mRNA_M-pyrifera_M_contig10485.1040.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10485.1040.1
Unique NamemRNA_M-pyrifera_M_contig10485.1040.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10485.1040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10485contigM-pyrifera_M_contig10485:2110..2492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size383
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.171442-CDS-M-pyrifera_M_contig10485:2109..24721622815556.171442-CDS-M-pyrifera_M_contig10485:2109..2472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10485 2110..2472 +
1692277462.1593301-CDS-M-pyrifera_M_contig10485:2109..24721692277462.1593301-CDS-M-pyrifera_M_contig10485:2109..2472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10485 2110..2472 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.1841142-UTR-M-pyrifera_M_contig10485:2472..24921622815556.1841142-UTR-M-pyrifera_M_contig10485:2472..2492Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10485 2473..2492 +
1692277462.1731453-UTR-M-pyrifera_M_contig10485:2472..24921692277462.1731453-UTR-M-pyrifera_M_contig10485:2472..2492Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10485 2473..2492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10485.1040.1prot_M-pyrifera_M_contig10485.1040.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10485 2110..2472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10485.1040.1

>prot_M-pyrifera_M_contig10485.1040.1 ID=prot_M-pyrifera_M_contig10485.1040.1|Name=mRNA_M-pyrifera_M_contig10485.1040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MHQCGIIISHSVDVSNQCFADSQSIILSILSFKTPTTTVRRFSLKRHKTL
AYHSGIGSSGVSTRCSARPWYYRKNKPVLYQVGNICISMRVGHPTAQCSQ
TFERLHPEHGRRQGPQRSMN*
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mRNA from alignment at M-pyrifera_M_contig10485:2110..2492+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10485.1040.1 ID=mRNA_M-pyrifera_M_contig10485.1040.1|Name=mRNA_M-pyrifera_M_contig10485.1040.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=383bp|location=Sequence derived from alignment at M-pyrifera_M_contig10485:2110..2492+ (Macrocystis pyrifera P11B4 male)
ATGCATCAATGTGGAATTATTATTTCTCATTCAGTCGATGTGTCCAACCA
ATGTTTTGCGGACAGCCAGTCCATAATCTTATCTATACTTTCTTTCAAAA
CACCTACAACAACAGTACGCCGATTCTCGTTAAAACGCCATAAGACCCTA
GCCTATCATAGTGGTATTGGTAGTAGTGGAGTCAGTACAAGGTGCAGCGC
AAGACCATGGTACTACAGAAAAAATAAGCCTGTGCTCTACCAGGTGGGGA
ATATATGTATATCAATGCGGGTCGGCCATCCGACCGCTCAGTGCAGTCAG
ACCTTCGAAAGGCTACACCCCGAACATGGTAGACGCCAGGGGCCGCAGCG
TAGTATGAACTAATCGTAATATGTTTGTTTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10485:2110..2492+

>mRNA_M-pyrifera_M_contig10485.1040.1 ID=mRNA_M-pyrifera_M_contig10485.1040.1|Name=mRNA_M-pyrifera_M_contig10485.1040.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig10485:2110..2492+ (Macrocystis pyrifera P11B4 male)
ATGCATCAATGTGGAATTATTATTTCTCATTCAGTCGATGTGTCCAACCA
ATGTTTTGCGGACAGCCAGTCCATAATCTTATCTATACTTTCTTTCAAAA
CACCTACAACAACAGTACGCCGATTCTCGTTAAAACGCCATAAGACCCTA
GCCTATCATAGTGGTATTGGTAGTAGTGGAGTCAGTACAAGGTGCAGCGC
AAGACCATGGTACTACAGAAAAAATAAGCCTGTGCTCTACCAGGTGGGGA
ATATATGTATATCAATGCGGGTCGGCCATCCGACCGCTCAGTGCAGTCAG
ACCTTCGAAAGGCTACACCCCGAACATGGTAGACGCCAGGGGCCGCAGCG
TAGTATGAACTAAATGCATCAATGTGGAATTATTATTTCTCATTCAGTCG
ATGTGTCCAACCAATGTTTTGCGGACAGCCAGTCCATAATCTTATCTATA
CTTTCTTTCAAAACACCTACAACAACAGTACGCCGATTCTCGTTAAAACG
CCATAAGACCCTAGCCTATCATAGTGGTATTGGTAGTAGTGGAGTCAGTA
CAAGGTGCAGCGCAAGACCATGGTACTACAGAAAAAATAAGCCTGTGCTC
TACCAGGTGGGGAATATATGTATATCAATGCGGGTCGGCCATCCGACCGC
TCAGTGCAGTCAGACCTTCGAAAGGCTACACCCCGAACATGGTAGACGCC
AGGGGCCGCAGCGTAGTATGAACTAA
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