mRNA_M-pyrifera_M_contig104752.1021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104752.1021.1
Unique NamemRNA_M-pyrifera_M_contig104752.1021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A0W8DGN4_PHYNI (Chromodomain-helicase-DNA-binding protein 9 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DGN4_PHYNI)

HSP 1 Score: 62.4 bits (150), Expect = 3.920e-11
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V VND +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:   17 VVVNDQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 56
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BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A8J5IQW8_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IQW8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 6.410e-11
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 KGKKSVRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            KG   V VN  +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  459 KGSAGVEVNGQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 503
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BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: G5A715_PHYSP (Protein kinase domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A715_PHYSP)

HSP 1 Score: 62.4 bits (150), Expect = 4.050e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   10 KGKKSVRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            K    V+VN  +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:   21 KAMTPVKVNGQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 65
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: W2KRZ7_PHYPR (TTK protein kinase n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KRZ7_PHYPR)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V VND +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  614 VVVNDQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 653
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A0W8D081_PHYNI (Serine/threonine-protein kinase mph1 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D081_PHYNI)

HSP 1 Score: 62.4 bits (150), Expect = 4.180e-10
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V VND +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  614 VVVNDQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 653
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A484DUD3_BRELC (Protein kinase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUD3_BRELC)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 MVLKGKKSVRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            M L GK  V VN  +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  579 MSLTGK--VMVNGQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 624
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: F0WFT6_9STRA (TTK family protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WFT6_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.070e-9
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   16 KKSVRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            K  + VN + Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  509 KSRIVVNKTPYIKLEQIGSGGSSKVYRILGPDLKIYALKKIKL 551
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A662XVB3_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XVB3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V+VN  +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  217 VKVNGLRYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 256
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A329SES1_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SES1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V VN  +Y+ LE+IG GGSS+VYR+LGPD+K YALK++KL
Sbjct:  618 VMVNGQKYIKLEQIGSGGSSKVYRMLGPDLKIYALKKIKL 657
[Close]
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Match: A0A7S2ZLK6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLK6_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 2.730e-9
Identity = 25/40 (62.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   25 VRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL 144
            V+VND Q++ LE +GRGGSS+VY+V+GPD K YALK+V++
Sbjct:  230 VQVNDKQFLRLEMVGRGGSSKVYKVMGPDRKIYALKKVRI 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104752.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0W8DGN4_PHYNI3.920e-1167.50Chromodomain-helicase-DNA-binding protein 9 n=1 Ta... [more]
A0A8J5IQW8_9STRA6.410e-1162.22Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G5A715_PHYSP4.050e-1060.00Protein kinase domain-containing protein (Fragment... [more]
W2KRZ7_PHYPR4.180e-1067.50TTK protein kinase n=8 Tax=Phytophthora parasitica... [more]
A0A0W8D081_PHYNI4.180e-1067.50Serine/threonine-protein kinase mph1 n=7 Tax=Phyto... [more]
A0A484DUD3_BRELC5.710e-1062.50Protein kinase domain-containing protein n=1 Tax=B... [more]
F0WFT6_9STRA1.070e-960.47TTK family protein kinase putative n=1 Tax=Albugo ... [more]
A0A662XVB3_9STRA1.460e-965.00Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A329SES1_9STRA2.000e-965.00Protein kinase domain-containing protein n=2 Tax=P... [more]
A0A7S2ZLK6_9RHOD2.730e-962.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104752contigM-pyrifera_M_contig104752:498..641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog4792.ETI41218
Preferred nameTTK
KEGG koko:K08866
KEGG Pathwayko04110,ko04111,map04110,map04111
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007060,GO:0007088,GO:0007093,GO:0007094,GO:0007140,GO:0007143,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009611,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0010862,GO:0010948,GO:0010965,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016321,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030071,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031577,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0036211,GO:0040007,GO:0040020,GO:0042060,GO:0042127,GO:0042246,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043515,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044779,GO:0044877,GO:0045132,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045937,GO:0046777,GO:0046983,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051321,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060393,GO:0065007,GO:0065008,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090092,GO:0090100,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902850,GO:1903046,GO:1903047,GO:1903096,GO:1905132,GO:1905133,GO:1905359,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs3QE1I@4776,KOG0596@1,KOG0596@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Exons1
Model size144
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.3123915-CDS-M-pyrifera_M_contig104752:497..6411622815555.3123915-CDS-M-pyrifera_M_contig104752:497..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104752 498..641 +
1692277461.8296337-CDS-M-pyrifera_M_contig104752:497..6411692277461.8296337-CDS-M-pyrifera_M_contig104752:497..641Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104752 498..641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104752.1021.1prot_M-pyrifera_M_contig104752.1021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104752 498..641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104752.1021.1

>prot_M-pyrifera_M_contig104752.1021.1 ID=prot_M-pyrifera_M_contig104752.1021.1|Name=mRNA_M-pyrifera_M_contig104752.1021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=48bp
MVLKGKKSVRVNDSQYVLLEEIGRGGSSRVYRVLGPDMKFYALKRVKL
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mRNA from alignment at M-pyrifera_M_contig104752:498..641+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104752.1021.1 ID=mRNA_M-pyrifera_M_contig104752.1021.1|Name=mRNA_M-pyrifera_M_contig104752.1021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=144bp|location=Sequence derived from alignment at M-pyrifera_M_contig104752:498..641+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGAAAGGGAAGAAGAGTGTGCGTGTGAATGATTCTCAGTATGT
TTTGTTGGAGGAGATTGGCCGTGGTGGTTCTTCTCGCGTGTATCGCGTGT
TGGGTCCTGACATGAAGTTTTATGCGTTGAAGCGTGTCAAGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104752:498..641+

>mRNA_M-pyrifera_M_contig104752.1021.1 ID=mRNA_M-pyrifera_M_contig104752.1021.1|Name=mRNA_M-pyrifera_M_contig104752.1021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=288bp|location=Sequence derived from alignment at M-pyrifera_M_contig104752:498..641+ (Macrocystis pyrifera P11B4 male)
ATGGTGCTGAAAGGGAAGAAGAGTGTGCGTGTGAATGATTCTCAGTATGT
TTTGTTGGAGGAGATTGGCCGTGGTGGTTCTTCTCGCGTGTATCGCGTGT
TGGGTCCTGACATGAAGTTTTATGCGTTGAAGCGTGTCAAGTTGATGGTG
CTGAAAGGGAAGAAGAGTGTGCGTGTGAATGATTCTCAGTATGTTTTGTT
GGAGGAGATTGGCCGTGGTGGTTCTTCTCGCGTGTATCGCGTGTTGGGTC
CTGACATGAAGTTTTATGCGTTGAAGCGTGTCAAGTTG
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