSNA  YN  G+ V+  AK LN I   EW+ + R
Sbjct:   55 ASMKNSRMIRLCGNIVRKLIDHKGGWLFKDPVDPVLYGIPDYFDVIRNPMDLGTVKNKLTKKKYVSIEEFAADVRLTFSNATKYNPPGNDVHTFAKELNEIFNSEWESVER 165          
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Match: K3ZHV5_SETIT (Bromo domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K3ZHV5_SETIT)

HSP 1 Score: 89.4 bits (220), Expect = 1.110e-17
Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   40 NELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYFEVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYEEAKRLNTILTQEWDQMLR 354
            ++ R C  I RKL+   S   F +PVDPV     DYF+VI+ PMDLGT+++KL    Y S D + AD  L FSNA  YN  G+ V+  AK LN I   EW+ + R
Sbjct:   60 SKTRLCGNILRKLMEHKSGWLFNKPVDPVLYGIPDYFDVIRHPMDLGTVKKKLTNKQYVSTDEFAADVRLTFSNAMKYNPPGNDVHSIAKELNGIFDSEWESVER 164          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104856.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019D6848F1.330e-2047.62transcription factor GTE9-like n=1 Tax=Panicum vir... [more]
A0A1Y1YR21_9FUNG5.860e-1939.81Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A835F8D2_9POAL6.790e-1947.12Bromo domain-containing protein n=2 Tax=Digitaria ... [more]
A0A0A9P3L8_ARUDO2.840e-1846.30GTE901 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0... [more]
A0A0Q3J3Q1_BRADI3.180e-1841.46Bromo domain-containing protein n=1 Tax=Brachypodi... [more]
A0A261Y1L4_9FUNG5.130e-1843.36Transcription initiation factor TFIID subunit 2 n=... [more]
A0A8J5T5R5_ZIZPA6.470e-1843.75Bromo domain-containing protein n=1 Tax=Zizania pa... [more]
A0A5J9UTQ3_9POAL7.520e-1842.62Bromo domain-containing protein n=1 Tax=Eragrostis... [more]
A0A811QCM8_9POAL8.100e-1845.05Hypothetical protein n=4 Tax=Andropogoneae TaxID=1... [more]
K3ZHV5_SETIT1.110e-1745.71Bromo domain-containing protein n=2 Tax=Setaria Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104856contigM-pyrifera_M_contig104856:146..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score96.3
Seed ortholog evalue1.4e-17
Seed eggNOG ortholog38727.Pavir.J16304.1.p
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Bromodomain
EggNOG OGs37JNZ@33090,3G752@35493,3ID65@38820,3KUG7@4447,COG5076@1,KOG1474@2759
COG Functional cat.K
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size495
Cds size495
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.2496488-CDS-M-pyrifera_M_contig104856:145..6401622815556.2496488-CDS-M-pyrifera_M_contig104856:145..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104856 146..640 -
1692277462.1942909-CDS-M-pyrifera_M_contig104856:145..6401692277462.1942909-CDS-M-pyrifera_M_contig104856:145..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104856 146..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104856.1043.1prot_M-pyrifera_M_contig104856.1043.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104856 146..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104856.1043.1

>prot_M-pyrifera_M_contig104856.1043.1 ID=prot_M-pyrifera_M_contig104856.1043.1|Name=mRNA_M-pyrifera_M_contig104856.1043.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
MEGTRKKLPAAVKNELRTCQRITRKLLNLDSNRFFAQPVDPVRDMCADYF
EVIKQPMDLGTIERKLGKDVYDSADSWHADALLVFSNACIYNREGHFVYE
EAKRLNTILTQEWDQMLRERAERDRREAERRMETEESSRMTEDDRARRGE
SGRRRDEAGKRSREE
back to top

mRNA from alignment at M-pyrifera_M_contig104856:146..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104856.1043.1 ID=mRNA_M-pyrifera_M_contig104856.1043.1|Name=mRNA_M-pyrifera_M_contig104856.1043.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=495bp|location=Sequence derived from alignment at M-pyrifera_M_contig104856:146..640- (Macrocystis pyrifera P11B4 male)
ATGGAAGGAACGAGAAAGAAACTCCCAGCTGCTGTGAAGAATGAGCTACG AACATGCCAACGCATCACACGGAAGCTGTTGAACCTTGATTCGAACCGAT TCTTTGCGCAACCGGTCGATCCTGTGCGAGATATGTGTGCAGATTATTTT GAAGTGATTAAGCAACCAATGGATTTAGGCACGATTGAGCGAAAACTCGG CAAAGACGTGTATGACAGTGCTGATTCATGGCATGCGGATGCATTGCTTG TGTTTTCAAACGCTTGTATATACAACAGAGAAGGTCATTTTGTGTATGAA GAAGCAAAGAGGCTCAATACAATCTTGACACAAGAATGGGATCAAATGCT GCGTGAGCGTGCGGAACGTGATCGTCGAGAGGCAGAACGACGGATGGAAA CCGAGGAATCTAGTCGTATGACGGAGGATGATCGTGCACGTCGTGGAGAA AGTGGGAGACGTCGTGATGAAGCAGGGAAGCGATCCCGTGAAGAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104856:146..640-

>mRNA_M-pyrifera_M_contig104856.1043.1 ID=mRNA_M-pyrifera_M_contig104856.1043.1|Name=mRNA_M-pyrifera_M_contig104856.1043.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig104856:146..640- (Macrocystis pyrifera P11B4 male)
ATGGAAGGAACGAGAAAGAAACTCCCAGCTGCTGTGAAGAATGAGCTACG
AACATGCCAACGCATCACACGGAAGCTGTTGAACCTTGATTCGAACCGAT
TCTTTGCGCAACCGGTCGATCCTGTGCGAGATATGTGTGCAGATTATTTT
GAAGTGATTAAGCAACCAATGGATTTAGGCACGATTGAGCGAAAACTCGG
CAAAGACGTGTATGACAGTGCTGATTCATGGCATGCGGATGCATTGCTTG
TGTTTTCAAACGCTTGTATATACAACAGAGAAGGTCATTTTGTGTATGAA
GAAGCAAAGAGGCTCAATACAATCTTGACACAAGAATGGGATCAAATGCT
GCGTGAGCGTGCGGAACGTGATCGTCGAGAGGCAGAACGACGGATGGAAA
CCGAGGAATCTAGTCGTATGACGGAGGATGATCGTGCACGTCGTGGAGAA
AGTGGGAGACGTCGTGATGAAGCAGGGAAGCGATCCCGTGAAGAAATGGA
AGGAACGAGAAAGAAACTCCCAGCTGCTGTGAAGAATGAGCTACGAACAT
GCCAACGCATCACACGGAAGCTGTTGAACCTTGATTCGAACCGATTCTTT
GCGCAACCGGTCGATCCTGTGCGAGATATGTGTGCAGATTATTTTGAAGT
GATTAAGCAACCAATGGATTTAGGCACGATTGAGCGAAAACTCGGCAAAG
ACGTGTATGACAGTGCTGATTCATGGCATGCGGATGCATTGCTTGTGTTT
TCAAACGCTTGTATATACAACAGAGAAGGTCATTTTGTGTATGAAGAAGC
AAAGAGGCTCAATACAATCTTGACACAAGAATGGGATCAAATGCTGCGTG
AGCGTGCGGAACGTGATCGTCGAGAGGCAGAACGACGGATGGAAACCGAG
GAATCTAGTCGTATGACGGAGGATGATCGTGCACGTCGTGGAGAAAGTGG
GAGACGTCGTGATGAAGCAGGGAAGCGATCCCGTGAAGAA
back to top