mRNA_M-pyrifera_M_contig104841.1037.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104841.1037.1
Unique NamemRNA_M-pyrifera_M_contig104841.1037.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104841.1037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104841contigM-pyrifera_M_contig104841:13..426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.9845812-CDS-M-pyrifera_M_contig104841:12..4261622815555.9845812-CDS-M-pyrifera_M_contig104841:12..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104841 13..426 -
1692277462.0713677-CDS-M-pyrifera_M_contig104841:12..4261692277462.0713677-CDS-M-pyrifera_M_contig104841:12..426Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104841 13..426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104841.1037.1prot_M-pyrifera_M_contig104841.1037.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104841 13..426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104841.1037.1

>prot_M-pyrifera_M_contig104841.1037.1 ID=prot_M-pyrifera_M_contig104841.1037.1|Name=mRNA_M-pyrifera_M_contig104841.1037.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MPAAVQDPSNPVVDICATNGAFVSLRADGHVFANGDTRFGGDARSIWHAD
GRGWTRITDAVSIHCSYDAAAAILEGGKVVTWGDSSKGGSTNQNGLNLGL
DGANIDRMFSYSRGFVAVTTDGEGVSWGYSTPSVIQDL
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mRNA from alignment at M-pyrifera_M_contig104841:13..426-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104841.1037.1 ID=mRNA_M-pyrifera_M_contig104841.1037.1|Name=mRNA_M-pyrifera_M_contig104841.1037.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig104841:13..426- (Macrocystis pyrifera P11B4 male)
ATGCCAGCAGCTGTCCAAGATCCATCAAACCCTGTTGTTGACATTTGTGC
GACAAATGGTGCGTTTGTTTCATTGCGTGCTGATGGTCATGTCTTCGCCA
ATGGAGATACACGGTTTGGAGGAGACGCACGAAGCATTTGGCACGCAGAT
GGAAGAGGTTGGACAAGGATCACTGATGCTGTGTCGATCCACTGTAGTTA
TGATGCAGCAGCTGCCATTTTGGAAGGAGGAAAAGTAGTGACTTGGGGTG
ACTCATCAAAAGGAGGATCTACAAACCAAAACGGTCTCAATCTTGGTCTT
GATGGTGCAAATATCGATCGAATGTTCAGTTACTCGCGTGGTTTCGTTGC
CGTCACAACAGATGGTGAAGGCGTGTCTTGGGGGTATTCCACTCCAAGTG
TGATCCAGGATCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104841:13..426-

>mRNA_M-pyrifera_M_contig104841.1037.1 ID=mRNA_M-pyrifera_M_contig104841.1037.1|Name=mRNA_M-pyrifera_M_contig104841.1037.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig104841:13..426- (Macrocystis pyrifera P11B4 male)
ATGCCAGCAGCTGTCCAAGATCCATCAAACCCTGTTGTTGACATTTGTGC
GACAAATGGTGCGTTTGTTTCATTGCGTGCTGATGGTCATGTCTTCGCCA
ATGGAGATACACGGTTTGGAGGAGACGCACGAAGCATTTGGCACGCAGAT
GGAAGAGGTTGGACAAGGATCACTGATGCTGTGTCGATCCACTGTAGTTA
TGATGCAGCAGCTGCCATTTTGGAAGGAGGAAAAGTAGTGACTTGGGGTG
ACTCATCAAAAGGAGGATCTACAAACCAAAACGGTCTCAATCTTGGTCTT
GATGGTGCAAATATCGATCGAATGTTCAGTTACTCGCGTGGTTTCGTTGC
CGTCACAACAGATGGTGAAGGCGTGTCTTGGGGGTATTCCACTCCAAGTG
TGATCCAGGATCTTATGCCAGCAGCTGTCCAAGATCCATCAAACCCTGTT
GTTGACATTTGTGCGACAAATGGTGCGTTTGTTTCATTGCGTGCTGATGG
TCATGTCTTCGCCAATGGAGATACACGGTTTGGAGGAGACGCACGAAGCA
TTTGGCACGCAGATGGAAGAGGTTGGACAAGGATCACTGATGCTGTGTCG
ATCCACTGTAGTTATGATGCAGCAGCTGCCATTTTGGAAGGAGGAAAAGT
AGTGACTTGGGGTGACTCATCAAAAGGAGGATCTACAAACCAAAACGGTC
TCAATCTTGGTCTTGATGGTGCAAATATCGATCGAATGTTCAGTTACTCG
CGTGGTTTCGTTGCCGTCACAACAGATGGTGAAGGCGTGTCTTGGGGGTA
TTCCACTCCAAGTGTGATCCAGGATCTT
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