mRNA_M-pyrifera_M_contig104815.1026.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104815.1026.1
Unique NamemRNA_M-pyrifera_M_contig104815.1026.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: UPI00145ADEF1 (peroxisomal sarcosine oxidase n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145ADEF1)

HSP 1 Score: 98.6 bits (244), Expect = 2.200e-21
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   64 HLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            H+Y  P+ EYPGL+K   H   P +  H    ++RS   +  +L R    V+R +P  +PEP   E+C+YT+T + HF+LDV P H  +V+G G SGH FK GPI+G+IL +L
Sbjct:  257 HIYGLPSNEYPGLVKICLHTGSPTDPDHRDRQTDRS---DVDILRRY---VSRSIPGLEPEPAIVESCMYTMTPDDHFVLDVHPQHRNIVIGAGFSGHGFKFGPIIGKILCEL 363          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: H2MF46_ORYLA (Sarcosine oxidase n=5 Tax=Oryzias latipes TaxID=8090 RepID=H2MF46_ORYLA)

HSP 1 Score: 95.9 bits (237), Expect = 2.130e-20
Identity = 50/132 (37.88%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 RNFPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            + FP  ++   ++      H+Y  PA EYPG++K   H   P +        +RS       +  +Q  V+R  P   PEP   E+CLYTVT ++HF+LD  P +  +V+G G SGH FK GPI+G+IL DL
Sbjct:  240 QKFPCFLQIEGEKSKE---HIYGLPANEYPGMVKICLHAGSPADPDQRDQQKDRSD------IETLQRFVSRRFPGLVPEPAVVESCLYTVTPDNHFVLDYHPAYRNIVIGAGFSGHGFKFGPIVGQILCDL 362          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A6J2VNQ2_CHACN (Sarcosine oxidase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VNQ2_CHACN)

HSP 1 Score: 94.0 bits (232), Expect = 1.060e-19
Identity = 49/132 (37.12%), Postives = 70/132 (53.03%), Query Frame = 1
Query:    7 RNFPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            R FP  ++  +    H   H+Y  P+ EYPGL+K   H       G  T    R    +K  +  +   +AR  P  +P P   ETCLYT T ++HF+LD  P H  +++G G SGH FK GP++G+IL +L
Sbjct:  238 RRFPCFVQVESKESKH---HIYGFPSNEYPGLMKVCYHA------GSETNPDFRDKQTDKTDIDIISRYIARCFPALEPIPAVVETCLYTNTPDTHFVLDRHPTHSNIIIGAGFSGHGFKFGPLIGKILYEL 360          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: H2RK59_TAKRU (Sarcosine oxidase n=3 Tax=Takifugu TaxID=31032 RepID=H2RK59_TAKRU)

HSP 1 Score: 93.6 bits (231), Expect = 1.500e-19
Identity = 54/131 (41.22%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   13 FPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAH-GEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            FP  I    +   H   H+Y  P+ EYPGL+K   H G           ASE      KR +ARV       LP   PEP   ETC+YT+T +SHF+LD  P H  +V+G G SGH FK GP++G++L +L
Sbjct:  242 FPCFILTEGEESEH---HIYGLPSHEYPGLVKVCNHLGVRTDPDQRDRDASEWDVEVLKRFVARV-------LPGLVPEPAVVETCMYTMTPDSHFVLDRHPAHSNIVIGAGFSGHGFKFGPLIGKLLCEL 362          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A1S3T1N6_SALSA (Sarcosine oxidase n=19 Tax=Salmonidae TaxID=8015 RepID=A0A1S3T1N6_SALSA)

HSP 1 Score: 92.8 bits (229), Expect = 2.810e-19
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   13 FPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            FP  I+  ++   H   H+Y  P+ EYPGL+K   H       G  T   ER    ++  +  +Q  + R  P   P P   E+C+YTVT ++HF+LD+ P H  +V+G G SGH FK GPI+G++L +L
Sbjct:  240 FPCFIQLESEEAKH---HIYGLPSNEYPGLMKICYHT------GAETDPDERDRQTDRGDIDILQRYITRCFPGLVPIPAVVESCMYTVTPDNHFVLDLHPTHSNIVIGAGFSGHGFKFGPIVGKLLCEL 360          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A3P8V3M5_CYNSE (Sarcosine oxidase n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8V3M5_CYNSE)

HSP 1 Score: 92.8 bits (229), Expect = 2.810e-19
Identity = 49/132 (37.12%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    7 RNFPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            + FP  ++  +   +    H+Y  P+ EYPGL+K   H   P +       ++RS   +  +L R    + R +P   PEP   E+C+YTVT +SHF+LD  P H  +V+G G SGH FK GPI+G++L++L
Sbjct:  238 KRFPSFLQLDSKETMD---HIYGLPSQEYPGLMKICLHTGSPTDPDQRDKQTDRS---DIDILRRY---ITRCIPGLHPEPAVVESCMYTVTPDSHFVLDCHPEHRNIVIGAGFSGHGFKFGPIIGKLLSEL 360          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A3B3BR88_ORYME (Sarcosine oxidase n=2 Tax=Oryzias TaxID=8089 RepID=A0A3B3BR88_ORYME)

HSP 1 Score: 92.8 bits (229), Expect = 2.860e-19
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    7 RNFPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADL 402
            ++FP  ++   +     + H+Y  PA EYPG++K   H       G  T   +R    ++  +  +Q  V+R  P    EP   E+CLYTVT + HF+LD  P +  +V+G G SGH FK GP++G+IL DL
Sbjct:  240 QSFPCFLQTEGEE---SSDHIYGLPANEYPGMVKICLHA------GSNTDPDQRDQQTDRSDIETLQRFVSRRFPGLFSEPAVVESCLYTVTPDDHFVLDHHPAYRNIVIGAGFSGHGFKFGPVVGQILCDL 362          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A6P8HQH0_ACTTE (Sarcosine oxidase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HQH0_ACTTE)

HSP 1 Score: 92.4 bits (228), Expect = 4.050e-19
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   13 FPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADLCFTGKSDWENEVYKL 447
            FP  I Y  D       H+Y  P FE+PGLIK   HG  P         S      +++ + +    +++     DP P   +TC+YTVT +S F+LD  P+H  +V+G G SGH FK  P++G+IL  L    +  +E   +K+
Sbjct:  241 FPGFILYLEDLDGLGHEHVYGFPVFEFPGLIKICHHGGVPVS----GPQSRDDMRKDEKYIDKTSKCISKRFVGIDPNPKIVDTCMYTVTPDSSFVLDYHPSHSNIVIGAGFSGHGFKMAPLVGKILYQLALGERPSYEMGPFKI 381          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: V4XYL1_9ARCH (FAD dependent oxidoreductase (Fragment) n=1 Tax=uncultured archaeon A07HB70 TaxID=1412872 RepID=V4XYL1_9ARCH)

HSP 1 Score: 89.7 bits (221), Expect = 5.230e-19
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 1
Query:   61 GHLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADLCFTGKSDWENEVYKL 447
            GH Y+TP +  PG  K G H    +       A  R    ++R+L   ++   R+ P A    +  ETCLYT + +  F++DVLP+ PRV VG G SGH FK  P++GEILADL   G+SD   +++ L
Sbjct:  103 GHFYATPVYGVPGF-KLGKHHHLGETVDPDDVADPRPA--DERVL---RSFAERYFPGAAGPTMGLETCLYTNSPDGEFVVDVLPDDPRVAVGAGFSGHGFKFSPVVGEILADLAIHGESDHPTDIFGL 225          
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Match: A0A6P8TD22_GYMAC (Sarcosine oxidase n=5 Tax=Notothenioidei TaxID=8205 RepID=A0A6P8TD22_GYMAC)

HSP 1 Score: 89.4 bits (220), Expect = 5.230e-18
Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   64 HLYSTPAFEYPGLIKAGAHGEYPKEYGHFTTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFLLDVLPNHPRVVVGGGGSGHAFKHGPILGEILADLCFTGKSDWENEVYKLK 450
            H+Y  P+ EYPGL+K   H       G  T    R    ++  +  +Q  VAR  P   PEP   E+C+YT+T +SHF+LD  P +  +V G G SGH FK GPI+G++L +L       ++   ++++
Sbjct:  256 HIYGLPSNEYPGLVKICYH------VGGETDPDHRDKQTDRSDIGILQRFVARCFPGLIPEPAVVESCMYTLTPDSHFVLDCHPAYSNIVFGAGFSGHGFKFGPIIGKLLCELSLGEVPSYDMSPFRIR 378          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104815.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00145ADEF12.200e-2143.36peroxisomal sarcosine oxidase n=1 Tax=Periophthalm... [more]
H2MF46_ORYLA2.130e-2037.88Sarcosine oxidase n=5 Tax=Oryzias latipes TaxID=80... [more]
A0A6J2VNQ2_CHACN1.060e-1937.12Sarcosine oxidase n=1 Tax=Chanos chanos TaxID=2914... [more]
H2RK59_TAKRU1.500e-1941.22Sarcosine oxidase n=3 Tax=Takifugu TaxID=31032 Rep... [more]
A0A1S3T1N6_SALSA2.810e-1937.69Sarcosine oxidase n=19 Tax=Salmonidae TaxID=8015 R... [more]
A0A3P8V3M5_CYNSE2.810e-1937.12Sarcosine oxidase n=1 Tax=Cynoglossus semilaevis T... [more]
A0A3B3BR88_ORYME2.860e-1936.36Sarcosine oxidase n=2 Tax=Oryzias TaxID=8089 RepID... [more]
A0A6P8HQH0_ACTTE4.050e-1933.79Sarcosine oxidase n=1 Tax=Actinia tenebrosa TaxID=... [more]
V4XYL1_9ARCH5.230e-1939.53FAD dependent oxidoreductase (Fragment) n=1 Tax=un... [more]
A0A6P8TD22_GYMAC5.230e-1835.66Sarcosine oxidase n=5 Tax=Notothenioidei TaxID=820... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104815contigM-pyrifera_M_contig104815:2..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score94.4
Seed ortholog evalue5.3e-17
Seed eggNOG ortholog8090.ENSORLP00000017216
Preferred namePIPOX
KEGG rclassRC00060,RC00083,RC00557
KEGG koko:K00306
KEGG ReactionR00610,R02204
KEGG Pathwayko00260,ko00310,ko01100,ko04146,map00260,map00310,map01100,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006084,GO:0006139,GO:0006163,GO:0006520,GO:0006553,GO:0006554,GO:0006605,GO:0006625,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008115,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009066,GO:0009068,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0015031,GO:0015833,GO:0016043,GO:0016054,GO:0016491,GO:0016645,GO:0016647,GO:0017144,GO:0019474,GO:0019477,GO:0019637,GO:0019693,GO:0019752,GO:0031907,GO:0031974,GO:0033036,GO:0033365,GO:0033514,GO:0033865,GO:0033875,GO:0034032,GO:0034613,GO:0034641,GO:0035383,GO:0042579,GO:0042737,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046440,GO:0046483,GO:0046907,GO:0050031,GO:0051179,GO:0051186,GO:0051234,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072594,GO:0072662,GO:0072663,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
EggNOG free text desc.Pipecolic acid oxidase
EggNOG OGs38FEG@33154,3BEMY@33208,3CWKI@33213,48ATM@7711,48VKB@7742,49ST0@7898,COG0665@1,KOG2820@2759
EC1.5.3.1,1.5.3.7
COG Functional cat.E
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.4921243-CDS-M-pyrifera_M_contig104815:1..4811622815555.4921243-CDS-M-pyrifera_M_contig104815:1..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104815 2..481 +
1692277461.9001272-CDS-M-pyrifera_M_contig104815:1..4811692277461.9001272-CDS-M-pyrifera_M_contig104815:1..481Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104815 2..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104815.1026.1prot_M-pyrifera_M_contig104815.1026.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104815 2..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104815.1026.1

>prot_M-pyrifera_M_contig104815.1026.1 ID=prot_M-pyrifera_M_contig104815.1026.1|Name=mRNA_M-pyrifera_M_contig104815.1026.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
DYRNFPVLIEYANDRPLHEAGHLYSTPAFEYPGLIKAGAHGEYPKEYGHF
TTASERSFAYNKRLLARVQADVARHLPLADPEPVSSETCLYTVTRESHFL
LDVLPNHPRVVVGGGGSGHAFKHGPILGEILADLCFTGKSDWENEVYKLK
YHLDLPANL*
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mRNA from alignment at M-pyrifera_M_contig104815:2..481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104815.1026.1 ID=mRNA_M-pyrifera_M_contig104815.1026.1|Name=mRNA_M-pyrifera_M_contig104815.1026.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig104815:2..481+ (Macrocystis pyrifera P11B4 male)
GACTACCGCAACTTCCCGGTGCTGATCGAGTACGCCAACGACAGGCCGCT GCACGAGGCGGGCCATCTCTACAGCACGCCGGCGTTCGAGTACCCGGGCC TCATCAAGGCGGGCGCGCACGGCGAGTACCCCAAGGAGTACGGCCACTTC ACCACCGCCTCGGAGCGCTCCTTTGCATACAACAAGCGCCTCCTCGCCCG CGTGCAGGCGGACGTCGCCCGCCACCTCCCCCTCGCCGACCCGGAGCCGG TGTCGAGCGAGACGTGCCTCTACACGGTGACGCGCGAGTCGCACTTCCTA CTGGACGTGCTGCCCAACCATCCGCGGGTTGTGGTGGGCGGCGGCGGCTC TGGCCACGCCTTCAAGCACGGCCCCATCCTTGGCGAAATCCTCGCCGATC TCTGCTTCACTGGAAAGTCCGATTGGGAGAACGAGGTCTACAAGCTCAAG TACCACCTCGACCTGCCCGCCAATCTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104815:2..481+

>mRNA_M-pyrifera_M_contig104815.1026.1 ID=mRNA_M-pyrifera_M_contig104815.1026.1|Name=mRNA_M-pyrifera_M_contig104815.1026.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig104815:2..481+ (Macrocystis pyrifera P11B4 male)
GACTACCGCAACTTCCCGGTGCTGATCGAGTACGCCAACGACAGGCCGCT
GCACGAGGCGGGCCATCTCTACAGCACGCCGGCGTTCGAGTACCCGGGCC
TCATCAAGGCGGGCGCGCACGGCGAGTACCCCAAGGAGTACGGCCACTTC
ACCACCGCCTCGGAGCGCTCCTTTGCATACAACAAGCGCCTCCTCGCCCG
CGTGCAGGCGGACGTCGCCCGCCACCTCCCCCTCGCCGACCCGGAGCCGG
TGTCGAGCGAGACGTGCCTCTACACGGTGACGCGCGAGTCGCACTTCCTA
CTGGACGTGCTGCCCAACCATCCGCGGGTTGTGGTGGGCGGCGGCGGCTC
TGGCCACGCCTTCAAGCACGGCCCCATCCTTGGCGAAATCCTCGCCGATC
TCTGCTTCACTGGAAAGTCCGATTGGGAGAACGAGGTCTACAAGCTCAAG
TACCACCTCGACCTGCCCGCCAATCTATGAGACTACCGCAACTTCCCGGT
GCTGATCGAGTACGCCAACGACAGGCCGCTGCACGAGGCGGGCCATCTCT
ACAGCACGCCGGCGTTCGAGTACCCGGGCCTCATCAAGGCGGGCGCGCAC
GGCGAGTACCCCAAGGAGTACGGCCACTTCACCACCGCCTCGGAGCGCTC
CTTTGCATACAACAAGCGCCTCCTCGCCCGCGTGCAGGCGGACGTCGCCC
GCCACCTCCCCCTCGCCGACCCGGAGCCGGTGTCGAGCGAGACGTGCCTC
TACACGGTGACGCGCGAGTCGCACTTCCTACTGGACGTGCTGCCCAACCA
TCCGCGGGTTGTGGTGGGCGGCGGCGGCTCTGGCCACGCCTTCAAGCACG
GCCCCATCCTTGGCGAAATCCTCGCCGATCTCTGCTTCACTGGAAAGTCC
GATTGGGAGAACGAGGTCTACAAGCTCAAGTACCACCTCGACCTGCCCGC
CAATCTATGA
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