mRNA_M-pyrifera_M_contig104714.1014.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig104714.1014.1
Unique NamemRNA_M-pyrifera_M_contig104714.1014.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A4P9XNK9_9FUNG (Replication factor C subunit 4 n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XNK9_9FUNG)

HSP 1 Score: 170 bits (430), Expect = 1.710e-49
Identity = 80/129 (62.02%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRLT 387
            L+F+A+GD+R A+NNLQST+ GFG V  + VFKVCDQPHP  +R I+Q C +GD D ALR L  LW  GYSA+DI+ TLFRVT+ LD +DE + L+ ++EIGLTHMRV +G  +LLQL GL+ARLCRLT
Sbjct:  202 LIFSAEGDMRQAVNNLQSTYYGFGFVNADNVFKVCDQPHPTMVRGIVQACQRGDADVALRGLSDLWKQGYSAVDIITTLFRVTKNLDDMDEYIKLEFIKEIGLTHMRVLEGVQTLLQLSGLVARLCRLT 330
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A0D6ER39_SPOSA (SPOSA6832_04396-mRNA-1:cds n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ER39_SPOSA)

HSP 1 Score: 170 bits (431), Expect = 2.080e-49
Identity = 78/128 (60.94%), Postives = 106/128 (82.81%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRL 384
            L+FT++GD+R A+NNLQST+SGFG V  + VFKVCDQPHPV ++++I  C+KGDVDGA+ RL+ LWN GYSA+DIV TLFRVT+ +D++ E + L+ +REIG  HMR+ +G S+++QL GLIARLC+L
Sbjct:  220 LIFTSEGDMRQAVNNLQSTYSGFGFVGADEVFKVCDQPHPVKVQQLIACCVKGDVDGAMERLEGLWNHGYSAVDIVTTLFRVTKNMDQLAEYIKLEFIREIGFAHMRILEGVSTVVQLGGLIARLCKL 347
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A8H3C823_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3C823_9AGAM)

HSP 1 Score: 164 bits (414), Expect = 1.450e-48
Identity = 76/127 (59.84%), Postives = 100/127 (78.74%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCR 381
            LLFTA+GDLR ALNNLQST +GFG V+ + VF+VCDQPHPV ++E+++ C  GD+D A+ +L  LWN GYSA+DIV TLFRVT+  D++ E   L+ ++EIG THMRV +G  +L+QL GL+ARLCR
Sbjct:   76 LLFTAEGDLRQALNNLQSTHAGFGFVSADNVFRVCDQPHPVIVQEVLRACKNGDIDNAMAKLNELWNHGYSAVDIVTTLFRVTKTFDELPEYTKLEYIKEIGWTHMRVLEGVGTLIQLGGLMARLCR 202
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: D8PSA4_SCHCM (AAA domain-containing protein n=3 Tax=Agaricomycetes TaxID=155619 RepID=D8PSA4_SCHCM)

HSP 1 Score: 167 bits (422), Expect = 2.980e-48
Identity = 75/130 (57.69%), Postives = 105/130 (80.77%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRLTT 390
            L+FTA+GD+R A+NNLQST+SGFG V+ + VFKVCDQPHP+TI+ II+ C+KGD+DGA+ +L  LW+ GYSA+DIV TLFRV +  D++ E   L+ ++EIG THMR+ +G  +++QL GL+ARLC++ T
Sbjct:  204 LIFTAEGDMRQAINNLQSTWSGFGFVSGDNVFKVCDQPHPITIQTIIRCCLKGDIDGAMVKLTELWDQGYSAVDIVVTLFRVVKNFDEIPEYTKLEYIKEIGFTHMRILEGVGTIIQLSGLLARLCKMNT 333
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A8H8SMT2_9AGAM (Replication factor C subunit 4 n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SMT2_9AGAM)

HSP 1 Score: 167 bits (422), Expect = 2.980e-48
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCR 381
            LLFTA+GDLR ALNNLQST +GFG V+ + VFKVCDQPHPV ++++++ C+KGDVD A+ RL  LW  GYSAIDIV TLFRVT+  D++ E   L+ ++EIG THMRV +G  +L+QL GLIARLCR
Sbjct:  203 LLFTAEGDLRQALNNLQSTHAGFGFVSADNVFKVCDQPHPVIVQDMVRACIKGDVDNAMARLNELWTQGYSAIDIVVTLFRVTKTFDELQEYTKLEYIKEIGWTHMRVLEGVGTLVQLGGLIARLCR 329
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: K5WPJ7_PHACS (AAA domain-containing protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5WPJ7_PHACS)

HSP 1 Score: 166 bits (420), Expect = 6.230e-48
Identity = 74/128 (57.81%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRL 384
            L+FTA+GD+R A+NNLQSTFSGFG V+ + VFKVCDQPHPV ++ +I+ C+KGDV+ A+ +L  LWN GYSA+DIV T+FRV +  D++ E   L+ ++EIG THMR+ +G S+L+QL GL+ARLC++
Sbjct:  206 LIFTAEGDMRQAINNLQSTFSGFGFVSADNVFKVCDQPHPVVVQAMIRSCLKGDVENAMEKLNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFTHMRILEGVSTLIQLGGLMARLCKM 333
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: G7E4K3_MIXOS (AAA domain-containing protein n=2 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E4K3_MIXOS)

HSP 1 Score: 167 bits (422), Expect = 8.040e-48
Identity = 74/128 (57.81%), Postives = 103/128 (80.47%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRL 384
            L+FT+DGD+R A+NNLQST+SGFG V+ E VFKVCDQPHPVT+ ++I+ C KGD+D ++  L+ LW+ GYSA+DIV T+FRVT++ D + E   L+ ++EIG +HMR+ +G S+L QL GL+ARLCR+
Sbjct:  246 LIFTSDGDMRQAINNLQSTYSGFGFVSSEAVFKVCDQPHPVTVNKMIEACAKGDIDVSMEMLEKLWHQGYSAVDIVTTIFRVTKSTDVLPEYTKLEFIKEIGFSHMRILEGVSTLTQLSGLLARLCRI 373
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: K3WFL5_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WFL5_GLOUD)

HSP 1 Score: 164 bits (416), Expect = 1.550e-47
Identity = 76/126 (60.32%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLC 378
            L+FTA+GD+RNALNNLQ+T+SGFG ++D  VFKVCDQPHP  +R II+ C+ G +DGA + + ALW  GYSAIDI+GT+FRV ++ D +DE L L+ ++EIG THM +A G S+LLQ+ GL+ARLC
Sbjct:  192 LIFTAEGDMRNALNNLQATYSGFGFISDTNVFKVCDQPHPTVVRSIIEQCVAGKIDGAEKEVIALWRTGYSAIDIIGTIFRVAKSFD-MDEKLKLEFVKEIGTTHMAIADGVSTLLQIHGLVARLC 316
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A0C3QPN9_9AGAM (AAA domain-containing protein n=1 Tax=Tulasnella calospora MUT 4182 TaxID=1051891 RepID=A0A0C3QPN9_9AGAM)

HSP 1 Score: 165 bits (417), Expect = 1.840e-47
Identity = 75/128 (58.59%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCRL 384
            L+FTA+GD+R A+NNLQSTF+GFG V+ + VFKVCDQPHPV ++++I+ C+KGDV+ AL++L  LWN GYSAIDIV T+FRV +  +++ E   L+ +REIG THMR+ +G  +L+QL GLIARLC++
Sbjct:  207 LIFTAEGDMRQAINNLQSTFAGFGFVSGDNVFKVCDQPHPVIVQDMIKACIKGDVEEALKKLDFLWNQGYSAIDIVTTIFRVVKTYNEIPEYTKLEFIREIGWTHMRILEGVGTLVQLGGLIARLCKM 334
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BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Match: A0A0C2TWA8_AMAMK (AAA domain-containing protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2TWA8_AMAMK)

HSP 1 Score: 164 bits (415), Expect = 2.800e-47
Identity = 71/127 (55.91%), Postives = 102/127 (80.31%), Query Frame = 1 
Query:    1 LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGCMKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILREIGLTHMRVAQGSSSLLQLQGLIARLCR 381
            L+FT++GD+R A+NNLQST+SGFG V+ + VFKVCDQPHP+T+++ I+ CMKGD++GA+ +L  LW+ GYSA+DIV T FRV +  D++ E   L+ ++EIG THMR+ +G  +L+QL GL+ARLC+
Sbjct:  197 LIFTSEGDMRQAINNLQSTYSGFGFVSADNVFKVCDQPHPLTVQDAIRSCMKGDIEGAMSKLDLLWDQGYSAVDIVVTFFRVVKTFDEIPEYTKLEYIKEIGFTHMRILEGVGTLIQLAGLVARLCK 323
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig104714.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9XNK9_9FUNG1.710e-4962.02Replication factor C subunit 4 n=1 Tax=Thamnocepha... [more]
A0A0D6ER39_SPOSA2.080e-4960.94SPOSA6832_04396-mRNA-1:cds n=1 Tax=Sporidiobolus s... [more]
A0A8H3C823_9AGAM1.450e-4859.84Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
D8PSA4_SCHCM2.980e-4857.69AAA domain-containing protein n=3 Tax=Agaricomycet... [more]
A0A8H8SMT2_9AGAM2.980e-4862.99Replication factor C subunit 4 n=1 Tax=Ceratobasid... [more]
K5WPJ7_PHACS6.230e-4857.81AAA domain-containing protein n=1 Tax=Phanerochaet... [more]
G7E4K3_MIXOS8.040e-4857.81AAA domain-containing protein n=2 Tax=Mixia osmund... [more]
K3WFL5_GLOUD1.550e-4760.32AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A0C3QPN9_9AGAM1.840e-4758.59AAA domain-containing protein n=1 Tax=Tulasnella c... [more]
A0A0C2TWA8_AMAMK2.800e-4755.91AAA domain-containing protein n=1 Tax=Amanita musc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig104714contigM-pyrifera_M_contig104714:3..413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score165.2
Seed ortholog evalue2.1e-38
Seed eggNOG ortholog34349.G7E4K3
Preferred nameRFC4
KEGG koko:K10755
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022616,GO:0030894,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0061860,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090618,GO:0097159,GO:0098813,GO:0104004,GO:1901360,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949
EggNOG free text desc.Replication factor C C-terminal domain
EggNOG OGs2YCHP@29000,38G2T@33154,3NUUJ@4751,3UZPA@5204,COG0470@1,KOG0991@2759
Ec32 ortholog descriptionReplication factor C similar to EsV-1-87
Ec32 orthologEc-02_004800.1
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815555.0150242-CDS-M-pyrifera_M_contig104714:2..4131622815555.0150242-CDS-M-pyrifera_M_contig104714:2..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104714 3..413 +
1692277461.698612-CDS-M-pyrifera_M_contig104714:2..4131692277461.698612-CDS-M-pyrifera_M_contig104714:2..413Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig104714 3..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig104714.1014.1prot_M-pyrifera_M_contig104714.1014.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig104714 3..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig104714.1014.1

>prot_M-pyrifera_M_contig104714.1014.1 ID=prot_M-pyrifera_M_contig104714.1014.1|Name=mRNA_M-pyrifera_M_contig104714.1014.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
LLFTADGDLRNALNNLQSTFSGFGRVTDELVFKVCDQPHPVTIREIIQGC
MKGDVDGALRRLQALWNDGYSAIDIVGTLFRVTRALDKVDEALLLQILRE
IGLTHMRVAQGSSSLLQLQGLIARLCRLTTTTTTKK*
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mRNA from alignment at M-pyrifera_M_contig104714:3..413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig104714.1014.1 ID=mRNA_M-pyrifera_M_contig104714.1014.1|Name=mRNA_M-pyrifera_M_contig104714.1014.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig104714:3..413+ (Macrocystis pyrifera P11B4 male)
CTTTTGTTTACTGCTGATGGTGATTTGCGAAACGCTCTCAACAACCTCCA
ATCTACATTTTCTGGATTTGGACGTGTCACTGATGAATTAGTGTTCAAAG
TGTGTGACCAACCACACCCTGTAACAATCAGAGAAATCATCCAAGGTTGT
ATGAAAGGAGATGTTGATGGAGCATTGCGAAGGTTGCAAGCATTGTGGAA
TGATGGATACAGTGCAATTGACATTGTTGGCACTCTCTTCCGTGTCACTC
GTGCACTCGATAAAGTCGATGAAGCACTTCTCCTCCAAATTCTTCGTGAA
ATTGGCCTCACACACATGAGAGTAGCACAAGGATCATCCTCACTCCTTCA
ACTTCAAGGACTCATTGCCAGACTTTGCAGACTCACAACAACTACCACCA
CCAAAAAATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig104714:3..413+

>mRNA_M-pyrifera_M_contig104714.1014.1 ID=mRNA_M-pyrifera_M_contig104714.1014.1|Name=mRNA_M-pyrifera_M_contig104714.1014.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig104714:3..413+ (Macrocystis pyrifera P11B4 male)
CTTTTGTTTACTGCTGATGGTGATTTGCGAAACGCTCTCAACAACCTCCA
ATCTACATTTTCTGGATTTGGACGTGTCACTGATGAATTAGTGTTCAAAG
TGTGTGACCAACCACACCCTGTAACAATCAGAGAAATCATCCAAGGTTGT
ATGAAAGGAGATGTTGATGGAGCATTGCGAAGGTTGCAAGCATTGTGGAA
TGATGGATACAGTGCAATTGACATTGTTGGCACTCTCTTCCGTGTCACTC
GTGCACTCGATAAAGTCGATGAAGCACTTCTCCTCCAAATTCTTCGTGAA
ATTGGCCTCACACACATGAGAGTAGCACAAGGATCATCCTCACTCCTTCA
ACTTCAAGGACTCATTGCCAGACTTTGCAGACTCACAACAACTACCACCA
CCAAAAAATAACTTTTGTTTACTGCTGATGGTGATTTGCGAAACGCTCTC
AACAACCTCCAATCTACATTTTCTGGATTTGGACGTGTCACTGATGAATT
AGTGTTCAAAGTGTGTGACCAACCACACCCTGTAACAATCAGAGAAATCA
TCCAAGGTTGTATGAAAGGAGATGTTGATGGAGCATTGCGAAGGTTGCAA
GCATTGTGGAATGATGGATACAGTGCAATTGACATTGTTGGCACTCTCTT
CCGTGTCACTCGTGCACTCGATAAAGTCGATGAAGCACTTCTCCTCCAAA
TTCTTCGTGAAATTGGCCTCACACACATGAGAGTAGCACAAGGATCATCC
TCACTCCTTCAACTTCAAGGACTCATTGCCAGACTTTGCAGACTCACAAC
AACTACCACCACCAAAAAATAA
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