mRNA_M-pyrifera_M_contig104820.1028.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104820.1028.1
Unique NamemRNA_M-pyrifera_M_contig104820.1028.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A3D5DG81_9GAMM (MBL fold metallo-hydrolase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG81_9GAMM)

HSP 1 Score: 234 bits (597), Expect = 1.350e-75
Identity = 103/144 (71.53%), Postives = 124/144 (86.11%), Query Frame = 1
Query:    1 LIPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAI 432
            LIPN RWI Q+REW AANTPE +AAN Y   ++D GH RIE DGE+DVFGDG+VRCIPTHGHTPGHQS+V+ET+ G +VLCGDACYLR+T+E+MHLP+  A++DE AMR SLE+LR LQRAGARLM+GHDP+FW DVPQ P+A+
Sbjct:  111 LIPNARWIIQQREWEAANTPEAIAANHYLVDDYDLGHVRIEVDGEYDVFGDGAVRCIPTHGHTPGHQSMVIETDAGSIVLCGDACYLRQTLEEMHLPSRGAIYDEVAMRASLESLRELQRAGARLMYGHDPDFWADVPQLPVAL 254          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A534QF14_9DELT (N-acyl homoserine lactonase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534QF14_9DELT)

HSP 1 Score: 185 bits (469), Expect = 3.090e-56
Identity = 85/143 (59.44%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAI 432
            IPN R + QRREW A +  +L+A NF++ R +D GHE +  DGEHD+FGDG V C+PT+GHTPGHQSL V    G VVL  DACYLR+T+E++HLPA   VHD +AM  SL  LR+LQ+AGAR+ +GHDPEFW  VPQAP  +
Sbjct:  111 IPNARVVVQRREWDAGHDADLMARNFFDARNYDTGHEVLAVDGEHDLFGDGRVVCLPTYGHTPGHQSLRVRLAGGDVVLTADACYLRRTLEELHLPAI--VHDPSAMLSSLHRLRALQQAGARIFYGHDPEFWATVPQAPAEV 251          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A534Z4K3_9DELT (N-acyl homoserine lactonase family protein n=3 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Z4K3_9DELT)

HSP 1 Score: 184 bits (467), Expect = 2.270e-55
Identity = 86/140 (61.43%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAP 423
            IPN R + QRREW A +  +L+A NFY+ R +D GHE +  DGEHD+FGDG V C+PT+GHTPGHQSL V    G VVL  DACYLR+T+E++HLPA   VHD  AM  SL  LR+LQ+AGAR+ +GHDPEFW  VPQAP
Sbjct:  156 IPNARVVVQRREWDAGHDTDLMARNFYDARNYDTGHEVLAVDGEHDLFGDGRVVCLPTYGHTPGHQSLRVRLGGGDVVLTADACYLRRTLEELHLPAI--VHDPPAMLASLHRLRALQQAGARIFYGHDPEFWATVPQAP 293          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A192IDT1_9HYPH (Lactamase_B domain-containing protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A192IDT1_9HYPH)

HSP 1 Score: 182 bits (462), Expect = 3.750e-55
Identity = 84/143 (58.74%), Postives = 106/143 (74.13%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAI 432
            +P+   + QRREW AAN P++ A   + +++FDHGH+RI ADGEHD+FGDG+V C+PT+GHTPGHQSL V T  G VVL GDACYLR+T+E+M LP    +HD   MR SL  L+ LQ  GAR+ +GHDPEFW  VPQAP A+
Sbjct:  112 LPDCPVVVQRREWEAANDPDMAAKIGFMKQDFDHGHDRILADGEHDIFGDGAVVCLPTYGHTPGHQSLKVRTAGGDVVLTGDACYLRRTLEEMRLPLI--LHDADEMRTSLRKLKELQDRGARIFYGHDPEFWATVPQAPAAV 252          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A259MX15_9PROT (Lactamase_B domain-containing protein n=11 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MX15_9PROT)

HSP 1 Score: 179 bits (455), Expect = 1.350e-53
Identity = 83/142 (58.45%), Postives = 102/142 (71.83%), Query Frame = 1
Query:    1 LIPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPL 426
            L+PN   + Q+REW AA  PEL A   + R +FDHGH   + DGEHD+FGDGSV CIPT+GHTPGHQSL V TE G +V+ GDACY  +T+ D  LP    V+D   M  SL+ L +L++AGARL FGHDPEFW+DVPQAP+
Sbjct:  151 LVPNATMVVQKREWQAAQDPELAAKVGFFRADFDHGHPVKQVDGEHDLFGDGSVVCIPTYGHTPGHQSLKVRTEAGEIVITGDACYFCRTLRDRRLPRF--VYDREQMLASLDRLEALEKAGARLFFGHDPEFWKDVPQAPV 290          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A523IIG5_9DELT (N-acyl homoserine lactonase family protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523IIG5_9DELT)

HSP 1 Score: 178 bits (451), Expect = 2.000e-53
Identity = 80/140 (57.14%), Postives = 102/140 (72.86%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAP 423
            +PN   + Q+REW A + P+ + AN+YN  ++D GH  +E +GEHD+FGDGSV C+PT GHTPGHQSL V T  G VVL  DACYLR+T+E++HLPA   VHD  AMR SL  LR L+ +GAR+ +GHDP+FW  VPQ P
Sbjct:  112 VPNATLVVQQREWTAGSEPDQIEANYYNPEDYDLGHAVLEIEGEHDLFGDGSVVCVPTWGHTPGHQSLRVRTHGGEVVLAADACYLRRTLEELHLPAT--VHDRQAMRASLLKLRMLRASGARIFYGHDPDFWASVPQLP 249          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A534ZI37_9DELT (N-acyl homoserine lactonase family protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534ZI37_9DELT)

HSP 1 Score: 176 bits (446), Expect = 6.750e-53
Identity = 80/143 (55.94%), Postives = 103/143 (72.03%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAI 432
            IPN   + QRREW A +  +L A NF++ + +D GH+ +  DGEHD+FGDGS+ C+PT+GHTPGHQSL V    G VVL  DACYLR+T+E +HLPA   VHD   M  SL  LR+LQ+AGAR+++GHDP+FW  VPQAP  +
Sbjct:   99 IPNAAIVVQRREWDAGHDADLAARNFFDAQNYDIGHDVVAVDGEHDLFGDGSIVCVPTYGHTPGHQSLRVRLAGGDVVLTADACYLRRTLEALHLPAI--VHDATQMLASLHRLRALQQAGARIVYGHDPDFWATVPQAPAVM 239          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: UPI001C233D11 (N-acyl homoserine lactonase family protein n=1 Tax=Burkholderia multivorans TaxID=87883 RepID=UPI001C233D11)

HSP 1 Score: 174 bits (442), Expect = 4.090e-52
Identity = 80/144 (55.56%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVV-LCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAI 432
            IPN R I Q+REW A + P+L+A+N Y + ++DHGH+    DGEHD+FGDGSV CIPT+GHTPGHQSL +   +G +V LCGDACYLR+ +++M LP  S VHD+  MR+SLE L  L++ GA++ +GHDPEFW  +P  P  I
Sbjct:  112 IPNARLIVQKREWDAGHEPDLIASNGYQQHDYDHGHDLELIDGEHDLFGDGSVVCIPTYGHTPGHQSLKLTLGSGRIVCLCGDACYLRRNLDEMRLP--SVVHDKVQMRESLERLSGLRKLGAQIFYGHDPEFWATLPAWPRRI 253          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A3D0I219_9DELT (MBL fold metallo-hydrolase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I219_9DELT)

HSP 1 Score: 173 bits (439), Expect = 1.130e-51
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAIV 435
            IPN R + Q  EW A   P+LV ANFY+ R++D GHE + A GEHD+FGDGSV C+PT GHTPGHQSL V      ++L  DACYLR+T++ + LPA +  HD   MR SL  LR+L++AGARL FGHDPE W  +PQAP AI+
Sbjct:  112 IPNARLVVQEAEWQAGRDPDLVRANFYDPRDYDLGHEILVARGEHDLFGDGSVLCLPTPGHTPGHQSLRVRLPKAEIILTADACYLRRTLDQLELPAFA--HDREQMRASLLRLRALEKAGARLFFGHDPEQWGSMPQAPRAIL 253          
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Match: A0A3C1N5I3_9GAMM (MBL fold metallo-hydrolase (Fragment) n=4 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3C1N5I3_9GAMM)

HSP 1 Score: 173 bits (438), Expect = 1.600e-51
Identity = 77/144 (53.47%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    4 IPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFGDGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAASAVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAIV 435
            + N R I Q+REW AA+ P+L+ +N +   ++DHGH+    +GEHD+F DGSV C+PT GHTPGHQSL V   +G ++L GDACYLRKT+ED+HLP    +HD   M +SL+ +R+LQ AGAR+ +GHD EFW  VPQAP  ++
Sbjct:  112 VTNARLIVQQREWTAAHEPDLIQSNGFALEDYDHGHDLDLINGEHDLFNDGSVVCVPTFGHTPGHQSLKVRLASGEILLAGDACYLRKTLEDLHLPRI--LHDREEMLESLKRIRALQAAGARIFYGHDAEFWETVPQAPAEVI 253          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104820.1028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DG81_9GAMM1.350e-7571.53MBL fold metallo-hydrolase n=1 Tax=Gammaproteobact... [more]
A0A534QF14_9DELT3.090e-5659.44N-acyl homoserine lactonase family protein n=1 Tax... [more]
A0A534Z4K3_9DELT2.270e-5561.43N-acyl homoserine lactonase family protein n=3 Tax... [more]
A0A192IDT1_9HYPH3.750e-5558.74Lactamase_B domain-containing protein n=2 Tax=Alph... [more]
A0A259MX15_9PROT1.350e-5358.45Lactamase_B domain-containing protein n=11 Tax=Alp... [more]
A0A523IIG5_9DELT2.000e-5357.14N-acyl homoserine lactonase family protein n=1 Tax... [more]
A0A534ZI37_9DELT6.750e-5355.94N-acyl homoserine lactonase family protein (Fragme... [more]
UPI001C233D114.090e-5255.56N-acyl homoserine lactonase family protein n=1 Tax... [more]
A0A3D0I219_9DELT1.130e-5156.94MBL fold metallo-hydrolase n=1 Tax=Deltaproteobact... [more]
A0A3C1N5I3_9GAMM1.600e-5153.47MBL fold metallo-hydrolase (Fragment) n=4 Tax=Gamm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104820contigM-pyrifera_M_contig104820:199..636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.8
Seed ortholog evalue7.4e-42
Seed eggNOG ortholog1205680.CAKO01000010_gene3910
Preferred nameattM
KEGG rclassRC00713
KEGG koko:K13075
KEGG ReactionR08970
KEGG Pathwayko02024,map02024
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Metallo-beta-lactamase superfamily
EggNOG OGs1PHBX@1224,2JWC2@204441,2TVDN@28211,COG0491@1,COG0491@2
EC3.1.1.81
COG Functional cat.S
Best tax levelRhodospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size438
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.6038938-CDS-M-pyrifera_M_contig104820:198..6361622815555.6038938-CDS-M-pyrifera_M_contig104820:198..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104820 199..636 -
1692277461.9387238-CDS-M-pyrifera_M_contig104820:198..6361692277461.9387238-CDS-M-pyrifera_M_contig104820:198..636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104820 199..636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104820.1028.1prot_M-pyrifera_M_contig104820.1028.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104820 199..636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104820.1028.1

>prot_M-pyrifera_M_contig104820.1028.1 ID=prot_M-pyrifera_M_contig104820.1028.1|Name=mRNA_M-pyrifera_M_contig104820.1028.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
LIPNGRWISQRREWGAANTPELVAANFYNRREFDHGHERIEADGEHDVFG
DGSVRCIPTHGHTPGHQSLVVETETGPVVLCGDACYLRKTIEDMHLPAAS
AVHDEAAMRKSLEALRSLQRAGARLMFGHDPEFWRDVPQAPLAIV*
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mRNA from alignment at M-pyrifera_M_contig104820:199..636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104820.1028.1 ID=mRNA_M-pyrifera_M_contig104820.1028.1|Name=mRNA_M-pyrifera_M_contig104820.1028.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig104820:199..636- (Macrocystis pyrifera P11B4 male)
CTGATCCCGAATGGACGCTGGATTAGCCAGAGGCGCGAGTGGGGCGCCGC GAACACGCCGGAGCTCGTCGCCGCGAATTTCTATAACCGCAGGGAATTCG ATCACGGCCACGAGCGCATCGAAGCGGACGGCGAACATGACGTGTTCGGC GATGGTTCGGTCCGGTGCATTCCGACGCACGGACATACGCCCGGTCACCA GTCGCTTGTCGTGGAAACGGAAACCGGGCCGGTCGTGTTGTGCGGCGATG CGTGTTACCTGCGCAAGACGATCGAGGACATGCATCTGCCGGCGGCGTCG GCCGTGCACGACGAAGCGGCGATGCGGAAATCGCTCGAAGCCCTGCGGTC GCTGCAGCGCGCGGGTGCGCGTCTCATGTTCGGTCACGATCCGGAGTTCT GGCGCGACGTACCGCAGGCCCCGCTGGCAATCGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104820:199..636-

>mRNA_M-pyrifera_M_contig104820.1028.1 ID=mRNA_M-pyrifera_M_contig104820.1028.1|Name=mRNA_M-pyrifera_M_contig104820.1028.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig104820:199..636- (Macrocystis pyrifera P11B4 male)
CTGATCCCGAATGGACGCTGGATTAGCCAGAGGCGCGAGTGGGGCGCCGC
GAACACGCCGGAGCTCGTCGCCGCGAATTTCTATAACCGCAGGGAATTCG
ATCACGGCCACGAGCGCATCGAAGCGGACGGCGAACATGACGTGTTCGGC
GATGGTTCGGTCCGGTGCATTCCGACGCACGGACATACGCCCGGTCACCA
GTCGCTTGTCGTGGAAACGGAAACCGGGCCGGTCGTGTTGTGCGGCGATG
CGTGTTACCTGCGCAAGACGATCGAGGACATGCATCTGCCGGCGGCGTCG
GCCGTGCACGACGAAGCGGCGATGCGGAAATCGCTCGAAGCCCTGCGGTC
GCTGCAGCGCGCGGGTGCGCGTCTCATGTTCGGTCACGATCCGGAGTTCT
GGCGCGACGTACCGCAGGCCCCGCTGGCAATCGTCTGACTGATCCCGAAT
GGACGCTGGATTAGCCAGAGGCGCGAGTGGGGCGCCGCGAACACGCCGGA
GCTCGTCGCCGCGAATTTCTATAACCGCAGGGAATTCGATCACGGCCACG
AGCGCATCGAAGCGGACGGCGAACATGACGTGTTCGGCGATGGTTCGGTC
CGGTGCATTCCGACGCACGGACATACGCCCGGTCACCAGTCGCTTGTCGT
GGAAACGGAAACCGGGCCGGTCGTGTTGTGCGGCGATGCGTGTTACCTGC
GCAAGACGATCGAGGACATGCATCTGCCGGCGGCGTCGGCCGTGCACGAC
GAAGCGGCGATGCGGAAATCGCTCGAAGCCCTGCGGTCGCTGCAGCGCGC
GGGTGCGCGTCTCATGTTCGGTCACGATCCGGAGTTCTGGCGCGACGTAC
CGCAGGCCCCGCTGGCAATCGTCTGA
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