mRNA_M-pyrifera_M_contig10482.1027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10482.1027.1
Unique NamemRNA_M-pyrifera_M_contig10482.1027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: D7G782_ECTSI (Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G782_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 3.470e-36
Identity = 62/101 (61.39%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREVDP 303
            +PLF++TDM KQG  LMKTLG+AVAML  M  L P+L++LGR+HV YGVT +MYPSV +ALL+T +KGLG ECT  T +AW W   +IS +CI AA EV P
Sbjct:   54 KPLFKDTDMDKQGEKLMKTLGVAVAMLNKMDTLKPILENLGRKHVDYGVTPEMYPSVGKALLITFEKGLGEECTPLTTKAWTWVFGIISSICIAAASEVKP 154          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: D7FYD1_ECTSI (GLOBIN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYD1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.820e-32
Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAARE 294
            +PLF++ DM+KQG  LMK +G+AV ML  M +  P+L  LG++HV YGVT DMYPSV  ALL+TL+KGLG EC Q T++AW W +  I+ VCI AARE
Sbjct:   46 KPLFKDVDMEKQGAKLMKVIGVAVMMLDKMDQFKPMLVKLGKKHVTYGVTDDMYPSVVSALLITLEKGLGEECHQLTKDAWAWVMNSIAAVCIAAARE 143          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: UPI0003FBB121 (globin domain-containing protein n=1 Tax=Mesorhizobium sp. WSM3224 TaxID=1040986 RepID=UPI0003FBB121)

HSP 1 Score: 95.9 bits (237), Expect = 3.030e-23
Identity = 51/97 (52.58%), Postives = 62/97 (63.92%), Query Frame = 1
Query:    7 LFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREV 297
            LF  TDM+KQG  LM  LG  V  L+  + +VP +Q L RRHV YGV    YP+V QAL+ TL+ GLG   T Q REAW  A  +++GV I AAREV
Sbjct:   41 LFRETDMRKQGAKLMAALGFVVHGLSRAETIVPAIQDLARRHVGYGVEEHHYPTVGQALIDTLEAGLGEAFTPQVREAWTEAYSLLAGVMIAAAREV 137          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A5C6AX78_9BACT (Flavohemoprotein n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6AX78_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 6.080e-23
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREVDP 303
            +PLF+  DMK+QG  LM  L LAV  LT +  +VP +Q LGRRHV YGV  + Y +V +ALL TLDKGLG   T+  +EAW      +S V +DAA E +P
Sbjct:   39 KPLFKG-DMKEQGKKLMAMLNLAVTSLTKLDAIVPAVQDLGRRHVQYGVPDESYQTVGEALLWTLDKGLGEAFTEDVKEAWTQTYVTLSTVMLDAAHESEP 138          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A090GVY7_MESPL (Globin n=17 Tax=Mesorhizobium TaxID=68287 RepID=A0A090GVY7_MESPL)

HSP 1 Score: 94.7 bits (234), Expect = 8.620e-23
Identity = 50/99 (50.51%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREV 297
            +PLF  TDMKKQG  LM  LG     L+  + ++P +Q L RRHV YGV    Y +V QAL+ TLD GLG   TQ+ REAW  A  +++GV I AAR+V
Sbjct:   39 KPLFRETDMKKQGAKLMAALGFVTHGLSRAETILPTVQDLARRHVGYGVEEHHYATVGQALIETLDAGLGETFTQEVREAWAAAYGLLAGVMIAAARDV 137          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A2S0VMR3_9ALTE (Hemin receptor n=1 Tax=Saccharobesus litoralis TaxID=2172099 RepID=A0A2S0VMR3_9ALTE)

HSP 1 Score: 94.4 bits (233), Expect = 1.860e-22
Identity = 46/98 (46.94%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAARE 294
            +P+F++TDMK+QG  LM+T+GLAV  L+N++ +VPV+Q LG +H+ YGV  + +P VA+ALL TL++GLG    ++ + AW  A  V++   IDA  E
Sbjct:   39 KPMFKSTDMKEQGKKLMQTIGLAVNGLSNLESIVPVVQQLGVKHIDYGVKDEHFPIVAEALLWTLEQGLGDAWNEEVKGAWVEAYTVLANTMIDAMNE 136          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A517SRN2_9BACT (Bacterial hemoglobin n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A517SRN2_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 3.290e-22
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREVD 300
            +PLF+  DMK+QG  LM TL LAVA LT +++++P +Q+LGRRHV YGV  + Y +V QALL TL+KGLG   T + +EAW      +S V I+A +  +
Sbjct:   39 KPLFKG-DMKEQGKKLMATLSLAVASLTKLEEILPAVQALGRRHVEYGVPEESYQTVGQALLDTLNKGLGDAFTDEVKEAWTQTYVTLSTVMIEAGKTAE 137          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A3P3FEA3_9HYPH (Hemin receptor n=10 Tax=Mesorhizobium TaxID=68287 RepID=A0A3P3FEA3_9HYPH)

HSP 1 Score: 92.4 bits (228), Expect = 6.960e-22
Identity = 50/97 (51.55%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    7 LFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREV 297
            LF  TDM KQG  LM  LG  V  L+  + ++P +Q L RRHV YGV    YP V QAL+ TL+ GLG   T Q REAW  A  +++GV I AAREV
Sbjct:   41 LFRATDMSKQGAKLMAALGFVVHGLSRAETILPTVQDLARRHVGYGVEEHHYPIVGQALIETLEAGLGEAFTPQVREAWQAAYSLLAGVMIAAAREV 137          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: A0A251X1E6_9RHOB (Hemin receptor n=1 Tax=Marivivens niveibacter TaxID=1930667 RepID=A0A251X1E6_9RHOB)

HSP 1 Score: 92.4 bits (228), Expect = 6.960e-22
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAA 288
            QP+F+  DM  QG  LM TLG+ V  L ++ K+VPV Q L  +HV YGVTA+ Y  V QALL TL+KGLG + T +T++AW  A   +SGV IDAA
Sbjct:   39 QPMFKG-DMADQGKKLMTTLGVVVNSLRDLPKIVPVAQQLAVKHVDYGVTAEHYAPVGQALLDTLEKGLGDDFTPETKDAWVTAYTTLSGVMIDAA 133          
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Match: UPI001E59DC08 (globin domain-containing protein n=1 Tax=Stieleria sp. JC731 TaxID=2894195 RepID=UPI001E59DC08)

HSP 1 Score: 92.0 bits (227), Expect = 1.070e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:    1 QPLFENTDMKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVAQALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREVD 300
            +PLF+  DMK+QG  LM TL LAV  LT +++++P +Q LGRRHV YGV  + Y +VAQALL TL++GLG   T + + AW      +S V ++AA E D
Sbjct:   39 KPLFKG-DMKEQGKKLMATLNLAVVSLTKLEEILPAVQDLGRRHVKYGVPDESYQTVAQALLWTLEQGLGDGFTPEVKAAWTKTYVTLSNVMLEAAHEGD 137          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10482.1027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G782_ECTSI3.470e-3661.39Globin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
D7FYD1_ECTSI1.820e-3258.16GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
UPI0003FBB1213.030e-2352.58globin domain-containing protein n=1 Tax=Mesorhizo... [more]
A0A5C6AX78_9BACT6.080e-2350.50Flavohemoprotein n=1 Tax=Rhodopirellula pilleata T... [more]
A0A090GVY7_MESPL8.620e-2350.51Globin n=17 Tax=Mesorhizobium TaxID=68287 RepID=A0... [more]
A0A2S0VMR3_9ALTE1.860e-2246.94Hemin receptor n=1 Tax=Saccharobesus litoralis Tax... [more]
A0A517SRN2_9BACT3.290e-2249.00Bacterial hemoglobin n=2 Tax=Planctomycetes TaxID=... [more]
A0A3P3FEA3_9HYPH6.960e-2251.55Hemin receptor n=10 Tax=Mesorhizobium TaxID=68287 ... [more]
A0A251X1E6_9RHOB6.960e-2253.13Hemin receptor n=1 Tax=Marivivens niveibacter TaxI... [more]
UPI001E59DC081.070e-2149.00globin domain-containing protein n=1 Tax=Stieleria... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10482contigM-pyrifera_M_contig10482:7389..7691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.9
Seed ortholog evalue1.1e-14
Seed eggNOG ortholog1040986.ATYO01000003_gene5830
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the globin family
EggNOG OGs1QVJP@1224,2U5M6@28211,COG1017@1,COG1017@2
COG Functional cat.C
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size303
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.5274587-CDS-M-pyrifera_M_contig10482:7388..76671622815555.5274587-CDS-M-pyrifera_M_contig10482:7388..7667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10482 7389..7667 -
1692277461.9136066-CDS-M-pyrifera_M_contig10482:7388..76671692277461.9136066-CDS-M-pyrifera_M_contig10482:7388..7667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10482 7389..7667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.5511026-UTR-M-pyrifera_M_contig10482:7667..76911622815555.5511026-UTR-M-pyrifera_M_contig10482:7667..7691Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10482 7668..7691 -
1692277461.9292612-UTR-M-pyrifera_M_contig10482:7667..76911692277461.9292612-UTR-M-pyrifera_M_contig10482:7667..7691Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10482 7668..7691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10482.1027.1prot_M-pyrifera_M_contig10482.1027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10482 7389..7667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10482.1027.1

>prot_M-pyrifera_M_contig10482.1027.1 ID=prot_M-pyrifera_M_contig10482.1027.1|Name=mRNA_M-pyrifera_M_contig10482.1027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MKKQGLMLMKTLGLAVAMLTNMQKLVPVLQSLGRRHVAYGVTADMYPSVA
QALLLTLDKGLGGECTQQTREAWDWALEVISGVCIDAAREVDP
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mRNA from alignment at M-pyrifera_M_contig10482:7389..7691-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10482.1027.1 ID=mRNA_M-pyrifera_M_contig10482.1027.1|Name=mRNA_M-pyrifera_M_contig10482.1027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig10482:7389..7691- (Macrocystis pyrifera P11B4 male)
CAGCCGTTGTTCGAGAACACCGACATGAAGAAGCAGGGTCTCATGCTCAT GAAGACCTTGGGTCTCGCGGTGGCCATGCTGACCAACATGCAGAAGCTCG TCCCCGTCCTGCAAAGCCTGGGCCGCAGGCATGTCGCGTACGGGGTGACG GCCGACATGTACCCCTCCGTGGCGCAGGCGTTGCTGCTGACCCTCGACAA GGGACTGGGGGGCGAGTGCACCCAGCAGACGAGGGAGGCGTGGGATTGGG CGCTGGAGGTGATCTCGGGCGTCTGCATAGATGCGGCTAGGGAGGTCGAC CCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10482:7389..7691-

>mRNA_M-pyrifera_M_contig10482.1027.1 ID=mRNA_M-pyrifera_M_contig10482.1027.1|Name=mRNA_M-pyrifera_M_contig10482.1027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig10482:7389..7691- (Macrocystis pyrifera P11B4 male)
ATGAAGAAGCAGGGTCTCATGCTCATGAAGACCTTGGGTCTCGCGGTGGC
CATGCTGACCAACATGCAGAAGCTCGTCCCCGTCCTGCAAAGCCTGGGCC
GCAGGCATGTCGCGTACGGGGTGACGGCCGACATGTACCCCTCCGTGGCG
CAGGCGTTGCTGCTGACCCTCGACAAGGGACTGGGGGGCGAGTGCACCCA
GCAGACGAGGGAGGCGTGGGATTGGGCGCTGGAGGTGATCTCGGGCGTCT
GCATAGATGCGGCTAGGGAGGTCGACCCTATGAAGAAGCAGGGTCTCATG
CTCATGAAGACCTTGGGTCTCGCGGTGGCCATGCTGACCAACATGCAGAA
GCTCGTCCCCGTCCTGCAAAGCCTGGGCCGCAGGCATGTCGCGTACGGGG
TGACGGCCGACATGTACCCCTCCGTGGCGCAGGCGTTGCTGCTGACCCTC
GACAAGGGACTGGGGGGCGAGTGCACCCAGCAGACGAGGGAGGCGTGGGA
TTGGGCGCTGGAGGTGATCTCGGGCGTCTGCATAGATGCGGCTAGGGAGG
TCGACCCT
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