mRNA_M-pyrifera_M_contig104813.1025.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104813.1025.1
Unique NamemRNA_M-pyrifera_M_contig104813.1025.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig104813.1025.1 vs. uniprot
Match: A0A7S1Y9T4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9T4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.140e-7
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:  121 VLYPGSHRHLTAAVAFDSVLFVDCDKRVAETFASAESRSFVE--ELRGAPGNWRFECANYEGPIPGAEDAGHDVLLS 345
            V YPG HRHLTAA+AF  V FVD DK+V+  +    +R +V+  +L      +RF C +     P      +D+L+S
Sbjct:    8 VFYPGCHRHLTAALAFPDVTFVDFDKKVSPLYDDPTAREYVDTYKLYDEASQYRFYCYDVHKQPPKKARQDYDLLVS 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig104813.1025.1 vs. uniprot
Match: A0A3M7PZ70_BRAPC (Uncharacterized protein n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7PZ70_BRAPC)

HSP 1 Score: 52.4 bits (124), Expect = 1.490e-5
Identity = 24/65 (36.92%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:   52 DWHLPLFRAVADWANARQGAPLQVLYPGSHRHLTAAVAFDSVLFVDCDKRVAETFASAESRSFVE 246
            DWHLP+FRAV ++  A++     VLYPGS++H++ ++   +V + D D ++ + F   E   +VE
Sbjct:   16 DWHLPIFRAVQEFTEAKR-----VLYPGSYKHISPSLFLPNVTYNDFDIKMKQFFDDEEVLKWVE 75
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104813.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S1Y9T4_9STRA1.140e-738.96Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A3M7PZ70_BRAPC1.490e-536.92Uncharacterized protein n=1 Tax=Brachionus plicati... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104813contigM-pyrifera_M_contig104813:1..345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog55529.EKX37714
Hectar predicted targeting categoryother localisation
EggNOG OGs2CAAY@1,2T1IA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.4560328-CDS-M-pyrifera_M_contig104813:0..3451622815555.4560328-CDS-M-pyrifera_M_contig104813:0..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104813 1..345 -
1692277461.8886619-CDS-M-pyrifera_M_contig104813:0..3451692277461.8886619-CDS-M-pyrifera_M_contig104813:0..345Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104813 1..345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104813.1025.1prot_M-pyrifera_M_contig104813.1025.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104813 1..345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104813.1025.1

>prot_M-pyrifera_M_contig104813.1025.1 ID=prot_M-pyrifera_M_contig104813.1025.1|Name=mRNA_M-pyrifera_M_contig104813.1025.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
MAGLRAYKRSYWGGGPADWHLPLFRAVADWANARQGAPLQVLYPGSHRHL
TAAVAFDSVLFVDCDKRVAETFASAESRSFVEELRGAPGNWRFECANYEG
PIPGAEDAGHDVLLS
back to top

mRNA from alignment at M-pyrifera_M_contig104813:1..345-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104813.1025.1 ID=mRNA_M-pyrifera_M_contig104813.1025.1|Name=mRNA_M-pyrifera_M_contig104813.1025.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig104813:1..345- (Macrocystis pyrifera P11B4 male)
ATGGCGGGGCTGCGCGCGTACAAGCGCTCCTATTGGGGGGGCGGGCCCGC
AGACTGGCACCTACCACTGTTCAGAGCCGTGGCCGACTGGGCCAACGCAC
GGCAAGGGGCACCACTGCAAGTGCTCTACCCAGGATCGCACAGACACCTC
ACCGCGGCCGTCGCATTTGACAGCGTGTTGTTCGTGGACTGCGACAAGAG
GGTAGCGGAAACCTTTGCCTCCGCCGAGAGCCGCTCCTTCGTGGAGGAGC
TCCGCGGCGCTCCTGGCAACTGGCGCTTCGAGTGTGCCAACTACGAAGGG
CCCATCCCCGGCGCAGAGGATGCCGGCCACGACGTGCTGCTGTCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig104813:1..345-

>mRNA_M-pyrifera_M_contig104813.1025.1 ID=mRNA_M-pyrifera_M_contig104813.1025.1|Name=mRNA_M-pyrifera_M_contig104813.1025.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig104813:1..345- (Macrocystis pyrifera P11B4 male)
ATGGCGGGGCTGCGCGCGTACAAGCGCTCCTATTGGGGGGGCGGGCCCGC
AGACTGGCACCTACCACTGTTCAGAGCCGTGGCCGACTGGGCCAACGCAC
GGCAAGGGGCACCACTGCAAGTGCTCTACCCAGGATCGCACAGACACCTC
ACCGCGGCCGTCGCATTTGACAGCGTGTTGTTCGTGGACTGCGACAAGAG
GGTAGCGGAAACCTTTGCCTCCGCCGAGAGCCGCTCCTTCGTGGAGGAGC
TCCGCGGCGCTCCTGGCAACTGGCGCTTCGAGTGTGCCAACTACGAAGGG
CCCATCCCCGGCGCAGAGGATGCCGGCCACGACGTGCTGCTGTCGATGGC
GGGGCTGCGCGCGTACAAGCGCTCCTATTGGGGGGGCGGGCCCGCAGACT
GGCACCTACCACTGTTCAGAGCCGTGGCCGACTGGGCCAACGCACGGCAA
GGGGCACCACTGCAAGTGCTCTACCCAGGATCGCACAGACACCTCACCGC
GGCCGTCGCATTTGACAGCGTGTTGTTCGTGGACTGCGACAAGAGGGTAG
CGGAAACCTTTGCCTCCGCCGAGAGCCGCTCCTTCGTGGAGGAGCTCCGC
GGCGCTCCTGGCAACTGGCGCTTCGAGTGTGCCAACTACGAAGGGCCCAT
CCCCGGCGCAGAGGATGCCGGCCACGACGTGCTGCTGTCG
back to top