mRNA_M-pyrifera_M_contig104744.1020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104744.1020.1
Unique NamemRNA_M-pyrifera_M_contig104744.1020.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: C7Z313_FUSV7 (Uncharacterized protein (Fragment) n=1 Tax=Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) TaxID=660122 RepID=C7Z313_FUSV7)

HSP 1 Score: 86.7 bits (213), Expect = 2.560e-17
Identity = 61/151 (40.40%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   22 NVDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGTFSPDGKTLASVNIE---------DGIIGL--WNPVTGKLNGTITADVKSVAFSADGQTLAGGSFDG-IQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA 438
            +V  V FS DGK+ AS S D  I LWDT+ G   R L ++     +  FSP G+ +AS + E         D  +    W+P  G       A + S+AFSA+G     GS  G +QLWDP TG   K L  K S ++R VAFSPDG M+A
Sbjct:   63 DVTSVAFSNDGKLIASASADDKICLWDTETGSLKRRLRIENASLENTAFSPRGQLIASGSYEKQQKFTIERDDFLSNEHWHPGQG-------ARLDSLAFSANGSAKVSGSGHGSLQLWDPETGKPSKEL-LKHSSTTRTVAFSPDGTMVA 205          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: A0A1G3ALM6_9BACT (PEGA domain-containing protein n=1 Tax=Planctomycetes bacterium RBG_16_64_12 TaxID=1801971 RepID=A0A1G3ALM6_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.350e-15
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 1
Query:    4 TLKGQSN-VDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDED--GPISGTFSPDGKTLASVNIEDGIIGLWNPVTGKL---NGTITADVKSVAFSADGQTLAGGSF-DGIQLWDPNT----GVLIKNLDSKR-----SGSSRLVAFSPDGMMLA 438
            TL+G  + V+ V FSPDG+I AS   D T++LW   +G+    L VD+   G     FSP GK LA       I+ LW+P TG L   +G + A  +SVAFSADG+TLA  +  D + L D ++     +L   L ++        S R VA+S DG +LA
Sbjct:  140 TLEGHKDQVNWVEFSPDGRILASAGADNTVRLWSVPSGKPRHVLTVDDSRLGVYCVAFSPGGKRLACC--AGRIVRLWDPETGSLLLTSGDLGA-TRSVAFSADGKTLAVATDGDNVTLCDADSLRVHSILRTKLPTEEVLLGHDDSVRRVAYSSDGSLLA 297          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: K9TFD2_9CYAN (WD40 repeat-containing protein n=1 Tax=Oscillatoria acuminata PCC 6304 TaxID=56110 RepID=K9TFD2_9CYAN)

HSP 1 Score: 77.8 bits (190), Expect = 6.860e-14
Identity = 52/145 (35.86%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   25 VDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGTFSPDGKTLASVNIED----GIIGLWNPVTGKLNGTITA---DVKSVAFSADGQTLAGGSFDGIQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA 438
            ++ ++ S DGKI  S + +GTIK+WD + G    T     +   +   SPDG+ LA+   +D      + LW+  TG+   T+T     + +VAFSA+ QTLA  + + I LW+ NTG ++  L      S+  +AFSPDG  LA
Sbjct:  548 IEFLSLSRDGKILVSTNGEGTIKVWDIEQGTVRHTFSWTGNLRDAIALSPDGRLLAAGIWDDTDNTAKVQLWDTHTGEAVRTLTHLSDGITAVAFSANSQTLASSAKE-IILWNVNTGQVLNTLPGNAPFSTYSLAFSPDGNRLA 691          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: C7ZA78_FUSV7 (NACHT domain-containing protein n=1 Tax=Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) TaxID=660122 RepID=C7ZA78_FUSV7)

HSP 1 Score: 77.8 bits (190), Expect = 6.900e-14
Identity = 56/161 (34.78%), Postives = 79/161 (49.07%), Query Frame = 1
Query:    1 LTLKGQSN-VDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGT---FSPDGKTLASVNIEDG---IIGLWNPVTGK--LNGTITADVKSVAFSADGQTLAGGSFDG------IQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA 438
            LTL+G ++ V  + FSPD +I AS   DG IK+WD   G  L T+  D    +  T    SPDG+T+ +    DG   I G  NP T +  L+         VA S+D   L G   +       I++WD   G  I +L +       ++AFSPDGM++A
Sbjct:  581 LTLEGHADGVHRLAFSPDSRIIASGDRDGIIKIWDAHTGACLNTIWGDNAQILPSTPIAVSPDGQTIITQVEHDGCCRIRGWSNPETARFTLDALFPDKYYRVAISSDSTKLVGCREEPRYGPLRIEVWDLTKGTCITSLSNPNISDEDVLAFSPDGMVVA 741          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: A0A830I7Y5_9EURO (NACHT domain-containing protein n=5 Tax=Aspergillus lentulus TaxID=293939 RepID=A0A830I7Y5_9EURO)

HSP 1 Score: 77.4 bits (189), Expect = 9.800e-14
Identity = 57/144 (39.58%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   19 SNVDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGTFSPDGKTLASVNIEDGIIGLWNPVTGKLNGTITADV----KSVAFSADGQTLAGGSFDGIQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA 438
            ++V  ++ SPD  +    +  GT++LW T +G    TL        S TFSPDGKT  S+  +D    +W+  TG L  T+   V    K V FS DG TLAGGS + +QLWDP TG    + +S    S     FSPDG  LA
Sbjct: 1216 ASVSFLSSSPDDTVLLCVA-GGTMQLWTT-DGVCTHTLTHPTGSAGSVTFSPDGKTFVSIAGDDTAC-VWDVETGSLLHTLKHCVGECIKMVVFSPDGTTLAGGSVNTLQLWDPVTG---SSKNSFEGFSIHDACFSPDGKFLA 1353          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: UPI001C8F4844 (uncharacterized protein n=1 Tax=Aspergillus pseudoviridinutans TaxID=1517512 RepID=UPI001C8F4844)

HSP 1 Score: 75.1 bits (183), Expect = 1.780e-13
Identity = 53/162 (32.72%), Postives = 73/162 (45.06%), Query Frame = 1
Query:   25 VDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGTFSPDGKTLASVNIEDGIIGLWNPVTGKLNGTITA-DVKSVAFSADGQTLAGGSFDGI------------------------QLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMML 435
            +  VTFSPD +IFASWS +GT+ +WD   G  L+TL +     +   FS DG TLA+ +I    + LW+  TG    +     ++ V FS DG+ LA  S   +                         LWD  TG   +   SK  G    ++FS DG  L
Sbjct:   21 LSSVTFSPDSQIFASWSVEGTVCVWDVDTGSRLQTLKLGGRHFLRLVFSSDGNTLAAEDIGMKTLQLWDLATGSSKHSFQGFSIRDVDFSPDGKFLAALSSRKVLLLETETAXXXXXXXXXXXXXXXXXLWDTATGTCTQT--SKLEGLITELSFSDDGKFL 180          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: UPI000A4F749D (WD40 repeat domain-containing protein n=1 Tax=Streptomyces phaeochromogenes TaxID=1923 RepID=UPI000A4F749D)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-12
Identity = 48/124 (38.71%), Postives = 62/124 (50.00%), Query Frame = 1
Query:    7 LKGQSNVDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDG---PISGTFSPDGKTLASVNIEDGIIGLWNPVTGKLNGTITA-------DVKSVAFSADGQTLAGG-SFDGIQLWD 345
            L     V  + FS DG+  A    DGTI+LWD +NG    T ++ E G   P+   F PDG TLA      G + LW+  +G+   T+T            VAFS DG  LA G SFD ++LWD
Sbjct:   43 LINAGEVIALAFSKDGRTLAGGITDGTIRLWDPENGHP--TALLTEAGWNDPVEVAFHPDGTTLADAR---GAVHLWDLASGRTTATLTLPRGDTVDSAWCVAFSPDGALLASGHSFDYVRLWD 161          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: A0A496AB43_9BACT (Uncharacterized protein n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A496AB43_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 1.530e-12
Identity = 51/154 (33.12%), Postives = 78/154 (50.65%), Query Frame = 1
Query:   34 VTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDG-------PISGT--FSPDGKTLASVNIEDGIIGLWNPVTGKLNGTITAD-----------VKSVAFSADGQTLAGGSFDGIQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMML 435
            +TFSPDGKI A    + +I+LW+T+ G++    +VD +        PI  T  FSPDGK LAS  +  G + +W+ VTG    +  A+           +  VAFS+DG  LA GS + ++L      + +K +       +  + FSPD  +L
Sbjct:  471 LTFSPDGKIVAGSRSNSSIRLWNTETGKTFDIFLVDPNDASEEQHRPIIKTLEFSPDGKKLASATM-GGDVQMWDTVTGTALTSFFAEEPPIDHSYRDPIMDVAFSSDGSLLAVGSMEALRLLGNLKQIGLKEMSYGPEVWAEALMFSPDNTVL 623          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: A0A550HHK7_9ACTN (WD40 repeat domain-containing protein n=1 Tax=Streptomyces sp. IB201691-2A2 TaxID=2561920 RepID=A0A550HHK7_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 3.510e-12
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 1
Query:   34 VTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLV-VDEDGPISGTFSPDGKTLASVNIEDGIIGLWNPVTGK------LNGTITAD-VKSVAFSADGQTLAGG-SFDGIQLWD----PNTGVL 363
            + FSPDG+  A    DGTI+LWD +NG     L       P+   F PDG TLA        + LW+ V+G+      L  + TAD    VAFS DG  LA G SFD ++LWD     N G+L
Sbjct:  211 LAFSPDGRTLAGGIQDGTIRLWDAENGHPTALLTDARRITPLEIAFHPDGTTLADAQ---DAVHLWDLVSGRTTAXXTLTRSATADWAWCVAFSPDGALLASGHSFDRVRLWDVASRSNVGIL 330          
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Match: A0A1Z4RYG5_9NOSO (WD-repeat protein n=1 Tax=Nostoc sp. NIES-4103 TaxID=2005458 RepID=A0A1Z4RYG5_9NOSO)

HSP 1 Score: 72.4 bits (176), Expect = 3.520e-12
Identity = 59/162 (36.42%), Postives = 77/162 (47.53%), Query Frame = 1
Query:    4 TLKGQSNVDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDGPISGTFSPDGKTLASVNIEDGIIGLWNPVTGKL---------------NGTITADVKSVAFSADGQTLAGGSFDGI--QLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA 438
            +  GQ+ V  V FSP+G++ AS S DG++K          RTL       I   FSPDG+TL S       I LWN  TG++                G      + +A S DGQ L   S  G   QLW+  TG LI+N D+K S ++  +A SPDG  LA
Sbjct:   96 SFPGQAWV--VAFSPNGEVLASGSQDGSLKXXXXXXXXXXRTLK-HSAAVIDIVFSPDGQTLVSGLDLGSNIKLWNWRTGEIIRIPNDPNSSANSSKRGFDDLKFQPIAISPDGQNLFATSASGSASQLWNLQTGKLIRNFDAKSSINA--IAISPDGKTLA 252          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104744.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C7Z313_FUSV72.560e-1740.40Uncharacterized protein (Fragment) n=1 Tax=Fusariu... [more]
A0A1G3ALM6_9BACT1.350e-1539.13PEGA domain-containing protein n=1 Tax=Planctomyce... [more]
K9TFD2_9CYAN6.860e-1435.86WD40 repeat-containing protein n=1 Tax=Oscillatori... [more]
C7ZA78_FUSV76.900e-1434.78NACHT domain-containing protein n=1 Tax=Fusarium v... [more]
A0A830I7Y5_9EURO9.800e-1439.58NACHT domain-containing protein n=5 Tax=Aspergillu... [more]
UPI001C8F48441.780e-1332.72uncharacterized protein n=1 Tax=Aspergillus pseudo... [more]
UPI000A4F749D1.300e-1238.71WD40 repeat domain-containing protein n=1 Tax=Stre... [more]
A0A496AB43_9BACT1.530e-1233.12Uncharacterized protein n=1 Tax=Candidatus Poribac... [more]
A0A550HHK7_9ACTN3.510e-1240.65WD40 repeat domain-containing protein n=1 Tax=Stre... [more]
A0A1Z4RYG5_9NOSO3.520e-1236.42WD-repeat protein n=1 Tax=Nostoc sp. NIES-4103 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104744contigM-pyrifera_M_contig104744:203..640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog463191.SSEG_01958
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD-40 repeat
EggNOG OGs2GJN3@201174,COG1672@1,COG1672@2,COG2319@1,COG2319@2
COG Functional cat.F
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.2787278-CDS-M-pyrifera_M_contig104744:202..6401622815555.2787278-CDS-M-pyrifera_M_contig104744:202..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104744 203..640 +
1692277461.8062775-CDS-M-pyrifera_M_contig104744:202..6401692277461.8062775-CDS-M-pyrifera_M_contig104744:202..640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104744 203..640 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104744.1020.1prot_M-pyrifera_M_contig104744.1020.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104744 203..640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104744.1020.1

>prot_M-pyrifera_M_contig104744.1020.1 ID=prot_M-pyrifera_M_contig104744.1020.1|Name=mRNA_M-pyrifera_M_contig104744.1020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
LTLKGQSNVDGVTFSPDGKIFASWSYDGTIKLWDTQNGRSLRTLVVDEDG
PISGTFSPDGKTLASVNIEDGIIGLWNPVTGKLNGTITADVKSVAFSADG
QTLAGGSFDGIQLWDPNTGVLIKNLDSKRSGSSRLVAFSPDGMMLA
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mRNA from alignment at M-pyrifera_M_contig104744:203..640+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104744.1020.1 ID=mRNA_M-pyrifera_M_contig104744.1020.1|Name=mRNA_M-pyrifera_M_contig104744.1020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig104744:203..640+ (Macrocystis pyrifera P11B4 male)
CTGACGCTCAAGGGACAGTCTAATGTTGATGGAGTGACATTTTCACCCGA CGGCAAGATTTTCGCTTCCTGGAGTTATGATGGAACGATCAAACTCTGGG ACACTCAAAACGGACGGTCACTACGGACCCTCGTGGTGGACGAAGATGGT CCAATTTCAGGCACATTCTCCCCGGACGGCAAGACCTTAGCCTCAGTCAA TATTGAGGACGGTATCATCGGGCTATGGAATCCAGTGACGGGAAAGCTGA ACGGTACGATCACCGCTGATGTCAAATCCGTAGCCTTCTCGGCTGATGGG CAAACGCTGGCAGGTGGAAGCTTTGATGGGATTCAGCTTTGGGATCCGAA TACAGGAGTTCTGATAAAAAACCTGGATTCAAAAAGATCAGGTTCGTCTC GTTTAGTGGCTTTTTCCCCGGATGGCATGATGTTGGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104744:203..640+

>mRNA_M-pyrifera_M_contig104744.1020.1 ID=mRNA_M-pyrifera_M_contig104744.1020.1|Name=mRNA_M-pyrifera_M_contig104744.1020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig104744:203..640+ (Macrocystis pyrifera P11B4 male)
CTGACGCTCAAGGGACAGTCTAATGTTGATGGAGTGACATTTTCACCCGA
CGGCAAGATTTTCGCTTCCTGGAGTTATGATGGAACGATCAAACTCTGGG
ACACTCAAAACGGACGGTCACTACGGACCCTCGTGGTGGACGAAGATGGT
CCAATTTCAGGCACATTCTCCCCGGACGGCAAGACCTTAGCCTCAGTCAA
TATTGAGGACGGTATCATCGGGCTATGGAATCCAGTGACGGGAAAGCTGA
ACGGTACGATCACCGCTGATGTCAAATCCGTAGCCTTCTCGGCTGATGGG
CAAACGCTGGCAGGTGGAAGCTTTGATGGGATTCAGCTTTGGGATCCGAA
TACAGGAGTTCTGATAAAAAACCTGGATTCAAAAAGATCAGGTTCGTCTC
GTTTAGTGGCTTTTTCCCCGGATGGCATGATGTTGGCACTGACGCTCAAG
GGACAGTCTAATGTTGATGGAGTGACATTTTCACCCGACGGCAAGATTTT
CGCTTCCTGGAGTTATGATGGAACGATCAAACTCTGGGACACTCAAAACG
GACGGTCACTACGGACCCTCGTGGTGGACGAAGATGGTCCAATTTCAGGC
ACATTCTCCCCGGACGGCAAGACCTTAGCCTCAGTCAATATTGAGGACGG
TATCATCGGGCTATGGAATCCAGTGACGGGAAAGCTGAACGGTACGATCA
CCGCTGATGTCAAATCCGTAGCCTTCTCGGCTGATGGGCAAACGCTGGCA
GGTGGAAGCTTTGATGGGATTCAGCTTTGGGATCCGAATACAGGAGTTCT
GATAAAAAACCTGGATTCAAAAAGATCAGGTTCGTCTCGTTTAGTGGCTT
TTTCCCCGGATGGCATGATGTTGGCA
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