mRNA_M-pyrifera_M_contig104845.1039.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104845.1039.1
Unique NamemRNA_M-pyrifera_M_contig104845.1039.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104845.1039.1 vs. uniprot
Match: A0A8A4TPS1_9BACT (Uncharacterized protein n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TPS1_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 9.840e-19
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 1 
Query:    1 LAIDYRASNPVVYVILDSGL------FYTQTLDQISDELFIFVYGTTTTAGIQQSINAGDDLATSPFQYDVEVVLNNAGVSNTNELILGWQ----NAQTR--ITIDIED-TTANLGDTVNLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVFDESAEPVIDSVTVTFAAP---DSDNDGLTDSEEALLGT 576
            LA+DYR +NPVV++I+   L       ++QT++ +++ L+I VYG   ++  QQ+IN G+D+AT+PFQYD   +L  A V   ++L LGW     NA  R  + +D ED     LG+ V+ +                                             TV D       D+V+ +   P   D+D DGLTD++E  LGT
Sbjct:  890 LAVDYRGANPVVHIIVSETLEGPGQLVFSQTMEAVTEPLYILVYGNPVSSDFQQTINPGNDVATAPFQYDPVAILTAAAVDGADQLNLGWNPPDPNANQRPVLNVDQEDGAVVELGNAVSFTATATDAEDGDVSADIQWSVAPGTATGNGSSFNFTPIEVGDYLVTATVSDSEGASATDTVSFSVTDPGDVDTDEDGLTDNQEGQLGT 1097
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BLAST of mRNA_M-pyrifera_M_contig104845.1039.1 vs. uniprot
Match: A0A8J7U7M3_9BACT (SpoVT-AbrB domain-containing protein n=1 Tax=Acanthopleuribacter pedis TaxID=442870 RepID=A0A8J7U7M3_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 1.130e-15
Identity = 65/214 (30.37%), Postives = 101/214 (47.20%), Query Frame = 1 
Query:    1 LAIDYRASNPVVYVILDS-----GLFYTQ-TLDQISDELFIFVYGTTTTAGIQQSINAGDDLATSPFQYDVEVVLNNAGVSNT-----NELILGWQNAQTRITIDIEDTTANL--GDTVNLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVFDESAEPVIDSVTVTFAAP----DSDNDGLTDSEE-ALLGTNPNE 588
            L +DYR ++P+V+VI+       G+ Y +  LDQ++D L+IFVYG   T+G+QQ+IN G+DLA  PF+YD+  ++ +  +        +++ LGW     + T+ +  TT ++  G+ + L+G                                            +V D       DSVTV   A     DSD DGLTDS E A  GT+P++
Sbjct: 3065 LCVDYRGTHPIVHVIMAESSGGPGVHYGRWELDQVTDPLYIFVYGQPLTSGVQQTINPGNDLALMPFEYDIATIMTDLWIGGNVIDDPDDMFLGWNRTNPKPTLTLTPTTLSINEGELIALAGTAVDWENNDLTASISWSETGGNSATGANFAFVASGVGLHTVTA-SVTDRFGMTRTDSVTVYVLAAADTRDSDGDGLTDSAELATHGTDPHD 3277
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104845.1039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8A4TPS1_9BACT9.840e-1930.77Uncharacterized protein n=1 Tax=Sulfidibacter cora... [more]
A0A8J7U7M3_9BACT1.130e-1530.37SpoVT-AbrB domain-containing protein n=1 Tax=Acant... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104845contigM-pyrifera_M_contig104845:11..640 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size630
Cds size630
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815556.0598936-CDS-M-pyrifera_M_contig104845:10..6401622815556.0598936-CDS-M-pyrifera_M_contig104845:10..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104845 11..640 -
1692277462.1042788-CDS-M-pyrifera_M_contig104845:10..6401692277462.1042788-CDS-M-pyrifera_M_contig104845:10..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104845 11..640 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104845.1039.1prot_M-pyrifera_M_contig104845.1039.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104845 11..640 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104845.1039.1

>prot_M-pyrifera_M_contig104845.1039.1 ID=prot_M-pyrifera_M_contig104845.1039.1|Name=mRNA_M-pyrifera_M_contig104845.1039.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
LAIDYRASNPVVYVILDSGLFYTQTLDQISDELFIFVYGTTTTAGIQQSI
NAGDDLATSPFQYDVEVVLNNAGVSNTNELILGWQNAQTRITIDIEDTTA
NLGDTVNLSGTAYSADGTDISSTITWLNSTSGTSSTGANFSVTSAVAAIY
SITATVFDESAEPVIDSVTVTFAAPDSDNDGLTDSEEALLGTNPNEPDSD
SDGLSDGDEV
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mRNA from alignment at M-pyrifera_M_contig104845:11..640-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104845.1039.1 ID=mRNA_M-pyrifera_M_contig104845.1039.1|Name=mRNA_M-pyrifera_M_contig104845.1039.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig104845:11..640- (Macrocystis pyrifera P11B4 male)
CTAGCTATTGATTATCGAGCAAGCAACCCAGTTGTATACGTAATTCTGGA
TAGCGGTCTGTTTTACACCCAAACACTTGATCAAATTTCCGATGAACTTT
TCATTTTTGTTTATGGAACGACGACAACAGCAGGAATCCAACAATCAATT
AACGCGGGAGATGACCTAGCTACATCACCATTCCAGTATGATGTCGAAGT
AGTGCTCAACAATGCTGGAGTGAGTAATACAAATGAACTCATTCTCGGGT
GGCAGAATGCCCAAACAAGAATCACCATTGATATTGAAGATACTACGGCC
AACCTTGGCGATACTGTTAACCTTAGCGGCACCGCTTATAGCGCAGATGG
GACAGATATCAGCTCAACTATCACTTGGCTTAATAGCACTAGCGGAACAT
CAAGCACCGGCGCAAATTTCAGTGTAACTAGTGCAGTAGCTGCTATCTAC
AGCATTACCGCAACTGTATTCGATGAATCCGCTGAGCCCGTTATCGATAG
CGTCACAGTGACCTTTGCAGCACCAGACAGCGACAATGACGGCCTAACAG
ATTCAGAAGAAGCGTTACTAGGCACTAACCCAAACGAACCAGACTCAGAT
TCTGACGGCTTGAGTGATGGCGACGAAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104845:11..640-

>mRNA_M-pyrifera_M_contig104845.1039.1 ID=mRNA_M-pyrifera_M_contig104845.1039.1|Name=mRNA_M-pyrifera_M_contig104845.1039.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig104845:11..640- (Macrocystis pyrifera P11B4 male)
CTAGCTATTGATTATCGAGCAAGCAACCCAGTTGTATACGTAATTCTGGA
TAGCGGTCTGTTTTACACCCAAACACTTGATCAAATTTCCGATGAACTTT
TCATTTTTGTTTATGGAACGACGACAACAGCAGGAATCCAACAATCAATT
AACGCGGGAGATGACCTAGCTACATCACCATTCCAGTATGATGTCGAAGT
AGTGCTCAACAATGCTGGAGTGAGTAATACAAATGAACTCATTCTCGGGT
GGCAGAATGCCCAAACAAGAATCACCATTGATATTGAAGATACTACGGCC
AACCTTGGCGATACTGTTAACCTTAGCGGCACCGCTTATAGCGCAGATGG
GACAGATATCAGCTCAACTATCACTTGGCTTAATAGCACTAGCGGAACAT
CAAGCACCGGCGCAAATTTCAGTGTAACTAGTGCAGTAGCTGCTATCTAC
AGCATTACCGCAACTGTATTCGATGAATCCGCTGAGCCCGTTATCGATAG
CGTCACAGTGACCTTTGCAGCACCAGACAGCGACAATGACGGCCTAACAG
ATTCAGAAGAAGCGTTACTAGGCACTAACCCAAACGAACCAGACTCAGAT
TCTGACGGCTTGAGTGATGGCGACGAAGTCCTAGCTATTGATTATCGAGC
AAGCAACCCAGTTGTATACGTAATTCTGGATAGCGGTCTGTTTTACACCC
AAACACTTGATCAAATTTCCGATGAACTTTTCATTTTTGTTTATGGAACG
ACGACAACAGCAGGAATCCAACAATCAATTAACGCGGGAGATGACCTAGC
TACATCACCATTCCAGTATGATGTCGAAGTAGTGCTCAACAATGCTGGAG
TGAGTAATACAAATGAACTCATTCTCGGGTGGCAGAATGCCCAAACAAGA
ATCACCATTGATATTGAAGATACTACGGCCAACCTTGGCGATACTGTTAA
CCTTAGCGGCACCGCTTATAGCGCAGATGGGACAGATATCAGCTCAACTA
TCACTTGGCTTAATAGCACTAGCGGAACATCAAGCACCGGCGCAAATTTC
AGTGTAACTAGTGCAGTAGCTGCTATCTACAGCATTACCGCAACTGTATT
CGATGAATCCGCTGAGCCCGTTATCGATAGCGTCACAGTGACCTTTGCAG
CACCAGACAGCGACAATGACGGCCTAACAGATTCAGAAGAAGCGTTACTA
GGCACTAACCCAAACGAACCAGACTCAGATTCTGACGGCTTGAGTGATGG
CGACGAAGTC
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