mRNA_M-pyrifera_M_contig104740.1018.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104740.1018.1
Unique NamemRNA_M-pyrifera_M_contig104740.1018.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7S3LSJ3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSJ3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.270e-29
Identity = 64/168 (38.10%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   13 WENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPR----------PY-PFTEPRRTESFD-VWGEHSFPPVDGVDIWDMIVHRDKYGIADAHPVLVLDRMAMIVDGRHKLIVSQP 480
            W+NT  +  SDNG + + S   N P+RG K+T FEGG+RV  F SGG +P  ++GT N +  HI DW+ TF  LAG+  +D+PP  P           PY P  +  +T  F+ VWG+ S+P  D V++ + + + +++ +  AHP L+L    +++ G  KLI  QP
Sbjct:  203 WDNTFFLFISDNGGVTAKSTGSNWPLRGEKTTSFEGGMRVTGFLSGGFVPDRLKGTHNGINSHIADWYSTFCYLAGVDDNDDPPVPPAHPNIDSSQVDPYDPKVKNPQTGKFENVWGDESYPGHDSVNLMNYLYYPERHSVDSAHPYLILST-EVVLKGDMKLITGQP 369          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7S2CT11_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CT11_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 1.420e-24
Identity = 49/111 (44.14%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  148 GGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMIVHRDKYGIADAHPVLVLDRMAMIVDGRHKLIVSQP 480
            GG +P H+RG+ +D+  H+ DW+PT  +LAG+SP D+PP  P P     P R    D+WG  SFPPVDGVD+W  ++ +  +  + AHPVL L R  ++     KL+V+QP
Sbjct:    1 GGIIPPHLRGSSSDLIMHMADWYPTLCNLAGVSPFDDPPVPPLPVDPKHPTR----DIWGNDSFPPVDGVDVWPFLM-KPTHNQSSAHPVLWLSREVLLYHDL-KLVVAQP 105          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7S0F8J0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0F8J0_9DINO)

HSP 1 Score: 95.1 bits (235), Expect = 8.490e-22
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGI 243
            G+WE+TLLV   DNG  Q +  D +TP+RG K + F+GG RV AFASGG LPA VRGT ND   HI DW+ TF +LAG+
Sbjct:   66 GMWEDTLLVYSPDNGGYQGNGGD-DTPLRGGKFSDFDGGTRVAAFASGGFLPASVRGTSNDGLIHIADWYVTFCALAGV 143          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7S1CBV2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBV2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.690e-20
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPP 264
            G+W N+L+V  +DNG +   +D  N P+RGAK T +EGG+R  AF SGG +P  +RGT +++  H+ DW+PT    AG+ PSD+PP
Sbjct:  175 GMWNNSLIVYSADNGGI---TDGCNYPLRGAKHTNWEGGMRAAAFVSGGLVPEALRGTTSNLIAHVADWYPTLLKRAGLDPSDDPP 257          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7S3PJZ5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PJZ5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 7.270e-20
Identity = 68/187 (36.36%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 DTGLWENTLLVNQSDNGAMQS---SSDDV--NTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTE--PRRTESFD-------------VWGEHS--FPPVDGVDIW----DMIVHRDKYGI-ADAHPVLVLDRMAMIVDGRHKLIVSQP 480
            D+ LW NT  +  SDNGA      SS+ V  N P+RG KST FEG  RV  F +GG +P  + GT N +  H+ DW+ TF  LAG++ +D+PP      P  E  P   +  D             +W  ++  +P  D V+I     D  +   K G   D   VLVL   A+I+ G +KL+V+QP
Sbjct:  588 DSNLWANTFFIFTSDNGATSKNVPSSETVGSNFPLRGEKSTSFEGAFRVQTFVTGGLIPEELEGTRNKLISHVADWYATFCYLAGVNDNDDPPNH---VPSLEDLPDSIDPLDPVVINPDTGLYDNIWASNNNTYPGHDSVNILPYLLDPTIDAGKRGYHPDERDVLVLSMEAIIM-GDYKLVVAQP 770          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A1X7VWN5_AMPQE (Sulfatase domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VWN5_AMPQE)

HSP 1 Score: 94.7 bits (234), Expect = 1.030e-19
Identity = 57/166 (34.34%), Postives = 78/166 (46.99%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMIVHRDK----------YGIADAHPVLVLDRMAMIVDGRHKLIVS 474
            G+W+NT++V  +DNG    S    N P++G KST FEGG+R  AF +GG LP   RG   D   HI DW+ TF  LAG+ P D+                      G   FP VDG+D+W +I   ++          Y    +HP         ++ G +KLIV 
Sbjct:  254 GMWDNTIMVISADNGGAPCSGS--NYPLKGCKSTFFEGGIRSLAFVNGGLLPESRRGQSTDGFIHIADWYTTFCKLAGVDPDDS----------------------GTGKFP-VDGLDVWPIITGENEKTQHEEIVLAYNFNHSHP-----EQGALIMGNYKLIVG 389          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A1X7VVC3_AMPQE (Sulfatase domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VVC3_AMPQE)

HSP 1 Score: 93.2 bits (230), Expect = 3.640e-19
Identity = 56/164 (34.15%), Postives = 79/164 (48.17%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMIVHRDKYGIADAHPVLVLDR--------MAMIVDGRHKLIVS 474
            G+W+NT++V  +DNG    +    N P++G K+T FEGG+R  AF +GG LP   RG   D   HI DW+PTF  LAG+ P D+                      G   FP VDG+D+W +I   ++      H  +VL             I+ G +KL+V 
Sbjct:  254 GIWDNTIMVISADNGGAPCAGS--NYPLKGCKTTFFEGGVRSVAFVNGGLLPESRRGQSTDGFIHIADWYPTFCKLAGVDPDDS----------------------GTGKFP-VDGLDVWPIITGENE---KTQHEEIVLGYNFDFRRPGQGAIIVGNYKLVVG 389          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A7R9ZVZ3_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZVZ3_9DINO)

HSP 1 Score: 87.8 bits (216), Expect = 3.270e-17
Identity = 51/136 (37.50%), Postives = 65/136 (47.79%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGA---------MQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMIVHRD 387
            G+WE TLLV  +DNG                  N P+ G KST FEGG+RV AFASGG LP  VRGT+ +   HI DW+ TFS LAG+   D                    D       P VD +D+W ++  ++
Sbjct:  306 GMWEQTLLVLTADNGGPVYPSPVPGFNHCGGANNWPLLGGKSTNFEGGVRVAAFASGGFLPVEVRGTKLEANIHITDWYTTFSHLAGVDHRD--------------------DAAVAAGLPQVDSLDVWPLVAGQN 421          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A1X7VS97_AMPQE (Sulfatase domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VS97_AMPQE)

HSP 1 Score: 86.7 bits (213), Expect = 7.670e-17
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 1
Query:    7 GLWENTLLVNQSDNGA-MQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMI 375
            G+W+N L V  SDNG  +   +   N P++G K+T ++GG+RV AF SGG LP  +RG + D   H+ DW+ TF ++AG+ P+D   A+ +                     PPVD  ++W +I
Sbjct:  277 GMWDNLLFVTSSDNGGPVHEGTGANNYPLKGGKTTDWQGGVRVNAFVSGGYLPEKMRGQKTDGYIHLADWYGTFCAIAGVDPTDEKAAKAK--------------------LPPVDSYNMWPLI 380          
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Match: A0A293N9L6_9GAMM (Sulfatase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A293N9L6_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 2.810e-16
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:   10 LWENTLLVNQSDNGA-MQSSSDDVNTPMRGAKSTMFEGGLRVPAFASGGALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPRRTESFDVWGEHSFPPVDGVDIWDMIV 378
            +WE TL++  SDNG  +       N P+RG K + +EGG+RV AF SGGA+P H RG + D   HI DW+ TF++LAG+    + P              E+  V      PP+D +D+W +++
Sbjct:  279 MWEETLMLFVSDNGGPIYYPGSASNYPLRGGKISDWEGGVRVNAFLSGGAIPQHARGKKLDALVHIADWYATFAALAGLKDGTDDP--------------EAAAV----GLPPIDSMDVWPLVM 384          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104740.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3LSJ3_9STRA2.270e-2938.10Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2CT11_9EUKA1.420e-2444.14Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S0F8J0_9DINO8.490e-2258.23Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A7S1CBV2_9STRA2.690e-2047.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3PJZ5_9STRA7.270e-2036.36Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1X7VWN5_AMPQE1.030e-1934.34Sulfatase domain-containing protein n=2 Tax=Amphim... [more]
A0A1X7VVC3_AMPQE3.640e-1934.15Sulfatase domain-containing protein n=1 Tax=Amphim... [more]
A0A7R9ZVZ3_9DINO3.270e-1737.50Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A1X7VS97_AMPQE7.670e-1735.48Sulfatase domain-containing protein n=2 Tax=Amphim... [more]
A0A293N9L6_9GAMM2.810e-1637.10Sulfatase domain-containing protein n=1 Tax=Gammap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104740contigM-pyrifera_M_contig104740:149..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog81824.XP_001748986.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sulfuric ester hydrolase activity
EggNOG OGsCOG3119@1,KOG3867@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.201047-CDS-M-pyrifera_M_contig104740:148..6281622815555.201047-CDS-M-pyrifera_M_contig104740:148..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104740 149..628 -
1692277461.774836-CDS-M-pyrifera_M_contig104740:148..6281692277461.774836-CDS-M-pyrifera_M_contig104740:148..628Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104740 149..628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104740.1018.1prot_M-pyrifera_M_contig104740.1018.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104740 149..628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104740.1018.1

>prot_M-pyrifera_M_contig104740.1018.1 ID=prot_M-pyrifera_M_contig104740.1018.1|Name=mRNA_M-pyrifera_M_contig104740.1018.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
DTGLWENTLLVNQSDNGAMQSSSDDVNTPMRGAKSTMFEGGLRVPAFASG
GALPAHVRGTENDMTFHIVDWHPTFSSLAGISPSDNPPARPRPYPFTEPR
RTESFDVWGEHSFPPVDGVDIWDMIVHRDKYGIADAHPVLVLDRMAMIVD
GRHKLIVSQP
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mRNA from alignment at M-pyrifera_M_contig104740:149..628-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104740.1018.1 ID=mRNA_M-pyrifera_M_contig104740.1018.1|Name=mRNA_M-pyrifera_M_contig104740.1018.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig104740:149..628- (Macrocystis pyrifera P11B4 male)
GACACTGGGTTGTGGGAGAACACGCTCTTGGTGAACCAGAGCGACAACGG AGCCATGCAGAGCTCGTCAGACGACGTGAACACGCCGATGCGGGGCGCAA AGTCCACCATGTTCGAGGGAGGGCTGCGTGTGCCTGCGTTCGCGAGTGGC GGGGCATTGCCAGCACACGTTCGAGGCACCGAGAATGACATGACCTTCCA CATTGTGGATTGGCACCCCACCTTTTCGTCCCTGGCTGGCATCTCTCCTA GCGACAACCCTCCTGCGAGGCCCAGGCCCTATCCTTTCACAGAGCCTCGC CGCACAGAATCCTTCGACGTGTGGGGGGAGCACTCCTTCCCTCCGGTGGA TGGTGTGGACATCTGGGACATGATCGTGCATCGAGACAAGTACGGCATCG CAGACGCCCACCCCGTGCTTGTCCTCGACAGAATGGCCATGATTGTGGAC GGTAGGCACAAGCTCATCGTCTCACAACCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104740:149..628-

>mRNA_M-pyrifera_M_contig104740.1018.1 ID=mRNA_M-pyrifera_M_contig104740.1018.1|Name=mRNA_M-pyrifera_M_contig104740.1018.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig104740:149..628- (Macrocystis pyrifera P11B4 male)
GACACTGGGTTGTGGGAGAACACGCTCTTGGTGAACCAGAGCGACAACGG
AGCCATGCAGAGCTCGTCAGACGACGTGAACACGCCGATGCGGGGCGCAA
AGTCCACCATGTTCGAGGGAGGGCTGCGTGTGCCTGCGTTCGCGAGTGGC
GGGGCATTGCCAGCACACGTTCGAGGCACCGAGAATGACATGACCTTCCA
CATTGTGGATTGGCACCCCACCTTTTCGTCCCTGGCTGGCATCTCTCCTA
GCGACAACCCTCCTGCGAGGCCCAGGCCCTATCCTTTCACAGAGCCTCGC
CGCACAGAATCCTTCGACGTGTGGGGGGAGCACTCCTTCCCTCCGGTGGA
TGGTGTGGACATCTGGGACATGATCGTGCATCGAGACAAGTACGGCATCG
CAGACGCCCACCCCGTGCTTGTCCTCGACAGAATGGCCATGATTGTGGAC
GGTAGGCACAAGCTCATCGTCTCACAACCGGACACTGGGTTGTGGGAGAA
CACGCTCTTGGTGAACCAGAGCGACAACGGAGCCATGCAGAGCTCGTCAG
ACGACGTGAACACGCCGATGCGGGGCGCAAAGTCCACCATGTTCGAGGGA
GGGCTGCGTGTGCCTGCGTTCGCGAGTGGCGGGGCATTGCCAGCACACGT
TCGAGGCACCGAGAATGACATGACCTTCCACATTGTGGATTGGCACCCCA
CCTTTTCGTCCCTGGCTGGCATCTCTCCTAGCGACAACCCTCCTGCGAGG
CCCAGGCCCTATCCTTTCACAGAGCCTCGCCGCACAGAATCCTTCGACGT
GTGGGGGGAGCACTCCTTCCCTCCGGTGGATGGTGTGGACATCTGGGACA
TGATCGTGCATCGAGACAAGTACGGCATCGCAGACGCCCACCCCGTGCTT
GTCCTCGACAGAATGGCCATGATTGTGGACGGTAGGCACAAGCTCATCGT
CTCACAACCG
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