mRNA_M-pyrifera_M_contig104780.1023.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104780.1023.1
Unique NamemRNA_M-pyrifera_M_contig104780.1023.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: D8LKV1_ECTSI (Coiled-coil domain-containing protein 94 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKV1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.150e-37
Identity = 66/77 (85.71%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEEAQTERVQDKEVSNKL 234
            +GTRFNATKDQAGTYYSTKIW+FSMKCPSCS VM IKTDPKNT YEYVEGIRKKDM FDPEEA+T+RVQD EVS +L
Sbjct:   62 RGTRFNATKDQAGTYYSTKIWQFSMKCPSCSNVMVIKTDPKNTGYEYVEGIRKKDMEFDPEEAETQRVQDSEVSKQL 138          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A835Z9T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9T3_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.990e-20
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEEAQTERVQDKEVSNKL 234
            +GTRFNA K++AG Y++T +W F M+CPSCST   IKTDPKN+DYE+  GIR+K+  FD E+A+   + D++   +L
Sbjct:   62 KGTRFNAKKEKAGAYFTTTVWAFHMRCPSCSTEFVIKTDPKNSDYEFSAGIRRKEQHFDAEDAEAPVLADEDTQARL 138          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: W7TDI8_9STRA (Coiled-coil domain-containing protein 130 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDI8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.080e-19
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPE 186
            +G RFNA K QAG Y+STKIWEF MKC SC   + I+TDPKN DYE+VEGIR+++  +DPE
Sbjct:   61 KGVRFNAKKIQAGNYFSTKIWEFHMKCASCKNRLVIRTDPKNCDYEFVEGIRRREQEYDPE 121          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A1Y2I388_9FUNG (CWC16 protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2I388_9FUNG)

HSP 1 Score: 83.2 bits (204), Expect = 4.200e-17
Identity = 40/76 (52.63%), Postives = 51/76 (67.11%), Query Frame = 1
Query:    7 GTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEEAQTERVQDKEVSNKL 234
            GTR+NA K +AG YYST IW F MKC  C    +I+TDPKN +YE VEG RK+   FDPE+AQ   V  ++ + +L
Sbjct:   64 GTRYNAEKKKAGNYYSTPIWSFRMKCHLCPNWFEIRTDPKNAEYEIVEGARKRVEEFDPEDAQVMAVNSEDNAERL 139          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A0P1AVX0_PLAHL (C2C2-type Zn-finger protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AVX0_PLAHL)

HSP 1 Score: 82.4 bits (202), Expect = 4.250e-17
Identity = 41/77 (53.25%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEEAQTERVQDKEVSNKL 234
            +G RFNA K QAG Y+ST IWEFS+KCPSCS  M IKTDPK  DYE V G+++K       + QTE++ + E++ +L
Sbjct:   68 RGVRFNARKKQAGRYFSTVIWEFSLKCPSCSGEMIIKTDPKARDYELVSGVKQKADMKVAGDMQTEKLNEPEIAARL 144          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: R9PCQ9_PSEHS (Uncharacterized protein n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9PCQ9_PSEHS)

HSP 1 Score: 80.5 bits (197), Expect = 2.240e-16
Identity = 38/63 (60.32%), Postives = 45/63 (71.43%), Query Frame = 1
Query:    1 SQGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEE 189
            SQG RFNA K QAG Y STKIW F++KCPSCS  ++I+TDPKN  Y    G RK+   +DPEE
Sbjct:   60 SQGLRFNAEKQQAGEYLSTKIWSFAVKCPSCSGRIEIRTDPKNAQYVVESGARKQQQDWDPEE 122          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A3P3YBS5_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YBS5_PLABS)

HSP 1 Score: 80.9 bits (198), Expect = 2.300e-16
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFDPEEAQTERVQDKEVSNKL 234
            +G RFNA K   G Y++TKIWEF+MKCPSCS V+ ++TDPKNT+Y  V G R+K   FD ++A+     D E   K+
Sbjct:   64 KGVRFNAEKKCVGKYFTTKIWEFTMKCPSCSNVITVQTDPKNTEYVVVGGGRRKVEDFDVDDAEVIEFMDDETRAKI 140          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: X6LQ05_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LQ05_RETFI)

HSP 1 Score: 75.9 bits (185), Expect = 4.390e-15
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAF 177
            +G RFNA KD  G Y+STK+WEFSM+C SC  ++KI+TDP+  DY+ VEG +KK  A+
Sbjct:   62 KGVRFNAKKDHIGHYFSTKLWEFSMRCYSCGNMIKIQTDPEACDYKVVEGAKKKASAY 119          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A7S2HCV6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCV6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.640e-14
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAFD 180
            +GTRFNA K++ G Y+STKIW+FSMKC SC  +  I TDPKN+DY +  GI+KK   +D
Sbjct:    3 KGTRFNAKKERDGAYFSTKIWKFSMKCASCPQLFVIATDPKNSDYAFRAGIKKKVEEYD 61          
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Match: A0A7S2WQQ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQQ1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.680e-14
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    4 QGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVEGIRKKDMAF--DPEEAQTERVQDK 216
            +GTRFNA K++ G Y+ T+I++F+MKC SCS  + I TDPKNTDY++  GI+KKD  F  D E+    R+Q+K
Sbjct:   62 KGTRFNAKKEKDGMYFRTQIFKFTMKCHSCSHELVIATDPKNTDYDFRSGIKKKDEEFSVDREDGVDSRIQEK 134          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104780.1023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKV1_ECTSI4.150e-3785.71Coiled-coil domain-containing protein 94 n=2 Tax=E... [more]
A0A835Z9T3_9STRA8.990e-2051.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TDI8_9STRA3.080e-1963.93Coiled-coil domain-containing protein 130 n=2 Tax=... [more]
A0A1Y2I388_9FUNG4.200e-1752.63CWC16 protein n=1 Tax=Catenaria anguillulae PL171 ... [more]
A0A0P1AVX0_PLAHL4.250e-1753.25C2C2-type Zn-finger protein n=1 Tax=Plasmopara hal... [more]
R9PCQ9_PSEHS2.240e-1660.32Uncharacterized protein n=1 Tax=Pseudozyma hubeien... [more]
A0A3P3YBS5_PLABS2.300e-1650.65Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
X6LQ05_RETFI4.390e-1556.90Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S2HCV6_9STRA1.640e-1457.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2WQQ1_9STRA1.680e-1452.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104780contigM-pyrifera_M_contig104780:214..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7e-31
Seed eggNOG ortholog2880.D8LKV1
KEGG koko:K13115
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to virus
EggNOG OGsCOG5134@1,KOG2990@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.3784883-CDS-M-pyrifera_M_contig104780:213..4471622815555.3784883-CDS-M-pyrifera_M_contig104780:213..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104780 214..447 +
1692277461.8641548-CDS-M-pyrifera_M_contig104780:213..4471692277461.8641548-CDS-M-pyrifera_M_contig104780:213..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104780 214..447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104780.1023.1prot_M-pyrifera_M_contig104780.1023.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104780 214..447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104780.1023.1

>prot_M-pyrifera_M_contig104780.1023.1 ID=prot_M-pyrifera_M_contig104780.1023.1|Name=mRNA_M-pyrifera_M_contig104780.1023.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
SQGTRFNATKDQAGTYYSTKIWEFSMKCPSCSTVMKIKTDPKNTDYEYVE
GIRKKDMAFDPEEAQTERVQDKEVSNKL
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mRNA from alignment at M-pyrifera_M_contig104780:214..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104780.1023.1 ID=mRNA_M-pyrifera_M_contig104780.1023.1|Name=mRNA_M-pyrifera_M_contig104780.1023.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig104780:214..447+ (Macrocystis pyrifera P11B4 male)
TCGCAGGGAACCCGCTTCAACGCAACCAAGGACCAGGCGGGGACGTACTA CAGCACGAAGATATGGGAGTTCTCGATGAAGTGCCCCTCCTGCAGCACGG TGATGAAGATCAAGACCGACCCCAAGAACACAGACTACGAGTACGTGGAG GGCATCCGCAAGAAGGACATGGCGTTCGACCCGGAGGAGGCGCAGACCGA GCGGGTGCAAGACAAGGAGGTCTCTAACAAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104780:214..447+

>mRNA_M-pyrifera_M_contig104780.1023.1 ID=mRNA_M-pyrifera_M_contig104780.1023.1|Name=mRNA_M-pyrifera_M_contig104780.1023.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig104780:214..447+ (Macrocystis pyrifera P11B4 male)
TCGCAGGGAACCCGCTTCAACGCAACCAAGGACCAGGCGGGGACGTACTA
CAGCACGAAGATATGGGAGTTCTCGATGAAGTGCCCCTCCTGCAGCACGG
TGATGAAGATCAAGACCGACCCCAAGAACACAGACTACGAGTACGTGGAG
GGCATCCGCAAGAAGGACATGGCGTTCGACCCGGAGGAGGCGCAGACCGA
GCGGGTGCAAGACAAGGAGGTCTCTAACAAGCTGTCGCAGGGAACCCGCT
TCAACGCAACCAAGGACCAGGCGGGGACGTACTACAGCACGAAGATATGG
GAGTTCTCGATGAAGTGCCCCTCCTGCAGCACGGTGATGAAGATCAAGAC
CGACCCCAAGAACACAGACTACGAGTACGTGGAGGGCATCCGCAAGAAGG
ACATGGCGTTCGACCCGGAGGAGGCGCAGACCGAGCGGGTGCAAGACAAG
GAGGTCTCTAACAAGCTG
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